DY304393

Overview
NameDY304393
Unique NameDY304393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1185
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.720e-16
Identity = 55/220 (25.00%), Postives = 106/220 (48.18%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGL-VMNNPTAAAVTHVLHNKRDFPS 882
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F    R++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F P  FA  +++G K     VDG +  + +P   +V+      ++ P+
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF----RKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTINGDKYELNLVDGAVATVADPALLSVSVATRRAQEDPA 241          
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.335e-15
Identity = 52/208 (25.00%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGLVMNNPTAAAVT 849
            VLSID            L  LE Q++    +  A++AD+FD+I GTG G LL +M+   + + RP   A+D +        ++F     +GF   + ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ +++P  + +++  C +T+A P+ F P  FA  + +G +     VDG +   +P+  +++
Sbjct:   19 VLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTGTGGLLTAMITTPNENNRPFAAAKDIIPFYFDHGPKIFE---PSGFHLVEPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKTPELDAKMYDICYSTAAAPTYFPPHYFATNTSNGDQYDFNLVDGDVAAVDPSLLSIS 218          
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PATD2_SOLTU (Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.335e-15
Identity = 52/197 (26.40%), Postives = 94/197 (47.72%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGL 816
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL SM+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F+++D ++SP  + +++  C +T+A P+ F P  F   +++G K     VDG +
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQENLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSDLAKSPELDAKMYDICYSTAAAPTYFPPHYFTTNTINGDKYEFNLVDGAV 219          
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PT1K2_SOLTU (Patatin-1-Kuras 2 OS=Solanum tuberosum GN=pat1-k2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.430e-15
Identity = 54/220 (24.55%), Postives = 105/220 (47.73%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGL-VMNNPTAAAVTHVLHNKRDFPS 882
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F P  FA  +++G K     VDG +  + +P   +V+      ++ P+
Sbjct:   19 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTINGDKYKFNLVDGAVATVADPALLSVSVATRRAQEDPA 230          
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PATA3_SOLTU (Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.430e-15
Identity = 54/220 (24.55%), Postives = 105/220 (47.73%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGL-VMNNPTAAAVTHVLHNKRDFPS 882
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F P  FA  +++G K     VDG +  + +P   +V+      ++ P+
Sbjct:   31 VLSIDGGGVKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTINGDKYEFNLVDGAVATVADPALLSVSVATRRAQEDPA 242          
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PAT02_SOLTU (Patatin-02 OS=Solanum tuberosum GN=StPat14K07.03 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.430e-15
Identity = 54/220 (24.55%), Postives = 105/220 (47.73%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGL-VMNNPTAAAVTHVLHNKRDFPS 882
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F P  FA  +++G K     VDG +  + +P   +V+      ++ P+
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTINGDKYEFNLVDGAVATVADPALLSVSVATRRAQEDPA 242          
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PAT01_SOLTU (Patatin-01 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.430e-15
Identity = 54/220 (24.55%), Postives = 105/220 (47.73%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGL-VMNNPTAAAVTHVLHNKRDFPS 882
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F P  FA  +++G K     VDG +  + +P   +V+      ++ P+
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTINGDKYEFNLVDGAVATVADPALLSVSVATRRAQEDPA 242          
