DY304395

Overview
NameDY304395
Unique NameDY304395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1271
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EI3EB_DANRE (Eukaryotic translation initiation factor 3 subunit E-B OS=Danio rerio GN=eif3eb PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 8.308e-52
Identity = 99/209 (47.37%), Postives = 153/209 (73.21%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL++TNMVD+AMD++K+LY  +++P  + ++R  VVA+LK L+    PIV   ++P + + +++  D     + L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L  ++ R  LS+LWGK+A+EILMQNW+ A+E+L  L E ID+  + +SPL++
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSETNMVDFAMDVYKNLYPDKEIPHSLRDKRTTVVAQLKQLQSETEPIVKMFEDPETQRQMQSTRDGRMLFEYLADKHSFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPSTDRNALSSLWGKLASEILMQNWEAAMEDLTRLRETIDN-NTVSSPLQS 208          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_NEMVE (Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.085e-51
Identity = 101/202 (50.00%), Postives = 141/202 (69.80%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPN-SFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCT-NSVRRLSALWGKMAAEILMQNWDIALEELNHLEEKIDDPES 686
            MA +DLT ++   LDRHLVFPLLEFL  +++Y + ++LK K++LL+ TNMVD+AMD++K LY  E+VP  +VE+RVEVV  LK L+ +  PI++   +P  + Q     D     + L   + I P+ ++ LY++AKFQ+ECGNYSGAA+YLY YRAL        L+ALWGK+A+EILMQNWD ALE+LN L++ I+   S
Sbjct:    1 MAEHDLTSKMGCFLDRHLVFPLLEFLSVKEIYDEHELLKGKLDLLSNTNMVDFAMDVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPIINCFSDPEFTAQVQSTRDGRQLFEYLERNHDIKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQNWDTALEDLNRLKDVIESNTS 202          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_RAT (Eukaryotic translation initiation factor 3 subunit E OS=Rattus norvegicus GN=Eif3e PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.851e-51
Identity = 103/209 (49.28%), Postives = 152/209 (72.73%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   + R  LS+LWGK+A+EILMQNWD A+E+L  L+E ID+  S +SPL++
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQS 207          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_PONAB (Eukaryotic translation initiation factor 3 subunit E OS=Pongo abelii GN=EIF3E PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.851e-51
Identity = 103/209 (49.28%), Postives = 152/209 (72.73%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   + R  LS+LWGK+A+EILMQNWD A+E+L  L+E ID+  S +SPL++
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQS 207          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_MOUSE (Eukaryotic translation initiation factor 3 subunit E OS=Mus musculus GN=Eif3e PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.851e-51
Identity = 103/209 (49.28%), Postives = 152/209 (72.73%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   + R  LS+LWGK+A+EILMQNWD A+E+L  L+E ID+  S +SPL++
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQS 207          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_MACFA (Eukaryotic translation initiation factor 3 subunit E OS=Macaca fascicularis GN=EIF3E PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.851e-51
Identity = 103/209 (49.28%), Postives = 152/209 (72.73%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   + R  LS+LWGK+A+EILMQNWD A+E+L  L+E ID+  S +SPL++
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQS 207          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_HUMAN (Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.851e-51
Identity = 103/209 (49.28%), Postives = 152/209 (72.73%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   + R  LS+LWGK+A+EILMQNWD A+E+L  L+E ID+  S +SPL++
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQS 207          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_BOVIN (Eukaryotic translation initiation factor 3 subunit E OS=Bos taurus GN=EIF3E PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.851e-51
