DY304398

Overview
NameDY304398
Unique NameDY304398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304398 vs. ExPASy Swiss-Prot
Match: Y3893_DICDI (Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium discoideum GN=DDB_G0283893 PE=3 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.680e-52
Identity = 115/326 (35.28%), Postives = 183/326 (56.13%), Query Frame = 1
Query:    1 WSLGLKLPSVPHILSMLRGLSMGHLATQRCIDEGGILPLLHALEGVSGEN-EIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRV----------------------NLGGGTSGSARGECVY---TTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVPIAQYVRYVDQYWDNLNALGRADGSRLRLLTYDICLMLARFATGASFSAKNKGGGKRKQLQVSAFY 900
            W   L+ P++P +L +L+GL+MGH  TQ    E  ++  +H LE  +G + +IG+ AENLL++++    +G+    + VS  R  ++ E    A + RE +L+ LG+ Q+     G+ I+    +               CMVCREGYS +PTD+LG+Y++SKR+                      +L   +SG   G  +Y   TTV++FN IHF CH++A +AD ++K PK+EWEGA LRN ++ CN LFPV  P +    +  Y D++W NLN + R +G + R+L++D+  +L R A   SFS  +KGGGK   ++++  +
Sbjct: 5350 WLSSLEKPALPFVLVLLKGLAMGHEPTQNMTLESNLIKRIHILEETAGTSAKIGSLAENLLESIA----EGNEKTSKIVSDTRKESKMEKLSHAQKHREDVLKQLGLAQQ-----GKHIMAN--VVPGSIEDLDDDEGFTCMVCREGYSFKPTDVLGIYTFSKRIPLTSVGETTCPPSSTTNVAASLSLSPSSSGGGGGGALYYGFTTVTHFNFIHFNCHRDATKADRSMKVPKEEWEGAALRNQQTKCNGLFPVLPPKMNSDAFTPYSDKFWVNLNNISRVEGPKFRILSHDLKFLLIRLAKDESFSTDSKGGGKESNIRIAPMF 5664          
BLAST of DY304398 vs. ExPASy Swiss-Prot
Match: UBR4_RAT (E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.057e-38
Identity = 105/296 (35.47%), Postives = 150/296 (50.68%), Query Frame = 1
Query:    1 WSLGLKLPSVPHILSMLRGLSMGHLATQRCIDEGGILPLLHALEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVPIAQYVRYVDQYWDNLNALGRADGSRLRLLTYDICLMLARFATGASFSAKNKGGGKRKQLQV 888
            W   L  P++P IL +LRGL+M H ATQ  I    I  L H LE VS +  IG  AENLL+ L          + +K+   R  TR E +R+A+  R++ L  LGM     ++ G+  VV +                 C +CREGY  +PT +LG+Y+++KRV L        R +  Y+TVS+FNI+H+ CH  A R    L   ++EWE A L+N  + CN L PV GP VP + +   + ++   L           +L  +DI L+  RFA   SFSA   GGG+   + +
Sbjct: 4721 WKKFLSRPALPFILRLLRGLAMQHPATQVLIGTDSITSL-HKLEQVSSDEGIGTLAENLLEALREHPD-----VNKKIDAARRETRAEKKRMAMAMRQKALGTLGMT---TNEKGQ--VVTKTALLKQMEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVAL-EEMENKPRKQQGYSTVSHFNIVHYDCHLAAVR----LARGREEWESAALQNANTKCNGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHL 5000          
BLAST of DY304398 vs. ExPASy Swiss-Prot
Match: UBR4_MOUSE (E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.057e-38
Identity = 105/296 (35.47%), Postives = 150/296 (50.68%), Query Frame = 1
Query:    1 WSLGLKLPSVPHILSMLRGLSMGHLATQRCIDEGGILPLLHALEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVPIAQYVRYVDQYWDNLNALGRADGSRLRLLTYDICLMLARFATGASFSAKNKGGGKRKQLQV 888
