DY304397
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_ARATH (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2) HSP 1 Score: 218.779 bits (556), Expect = 8.853e-74 Identity = 101/130 (77.69%), Postives = 114/130 (87.69%), Query Frame = 3 Query: 75 PLKHVKKSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFEFDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHE 464 PLKHV +SNF++ L+ LR V+AADFVAIDLEMTG+TSAPWRDS EFDR+DVRYLKVKDSAEKFAV+QFGV PFRWD QSF+++PHNFF+F RQEL D A+EFLCQTTSMDFLAKYQFDFN CIHE Sbjct: 37 PLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHE 166 HSP 2 Score: 81.2629 bits (199), Expect = 8.853e-74 Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 2 Query: 464 REQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDGGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVM 781 R +E++A K + + ++ +DS +E++ L + D+LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSHQL ++ V+ Sbjct: 173 RREEEEASKRLKMLHGEDGIDSSGETEELK---LVRLADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVL 275
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARNL_ARATH (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 6.272e-20 Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 3 Query: 78 LKHVKKSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFEFDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHE 464 +K VKKSNF L +R + ++DF+A+ L+ TG +A W D YLK K +AE++ ++QF + PF K HP+NF +F R EL +Y F CQ + + +A+ FDFN CI+E Sbjct: 26 VKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSK--LTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGFDFNICIYE 152
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_DANRE (Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 4.652e-15 Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = 3 Query: 87 VKKSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFN 449 V + NF L + + VQ ADF++ID E TGI+ P + D + RY K++ + F + QFGV FR+D + ++IT NF+IF + +F+CQ++S+DFLA FDFN Sbjct: 3 VTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHSMNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQGFDFN 124
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_HUMAN (Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.143e-14 Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 3 Query: 93 KSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFN 449 +SNF S L + ++ ADF AID E +GI+ P + FD + RY K+K + F + QFG+ F++D +IT NF++F + P + ++ +F+CQ++S+DFLA FDFN Sbjct: 5 RSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFN 124
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_BOVIN (Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 6.717e-14 Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 3 Query: 93 KSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFN 449 +SNF S L + ++ ADF AID E +GI+ P + FD + RY K+K + F + QFG+ F++D +IT NF++F + P + ++ +F+CQ++S+DFLA FDFN Sbjct: 5 RSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFN 124
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_XENLA (Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.496e-13 Identity = 42/123 (34.15%), Postives = 69/123 (56.10%), Query Frame = 3 Query: 87 VKKSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFN 449 + +SNF L + ++ ADF+AID E +GI+ P + FD + RY K+K + +F + QFG+ F +D + ++ NF+IF + + +F+CQ++S+DFLA FDFN Sbjct: 3 ITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQGFDFN 124
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_PONAB (Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.954e-13 Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 3 Query: 93 KSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQR--QELPLDGAAYEFLCQTTSMDFLAKYQFDFN 449 +SNF L + ++ ADF AID E +GI+ P + FD + RY K+K + F + QFG+ F++D +IT NF++F + P D +F+CQ++S+DFLA FDFN Sbjct: 5 RSNFKCNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSPPD---VKFVCQSSSIDFLASQGFDFN 124
BLAST of DY304397 vs. ExPASy Swiss-Prot
Match: PARN_MOUSE (Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 9.699e-13 Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 93 KSNFDSALSSLRHHVQAADFVAIDLEMTGITSAPWRDSFE--FDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFN 449 +SNF L + ++ ADF AID E +GI+ P + FD + RY K+K + F + QFG+ F++D +T NF++F + +F+CQ++S+DFLA FDFN Sbjct: 5 RSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFDFN 124 The following BLAST results are available for this feature:
BLAST of DY304397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY304397 ID=DY304397; Name=DY304397; organism=Citrus clementina; type=EST; length=1252bpback to top |