Identity = 103/209 (49.28%), Postives = 152/209 (72.73%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   + R  LS+LWGK+A+EILMQNWD A+E+L  L+E ID+  S +SPL++
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQS 207          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EI3EA_XENLA (Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3e-A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.567e-50
Identity = 99/209 (47.37%), Postives = 151/209 (72.25%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y ++++L  K++LL+ TNMVD+AMD++K+LY  +++P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L +++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L  ++ R  LS+LWGK+A+EILMQNWD A+E+L  L+E ID+  + +SPL++
Sbjct:    1 MADYDLTTKIAQFLDRHLVFPLLEFLSVKEIYNEKELLHGKLDLLSDTNMVDFAMDVYKNLYADKEIPLALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDHLAEKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPSTDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NTVSSPLQS 208          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_XENTR (Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis GN=eif3e PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.046e-50
Identity = 98/209 (46.89%), Postives = 151/209 (72.25%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y ++++ + K++LL+ TNMVD+AMD++K+LY  +++P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L +++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L  ++ R  LS+LWGK+A+EILMQNWD A+E+L  L+E ID+  + +SPL++
Sbjct:    1 MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEKELFQGKLDLLSDTNMVDFAMDVYKNLYADKEIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDHLAEKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPSTDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NTVSSPLQS 208          
The following BLAST results are available for this feature:
BLAST of DY304395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EI3EB_DANRE8.308e-5247.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_NEMVE1.085e-5150.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_RAT1.851e-5149.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_PONAB1.851e-5149.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MOUSE1.851e-5149.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MACFA1.851e-5149.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_HUMAN1.851e-5149.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BOVIN1.851e-5149.28Eukaryotic translation initiation factor 3 subunit... [more]
EI3EA_XENLA1.567e-5047.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_XENTR2.046e-5046.89Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304395 ID=DY304395; Name=DY304395; organism=Citrus clementina; type=EST; length=1271bp
CGCTCATCCTCAGTTTGCTCTTCGTCTACAGCAGAACAGTAGCAGCATAC
GCCGCTGCCGCCGACGAACAAAATTTGAACGCGACAATGGCGACGTACGA
TTTGACGCAGAGAATCGCTCCGAATCTGGACCGGCATCTGGTGTTTCCGC
TGCTGGAGTTTCTTCAAGAGCGGCAGATGTACCCGGACGAGCAGATTTTG
AAATCGAAGATAGAGCTCTTGAACAAGACGAACATGGTCGACTACGCGAT
GGACATCCACAAGAGCCTCTACCACACCGAAGACGTCCCGCAGGATATGG
TCGAGCGGAGGGTCGAGGTCGTCGCTCGGTTGAAGGCCCTGGAGGAGCGC
GCCGCCCCGATCGTTTCGTTCTTGCAGAACCCTAACTCCTTTCAAGATTT
GAGAGCTAATGACCAGCACTACAATTTGCAGATGCTTCACGACCGTTACC
AGATTGGCCCGGACCAGATCGAGGCGCTTTATCAGTATGCCAAATTTCAG
TTTGAATGTGGGAACTACTCTGGGGCTGCTGACTATCTGTACCAGTACAG
GGCCTTGTGCACTAACAGTGTAAGGAGGCTGAGTGCATTATGGGGAAAAA
TGGCGGCTGAAATATTGATGCAGAATTGGGATATTGCTCTTGAAGAACTT
AATCACTTAGAGGAAAAAATTGATGACCCAGAGAGTTTCACATCACCTTT
AAAAACAAATTGAAAGTAGGATATGGCTTATGCAATTGGAGGTCTCTTAT
TCTGTTTCAGTCCTGATGATGGTAAAAACCGAAACCAAGCATAGTTCACT
CCGGAGGACTATCTAATGGCCGATAATTCCCTGGTCGCCAATCGTACACC
ATGCAACCAACTTGCCCACTTTGGCCACACTAGGGGAAAACGACTTTCCA
CGTATTTTGGAAAGGGTCTTCAACGACTTACTCTGATTTTTCCCAGATCC
CCATCAGCGTAAAATAATGGCACACGTATACGGCGAATCAGCACTCTCCC
GACGGGGACAACGCAAGATTAGAGGGGCGCCTCCATAGGGGAGACGTCGG
GTTTGCTGGTATATGGCGAGTGGGTACGAAATGGGGTGGTGAGGCGTAGA
AGAACTCAAGGACTTTTAAACCACCACGTCTTTCCTGTTGTGCTTCAGTG
ATTGCAATATTGCTCACTCTTGAAACCTCACACGTAACCTACGCCACGCA
TATAAAAGGTAGTAACTTAGTATGGATTTTACGTAATGGCGCTAATGTCA
TCCTTATTATTCGACGCCTTC
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