DY304399

Overview
NameDY304399
Unique NameDY304399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1262
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY304399 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 8.303e-20
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 2 
Query:  404 KYESGAFEAGGYKWKLVLYPNGNKSKNVQDHISLYLAVADTSSVTLGWEVYAVFRLFLLDQNQDNYLVVQDAMGKERRFNGLKLEWGFDQFIPLKAFNDASNGYLVEDTCIFGAEVFVKE 763
            K+ S  F  GGYKW+++++P GN   NV DH+S+YL V+D +S+  GW  YA F L +++Q    Y V ++    + +FN  + +WGF  F+PL    D S GYLV DT +  AEV V++
Sbjct:   71 KHYSDVFVVGGYKWRILIFPKGN---NV-DHLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKET---QHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRK 183
[Close]
BLAST of DY304399 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.180e-19
Identity = 46/120 (38.33%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:  404 KYESGAFEAGGYKWKLVLYPNGNKSKNVQDHISLYLAVADTSSVTLGWEVYAVFRLFLLDQNQDNYLVVQDAMGKERRFNGLKLEWGFDQFIPLKAFNDASNGYLVEDTCIFGAEVFVKE 763
            K+ S  F  GGYKW+++++P GN   NV DH+S+YL VAD +++  GW  Y+ F L +++Q  + Y + ++    + +FN  + +WGF  F+PL    + + GYLV DT +  AEV V++
Sbjct:   70 KHYSDVFVVGGYKWRILIFPKGN---NV-DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKET---QHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182
The following BLAST results are available for this feature:
BLAST of DY304399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP12_ARATH8.303e-2041.67Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH9.180e-1938.33Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ13RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304399 ID=DY304399; Name=DY304399; organism=Citrus clementina; type=EST; length=1262bp
CAACACCAAAAGTCCAAGATTGCGCCGTTAACATCGCTCTACTCTCTAGC
CTAAAGACCAAGCATTACCGCAAGCCGCTAACCCTTTCTCGCCGGCGCTC
TCATTTCTCACCGGACTCAACCACCCGTCGCCGCCTTCGCTGCCATTTGA
TCAGTCAAGGATCGGTAGCAGAGCCTTGTGCCTTGCCCTCGCCAACAAAA
ACAGTACCGTCCAAGTAGCGTCTACAGCCTCCGGCTTCAGTTTAATTACC
AAAAAAGAAAAAAAAATGAACAATTTAACAAAGATGGACAGCGTCTTTGT
TGACAAAGATGCCATTGCAAGATCCACTTCACATGTACCACCGGCTCATT
ACATTGTCAAAATAAAATCATTTTCAGTACTTGCGGAAAAAGCAGTTGAT
GAGAAATACGAATCAGGAGCATTTGAAGCTGGAGGCTACAAGTGGAAACT
TGTTCTATATCCAAATGGAAATAAGAGCAAGAATGTGCAAGACCACATTT
CACTCTACTTAGCAGTGGCAGACACAAGTTCAGTTACTCTTGGTTGGGAA
GTCTATGCAGTTTTTCGTTTATTTTTACTTGATCAGAACCAAGACAACTA
CTTGGTGGTTCAAGATGCCATGGGAAAGGAAAGAAGGTTTAATGGATTGA
AGCTTGAATGGGGTTTTGATCAGTTCATCCCGCTTAAAGCTTTCAACGAT
GCTTCAAATGGATACCTTGTCGAGGATACATGTATTTTTGGAGCTGAAGT
CTTTGTTAAAGAAAGAAACATAATCAAAGGAGAGTGCCTATCCATGGAAA
AATATGCATATAGTTCTAAGTATGTTTGGAAGGTTGAAAACTTTTCAAAG
TTGGGCGAAGGACGTCAGGAATCACAAGTGTTCAGTGCTGGGAAATCACA
ATTGGAAGATACCGCTCTATCCCATGGGAAATGGCTTCGGTGATGGCGAT
CATCCTTTCCCTGTTCTTGGCTTTGGCAGAATTCGCCGTTGAGGGCTGGT
AAAATATAATGCAAAAAATCATTTGCAAATTTTAGATTCAAGTGGGGGGA
AAAAACCAAAAATCTTTTTTCAGGGGAAAAGCCCGGGGTTCCCCTGGACC
CAACCCCCTTGGGCTTTTGGGGCTTCCTAAAAAAATTCCTTTTTTCAAAA
AGAAAAAAAATTAAAAAGGAAGCCCCCAAAAAAACTGGGGGGTTTTTTCT
AAATGGTGAAAAGGAAACGAGTATAAGGGCGCCCTTGGGGGGGGGGGAGA
AAAGCCCGTAGA
back to top