            W   L  P++P IL +LRGL+M H ATQ  I    I  L H LE VS +  IG  AENLL+ L          + +K+   R  TR E +R+A+  R++ L  LGM     ++ G+  VV +                 C +CREGY  +PT +LG+Y+++KRV L        R +  Y+TVS+FNI+H+ CH  A R    L   ++EWE A L+N  + CN L PV GP VP + +   + ++   L           +L  +DI L+  RFA   SFSA   GGG+   + +
Sbjct: 4707 WKKFLSRPALPFILRLLRGLAMQHPATQVLIGTDSITSL-HKLEQVSSDEGIGTLAENLLEALREHPD-----VNKKIDAARRETRAEKKRMAMAMRQKALGTLGMT---TNEKGQ--VVTKTALLKQMEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVAL-EEMENKPRKQQGYSTVSHFNIVHYDCHLAAVR----LARGREEWESAALQNANTKCNGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHL 4986          
BLAST of DY304398 vs. ExPASy Swiss-Prot
Match: UBR4_HUMAN (E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.803e-38
Identity = 104/296 (35.14%), Postives = 150/296 (50.68%), Query Frame = 1
Query:    1 WSLGLKLPSVPHILSMLRGLSMGHLATQRCIDEGGILPLLHALEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVPIAQYVRYVDQYWDNLNALGRADGSRLRLLTYDICLMLARFATGASFSAKNKGGGKRKQLQV 888
            W   L  P++P IL +LRGL++ H  TQ  I    I P LH LE VS +  IG  AENLL+ L          + +K+   R  TR E +R+A+  R++ L  LGM     ++ G+  VV +                 C +CREGY  +PT +LG+Y+++KRV L        R +  Y+TVS+FNI+H+ CH  A R    L   ++EWE A L+N  + CN L PV GP VP + +   + ++   L           +L  +DI L+  RFA   SFSA   GGG+   + +
Sbjct: 4710 WKKFLSRPALPFILRLLRGLAIQHPGTQVLIGTDSI-PNLHKLEQVSSDEGIGTLAENLLEALREHPD-----VNKKIDAARRETRAEKKRMAMAMRQKALGTLGMT---TNEKGQ--VVTKTALLKQMEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVAL-EEMENKPRKQQGYSTVSHFNIVHYDCHLAAVR----LARGREEWESAALQNANTKCNGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHL 4989          
BLAST of DY304398 vs. ExPASy Swiss-Prot
Match: POE_DROME (Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.866e-35
Identity = 99/287 (34.49%), Postives = 148/287 (51.57%), Query Frame = 1
Query:   22 PSVPHILSMLRGLSMGHLATQRCIDEGGILPLLHALEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVPIAQYVRYVDQYWDNLNALGRADGSRLRLLTYDICLMLARFATGASFSAKNKGGGKRKQL 882
            PS+ +IL  L GLS  H ATQ  I +  I+P++H LE VS +  +G+ AENLL+ LS      D     +V  +R  TR E +RLA+  RE+ L  LGMR    ++ G+  V A+                 C +CREGY+ +P  +LG+Y+++KR N+      S R    YTTV++FN++H  CH  A R    L   + EWE A+L+N  + CN L P+ GP+V  A +   + ++   +    +          +D+ L+L RFA   SF     GGG +  +
Sbjct: 4845 PSLKYILRFLTGLSNHHEATQVAISKD-IIPIIHRLEQVSSDEHVGSLAENLLEALST-----DSATAARVQQVRDFTRAEKKRLAMATREKQLDALGMR---TNEKGQ--VTAKGSILQKIEKLRDETGLTCFICREGYACQPDKVLGIYTFTKRCNVEEFELKS-RKTIGYTTVTHFNVVHVDCHTSAIR----LTRGRDEWERASLQNANTRCNGLLPLWGPAVGEAAFSACMTRHSSYMQESTQRCDISYTSSVHDLKLLLVRFAWERSFHDDAGGGGPQSNM 5115          
BLAST of DY304398 vs. ExPASy Swiss-Prot
Match: POE_DROPS (Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura GN=poe PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.156e-35
Identity = 99/287 (34.49%), Postives = 147/287 (51.22%), Query Frame = 1
