DY304386

Overview
NameDY304386
Unique NameDY304386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1295
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304386 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.376e-59
Identity = 136/301 (45.18%), Postives = 169/301 (56.15%), Query Frame = 3
Query:    9 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNXXXXXXXXXXXXXV--ATLPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPYELRSRSRPGKKEDKKAATG--TSR-----GGIRTLADLNRTPPGGAXXXXXXXEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAP----APPPENVSHNITFWRNGFTVDDGPLRGMDDPGNASFLESIMRSECPRGXXXXXXXTRGLVELINKRKEEYS*TTEPP 872
            E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN                ++  A                                   PY LRSR   G+ ++ +  +G  +SR     G IRT ADLNR+P  G        E  +YYTGG+KSGM+VQDP K   VDE+F+QARQSAV+RP   + S+S +FTG ARLLSGE VSS+P       P+ + H ITFW NGFTV+DGPLRG  DP NA+F+ SI RSECP             V+L+ +R E +   TEPP
Sbjct:    4 ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLV-RRGENF---TEPP 298          

HSP 2 Score: 34.6538 bits (78), Expect = 2.376e-59
Identity = 20/52 (38.46%), Postives = 27/52 (51.92%), Query Frame = 1
Query:  847 NTLEPPNRRSAFQGVGRTLGGSDS-------SAFCGLNHCPLPVHRVLVGDA 981
            N  EPP  ++ FQGVGRTLG S S       ++   +N  P P   ++V  A
Sbjct:  293 NFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPA 344          
BLAST of DY304386 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.623e-18
Identity = 73/220 (33.18%), Postives = 99/220 (45.00%), Query Frame = 3
Query:  318 SRP-GKKEDKKAATGTSRGGIRTLADLNRTPPGGAXXXXXXXEP----QQYYTGGEKSGMLVQDPTK-------GNQVDEIFNQAR--------QSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPEN--VSHNITFWRNGFTVDDGPLRGMDDPGNASFLESIMRSECPRGXXXXXXXTRGL-VELINKRKEEYS*TTEPP-ICFPGCRENFG 905
            S+P  K   KKA  G   GGIRTL+D N              +     QQY+TGGEKSG++V+   K       G+ V+++F+ A+        +  VE+PD   S  S  +   A       VS      P +  V   +TFW  GFT+DDGPLR  D+P N   L+ I R   PR          GL V LIN   ++Y    +P  + F G  +  G
Sbjct:   81 SKPVAKTVSKKAPAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPD---SFDSVGYQLGATDQGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQKKATTPNGLSVTLINNHNQDYVEPAKPKYVAFSGGGQTLG 297          
BLAST of DY304386 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.738e-12
Identity = 47/122 (38.52%), Postives = 62/122 (50.82%), Query Frame = 3
Query:  441 EPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSS-------APAPP--PENVSHNITFWRNGFTVDDGPLRGMDDPGNASFLESIMRSECP 779
            E Q ++ GGEKSG+ VQ+P    +  +I  +AR++ +   D  +      FTG AR L GE   S        PA P  P  V   + FW +GF+VDDG L   DDP NA  L SI +   P
Sbjct:  102 ENQDFFAGGEKSGLAVQNPDDLKK--KIIEKARRTQLPASD-DSEPRRNYFTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNSIRQGRAP 220          
The following BLAST results are available for this feature:
BLAST of DY304386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBAX1_ARATH2.376e-5945.18UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI1.623e-1833.18NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
UBX1_EMENI1.738e-1238.52UBX domain-containing protein 1 OS=Emericella nidu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YI23RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304386 ID=DY304386; Name=DY304386; organism=Citrus clementina; type=EST; length=1295bp
CAACAGCAGAAGCTAACTCTTCTTTAATCAATTCTTTCGTGGAGATCACA
TCATCCACCAAAGACGAAGCTCTCTTCTTCTTGGAGTCTCATCAGTGGAA
TCTAGACGCCGCCGTTTCGACTTTTCTAGACAACGCCGCAGCTGCCACTG
CCTCCCCCGAAGCGTCTCAATCGGTCGCTACTCTCCCTGCCGTTAACTCC
CCATCGCTTTCAAACTCCCCCTCGACCTCTCCGTCTGCGTCTTTGTCTCG
TTCCCCGTCCCGGTCTCGGTCGCCATCACCTGCTGCGGCTCGCGATCCGT
ACGAGCTGCGTTCCCGAAGCCGACCGGGGAAGAAGGAGGATAAGAAGGCG
GCGACTGGGACATCACGTGGGGGCATTCGGACTCTTGCTGATCTGAATAG
GACTCCTCCTGGTGGGGCCGATAGCGATGACGACGACGACGAGCCGCAGC
AGTATTATACTGGTGGTGAGAAGAGCGGGATGCTGGTCCAAGATCCTACC
AAAGGAAATCAAGTGGATGAAATTTTCAATCAAGCTAGACAATCAGCTGT
AGAAAGGCCTGACCTTCGAGCATCATCAAGCTCAAAAGCCTTCACTGGAA
CAGCAAGGTTACTCTCTGGAGAGACAGTATCATCTGCTCCAGCTCCTCCG
CCTGAAAATGTCTCACACAACATCACTTTTTGGAGGAATGGGTTCACTGT
AGATGATGGTCCATTGCGGGGGATGGATGATCCTGGCAATGCTTCCTTTT
TGGAGAGCATCATGAGGTCCGAGTGCCCAAGGGGACCTGAACCACCTGAA
TAAGAAACTCGTGGGCTTGTTGAACTCATCAATAAGCGAAAGGAGGAATA
CTCTTGAACCACCGAACCGCCGATCTGCTTTCCAGGGTGTAGGGAGAACT
TTGGGTGGGAGTGACTCTTCCGCCTTCTGCGGCTTAAACCACTGCCCCCT
CCCCGTCCATCGGGTCCTAGTGGGGGATGCCAACTTTACGGGACTACCTT
GGCCCACCTGAAGGTTAACAAGATTGGGACTCCCGCTGGGTTCGGCGGGC
GTTCACCCCCCCCCCCTTACCAACAGAAATATATTTCCACAATTCCCTTT
TGGGTCGCTTCAAGAACCCCCGGGGCGTGGCCAGGAAAACTTACCCCAAC
TAACCCGGGCCAAGGGGGGGTTCCCCCCCTCCACAGAAACCCCCCTTCCC
CCCCAATCCTCTAAGACCCCCGAAGACATGTTAAGAGAAAAAACGACGGT
CGTGCGGCAGATTGTGTTGGCAATAGAATCAACTCCGGTCGTGTG
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