DY304397

Overview
NameDY304397
Unique NameDY304397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1252
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_ARATH (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 8.853e-74
Identity = 101/130 (77.69%), Postives = 114/130 (87.69%), Query Frame = 3
Query:   75 PLKHVKKSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFEFDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHE 464
            PLKHV +SNF++ L+ LR  V+AADFVAIDLEMTG+TSAPWRDS EFDR+DVRYLKVKDSAEKFAV+QFGV PFRWD   QSF+++PHNFF+F RQEL  D  A+EFLCQTTSMDFLAKYQFDFN CIHE
Sbjct:   37 PLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHE 166          

HSP 2 Score: 81.2629 bits (199), Expect = 8.853e-74
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  464 REQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDGGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVM 781
            R +E++A K +   + ++ +DS    +E++   L  + D+LFA RM+  L+EW  GLL   +  SE     N S Q  ET+F  MRPA+SL GFTSHQL ++  V+
Sbjct:  173 RREEEEASKRLKMLHGEDGIDSSGETEELK---LVRLADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVL 275          
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARNL_ARATH (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.272e-20
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   78 LKHVKKSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFEFDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHE 464
            +K VKKSNF   L  +R  + ++DF+A+ L+ TG  +A W      D     YLK K +AE++ ++QF + PF     K     HP+NF +F R EL     +Y F CQ + +  +A+  FDFN CI+E
Sbjct:   26 VKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSK--LTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGFDFNICIYE 152          
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_DANRE (Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 4.652e-15
Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = 3
Query:   87 VKKSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFN 449
            V + NF   L  + + VQ ADF++ID E TGI+  P   +     D  + RY K++  +  F + QFGV  FR+D  + ++IT   NF+IF +          +F+CQ++S+DFLA   FDFN
Sbjct:    3 VTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHSMNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQGFDFN 124          
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_HUMAN (Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.143e-14
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 3
Query:   93 KSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFN 449
            +SNF S L  +   ++ ADF AID E +GI+  P   +    FD  + RY K+K  +  F + QFG+  F++D     +IT   NF++F +   P + ++   +F+CQ++S+DFLA   FDFN
Sbjct:    5 RSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFN 124          
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_BOVIN (Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 6.717e-14
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 3
Query:   93 KSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFN 449
            +SNF S L  +   ++ ADF AID E +GI+  P   +    FD  + RY K+K  +  F + QFG+  F++D     +IT   NF++F +   P + ++   +F+CQ++S+DFLA   FDFN
Sbjct:    5 RSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFN 124          
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_XENLA (Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.496e-13
Identity = 42/123 (34.15%), Postives = 69/123 (56.10%), Query Frame = 3
Query:   87 VKKSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFN 449