Query:   22 PSVPHILSMLRGLSMGHLATQRCIDEGGILPLLHALEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVPIAQYVRYVDQYWDNLNALGRADGSRLRLLTYDICLMLARFATGASFSAKNKGGGKRKQL 882
            PS+ +IL  L GLS  H ATQ  I +  I+P++H LE VS +  +G+ AENLL+ LS      D     +V  +R  TR E +RLA+  RE+ L  LGMR    ++ G+  V A+                 C +CREGY+ +P  +LG+Y+++KR N+      S R    YTTV++FN++H  CH  A R    L   + EWE A+L+N  + CN L P+ GPSV    +   + ++   +    +          +D+ L+L RFA   SF     GGG +  +
Sbjct: 4904 PSLKYILRFLTGLSNHHEATQVAISKD-IIPIIHRLEQVSSDEHVGSLAENLLEALST-----DAATAARVQQVRDFTRAEKKRLAMATREKQLDALGMR---TNEKGQ--VTAKGSILQKIEKLRDETGLTCFICREGYACQPEKVLGIYTFTKRCNVEEFELKS-RKTIGYTTVTHFNVVHVDCHTSAIR----LTRGRDEWERASLQNANTRCNGLLPLWGPSVLETTFSASMTRHSSYMQESTQRCDISYTSSIHDLKLLLVRFAWERSFHDDAGGGGPQSNM 5174          
The following BLAST results are available for this feature:
BLAST of DY304398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y3893_DICDI1.680e-5235.28Probable E3 ubiquitin-protein ligase DDB_G0283893 ... [more]
UBR4_RAT1.057e-3835.47E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegi... [more]
UBR4_MOUSE1.057e-3835.47E3 ubiquitin-protein ligase UBR4 OS=Mus musculus G... [more]
UBR4_HUMAN1.803e-3835.14E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens G... [more]
POE_DROME1.866e-3534.49Protein purity of essence OS=Drosophila melanogast... [more]
POE_DROPS4.156e-3534.49Protein purity of essence OS=Drosophila pseudoobsc... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304398 ID=DY304398; Name=DY304398; organism=Citrus clementina; type=EST; length=1273bp
TGGTCATTGGGTTTAAAACTCCCATCTGTCCCACATATATTGTCCATGCT
GAGGGGCCTGTCGATGGGGCACTTGGCCACTCAGAGATGTATTGATGAGG
GAGGAATTTTGCCTCTGCTTCATGCTCTGGAAGGAGTATCGGGAGAGAAT
GAAATTGGCGCTCGGGCTGAAAACTTGTTAGACACACTATCCAATAAAGA
GGGAAAAGGAGATGGATTTTTGGAGGAAAAGGTGAGTATGTTGCGACATG
CCACTAGGGATGAAATGAGGCGTCTTGCTTTAAGGAAGAGAGAGCAGTTA
CTTCAGGGACTTGGAATGAGACAAGAACTAGCTTCAGATGGTGGCGAGCG
AATTGTGGTTGCTCAGCCAATTTTGGAAGGTTTAGAAGATGTAGAGGAGG
AGGAGGATGGATTGGCATGTATGGTGTGCCGAGAGGGCTACAGTTTGAGG
CCTACTGATTTGCTTGGTGTTTACTCTTACAGCAAGCGAGTGAACTTGGG
TGGTGGTACTTCAGGAAGTGCTCGTGGAGAATGTGTATACACTACTGTCA
GTTATTTCAATATCATTCACTTCCAGTGTCACCAGGAAGCCAAAAGAGCA
GATGCTGCTCTGAAGAATCCAAAGAAAGAATGGGAGGGAGCTACCCTCCG
GAACAATGAATCTCTTTGCAATTCCTTATTTCCTGTGAGAGGTCCATCTG
TTCCAATAGCACAGTATGTCCGCTATGTTGATCAGTACTGGGATAACCTC
AATGCTCTCGGCCGTGCTGATGGGAGCCGGCTCCGGCTGTTGACTTATGA
CATTTGTCTGATGCTTGCTCGATTTGCAACTGGGGCATCATTCAGCGCCA
AAAATAAAGGTGGTGGAAAAAGAAAGCAACTCCAAGTTTCTGCCTTTTAT
GGGAACCATGGGTCGGCATCCTTCCCAAACATGGAAATTTCCCCCCAGCC
CCCCAATTTGGGCCAAGGCTGTATCCACTAACGAAAAACCCTCCATGGGA
AATATCCAAACCTTCCCCCCCCGGGTACCCCCTTCCGGAAGGAAAGGAGA
AAAACTTTGGACAATTATAGGAAGGGGGAAAACCCACTTTTCTTCCGGAA
AACCCATAAGAAACCCTTTGGTTTGGCAAACACCCCCCTAAACCCCTTTC
TTTTCCACACGGGGAAAAAAAATAACCAAAAAAATTTACCATGGGACCAC
CACACCACCTCTGGGGGGGTTTCTGGGTACAGAAAAGGGGGGTCCTCGTG
GTTTTTTTTTTTCTACTTTCTTT
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