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PAT08_SOLTU (Patatin-08 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.267e-14
Identity = 51/197 (25.89%), Postives = 94/197 (47.72%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGL 816
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL SM+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F P  F   +++G K     VDG +
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQENLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFTTNTINGDKYEFNLVDGAV 219          
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PAT05_SOLTU (Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.162e-14
Identity = 55/220 (25.00%), Postives = 104/220 (47.27%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGL-VMNNPTAAAVTHVLHNKRDFPS 882
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +    +    +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + ++   C +T+A P+ F P  FA  + +G K     VDG +  + +P   +V+       + P+
Sbjct:   31 VLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFATNTSNGDKYEFNLVDGAVATVADPALLSVSVATRRAEEDPA 242          
BLAST of DY304393 vs. ExPASy Swiss-Prot
Match: PATA2_SOLTU (Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.823e-14
Identity = 53/220 (24.09%), Postives = 104/220 (47.27%), Query Frame = 1
Query:  235 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKP--FALTSVDG-KTSCTAVDGGL-VMNNPTAAAVTHVLHNKRDFPS 882
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C + +A P+ F P  FA  +++G K     VDG +  + +P   +V+      ++ P+
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSAAAAPTYFPPHYFATNTINGDKYEFNLVDGAVATVADPALLSVSVATRRAQEDPA 242          
The following BLAST results are available for this feature:
BLAST of DY304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PAT16_SOLTU6.720e-1625.00Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]
PT3K1_SOLTU3.335e-1525.00Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ... [more]
PATD2_SOLTU3.335e-1526.40Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1[more]
PT1K2_SOLTU7.430e-1524.55Patatin-1-Kuras 2 OS=Solanum tuberosum GN=pat1-k2 ... [more]
PATA3_SOLTU7.430e-1524.55Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT02_SOLTU7.430e-1524.55Patatin-02 OS=Solanum tuberosum GN=StPat14K07.03 P... [more]
PAT01_SOLTU7.430e-1524.55Patatin-01 OS=Solanum tuberosum PE=2 SV=1[more]
PAT08_SOLTU1.267e-1425.89Patatin-08 OS=Solanum tuberosum PE=2 SV=1[more]
PAT05_SOLTU2.162e-1425.00Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV... [more]
PATA2_SOLTU2.823e-1424.09Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304393 ID=DY304393; Name=DY304393; organism=Citrus clementina; type=EST; length=1185bp
AGAGCTAGCTAGCGTACTGCCTTCTTCTTCAGCTATTTAATGCTCATCAT
CAACAAACCGTGAAGCCTCGCTCCCGCTTTCTTTTTCTTCACGGACTCAT
CAAAACCCTTCAGTTCACTCCTCTAGCTACCAACAATTTAACTATCAATG
GACTTGAGTAAGGTAACCCTGGAGATCTTCAACAAGCTCGAGCAAAAATG
GCTTGCACATTGCGAACCTACCAAGAGAACTCGAGTCCTCAGCATCGACG
GCGGAGGCACCACCGGCATTGTAGCTGGCGCTGCTCTTATCCACCTCGAG
GACCAGATCCGTCTCAAAACCGGCGATCCTCATGCTCAAATCGCCGATTT
CTTCGACATCATTGCCGGCACCGGCATTGGTGCCCTCCTCGCCTCCATGC
TCGTTGCTGATGACGGCTCCGGCCGTCCTCTCTTCACTGCCAGGGACGCC
CTCGATTTAATCACTCGTAGGAACTCCGAACTATTCAACGCTGGGTTCTC
TGCAGGATTTCTCCGCCGCAAACGTAGATTCTCCGGCAAGAGCATGGATA
AGGTGTTGAAAGAAATTTTCATGAGAGATGACGGTAAGGTCCTGACTCTG
AAGGACACGTGTAAGCCCCTGCTTGTTCCTTGCTTTGACTTGAACAGCTC
AGCTCCGTTTGTCTTCTCTCGAGCGGACGCATCCGAGTCACCTAGCTTTA
ACTTCGAGCTCTGGAAAGCATGTCGCGCCACGTCAGCTACGCCCAGCATG
TTCAAGCCATTCGCTTTGACCTCCGTTGACGGCAAGACCAGTTGCACGGC
CGTTGACGGTGGTCTAGTCATGAACAACCCAACAGCAGCAGCGGTTACTC
ATGTGCTGCATAACAAGCGCGATTTTCCGTCGGTTAACGGGCGTCAAGGA
TCTTCTAGTTCTGTCTCTGGGAAACGGGCCGTTTAATCATTGGAAGTGGG
CCGTGCGAAAAAAAAACCCCGAATTAACGGTGAGGGCTCCAGGTCATCTG
AAATTTGAATTTGGGCTTGAAGGGATTCCCAAAAAACCCTTGGAACAAAA
GTTTGGGGGAAAGCAATTTGGGTGGGAAACCGGGGCGAACAACATTCAAA
AATTTAGGGTAAAACGGGTTTGGAAAAATGGGGGGGGGAAAGGGGGGGGG
GCCAGAAAAAAAGGGGAAAACCAAAAAAAGGGGCT
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