            + +SNF   L  +   ++ ADF+AID E +GI+  P   +    FD  + RY K+K  + +F + QFG+  F +D  +  ++    NF+IF +     +    +F+CQ++S+DFLA   FDFN
Sbjct:    3 ITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQGFDFN 124          
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_PONAB (Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.954e-13
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 3
Query:   93 KSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQR--QELPLDGAAYEFLCQTTSMDFLAKYQFDFN 449
            +SNF   L  +   ++ ADF AID E +GI+  P   +    FD  + RY K+K  +  F + QFG+  F++D     +IT   NF++F +     P D    +F+CQ++S+DFLA   FDFN
Sbjct:    5 RSNFKCNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSPPD---VKFVCQSSSIDFLASQGFDFN 124          
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_MOUSE (Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.699e-13
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   93 KSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFN 449
            +SNF   L  +   ++ ADF AID E +GI+  P   +    FD  + RY K+K  +  F + QFG+  F++D      +T   NF++F +          +F+CQ++S+DFLA   FDFN
Sbjct:    5 RSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFDFN 124          
The following BLAST results are available for this feature:
BLAST of DY304397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PARN_ARATH8.853e-7477.69Poly(A)-specific ribonuclease PARN OS=Arabidopsis ... [more]
PARNL_ARATH6.272e-2037.98Poly(A)-specific ribonuclease PARN-like OS=Arabido... [more]
PARN_DANRE4.652e-1537.40Poly(A)-specific ribonuclease PARN OS=Danio rerio ... [more]
PARN_HUMAN5.143e-1436.59Poly(A)-specific ribonuclease PARN OS=Homo sapiens... [more]
PARN_BOVIN6.717e-1436.59Poly(A)-specific ribonuclease PARN OS=Bos taurus G... [more]
PARN_XENLA1.496e-1334.15Poly(A)-specific ribonuclease PARN OS=Xenopus laev... [more]
PARN_PONAB1.954e-1336.59Poly(A)-specific ribonuclease PARN OS=Pongo abelii... [more]
PARN_MOUSE9.699e-1334.71Poly(A)-specific ribonuclease PARN OS=Mus musculus... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304397 ID=DY304397; Name=DY304397; organism=Citrus clementina; type=EST; length=1252bp
TGAAGAATCGATGGCCGATTACGATTCTCTATCGCGCCTTCAGCTCTTCG
ACGACGTCGACGACGGCGTCGTTTCCTCTAAAACACGTGAAGAAATCAAA
CTTCGACTCGGCGCTCAGCTCGCTTCGCCACCACGTCCAGGCCGCTGATT
TCGTTGCAATCGACCTCGAAATGACCGGCATCACCAGCGCGCCGTGGCGC
GACTCCTTCGAGTTTGACCGATTCGATGTTCGCTACCTCAAGGTAAAAGA
TTCCGCCGAGAAGTTCGCCGTCATTCAGTTCGGTGTATCGCCCTTTCGCT
GGGACCCACTCAAGCAGTCCTTCATCACCCATCCACACAATTTCTTTATA
TTTCAACGTCAAGAGCTTCCACTTGATGGTGCTGCTTATGAATTCCTTTG
TCAGACAACATCAATGGATTTCTTGGCCAAATACCAGTTTGATTTCAATG
CCTGCATTCATGAAGAGAACAAGAAGATAAAGCTCTTAAACATGTGAATT
CAACATATGAGGATGAGTCATTGGATTCATGGCATAGTCTAAAGGAAATT
AGAGATACTCATTTGTTCAACATACCTGATATCCTCTTTGCCGAAAGAAT
GAAGGACAGATTGAGTGAATGGCTTGGTGGATTGTTGCGGAATAGAGATG
GAGGTTCTGAAGTTCAACCAAGTTTTAATGACTCGAAGCAGCAGTTTGAA
ACCATTTTCTTCAAGATGCGTCCTGCGATTAGTCTGAATGGTTTCACTTC
TCATCAACTTCTGTTGATTCAATTGGTAATGTTGTTTTATCTTTGAAATC
AATTGGTCGTGCTATCTTTTTATCTTACAGTTCTGTCCAATATGCTCTTG
AGTTCTCGTCTCAAGATTGGTGTGTTGAAGCATAATTAATAAGGGATGGG
GTGGACAAGACCATTTGGTTTGTAATACCGGCGTTTTATATGAATTTTTG
GCTGGATCGTTTAAGTGGAAAAAATCCCATTAAGGATCATCCCCTGGGGA
GGGAATTGTATTTTCCCCACAAAAACTTGGCCCCTTTTTCCTCCCCTAAA
GGGATTTACCTTTTTAAAAAACGGAAATTGGGTAACGTGGGACAAAAGGA
GGGGAAAAATAAAAAAAAAAACGGGGTTTGGAAAAAAAGGGCATTTTCAA
AAAAAATTTTTGGTCTTTTCTTCTCCCGGGGGCCCCGGGGGGGGGGAAAA
AAAATTTCTTTGGGGTTTTCCCCCAAAAACACCCGTTCTTTATTTGTGGG
GG
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