DY304402

Overview
NameDY304402
Unique NameDY304402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304402 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.950e-22
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:  502 QPTCPINAXXXXXXXXXXXXXVHIGLGNPVENACCPVLKGLLELEAAICLCTTIRLKLLNLNIFIPLALQALI-TCGKTPPPGFVCP 759
            QPTCPI+A             +HIG+G   +  CCP+L GL++L+AAICLCTTIRLKLLN+NI +P+ALQ LI  CGK PP  F CP
Sbjct:  258 QPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCP 344
The following BLAST results are available for this feature:
BLAST of DY304402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC6.950e-2256.3236.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ16RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304402 ID=DY304402; Name=DY304402; organism=Citrus clementina; type=EST; length=1283bp
AGCTAAGCTATGGGTTCAAAGGTTACAGCTATGTTCTTCATCTTCTTTAT
TTCCATGTTAATGTCATTGCCGCCAATATACGCTTGTGTTCCTTGTCAAC
CGCCACATTCACATCCACCATATCACCGTCCAAGCCCTCCGAAGACTCAT
CCGAAAATTCCCCACCCGAACCCACCACGCACCAAACACCCGCCACATCA
TGGAGGTCACCCCCCGAAAGTATCACCACCATCCAAAAGGCCGCCAATTA
TTGCCCCTCCAATCATTTTTCCCCCACCACCAGTCACAGTCCCTCCAATT
ACACATCCTCCGGTAATTACACCTCCTGTCACAAACCCTCCGGTCACAAT
TCCACCACCTTCTACTTATCCACCTTACACACCGCCTGGCGGCGGCGGCG
GTGGAGGTGGCGGCGGTGGAGGTGGCGGCGGTGGAGGTGGTGGAGGAGGA
GGTGGCGGAGGAGGCGGCAATGTTCCGGGACTTAACCCTCCACCTACTAC
TCAACCCACTTGTCCAATCAATGCACTTAAGCTAGGGCTTTGTTTGGATG
TTCTTGGAGGTTTGGTGCACATAGGGCTAGGAAACCCCGTTGAAAATGCT
TGCTGCCCAGTGCTAAAAGGGTTGCTAGAGCTCGAAGCAGCCATTTGTCT
TTGCACTACTATAAGGCTCAAGCTTCTTAACCTGAACATATTCATTCCTC
TTGCTCTCCAGGCCTTGATAACCTGTGGAAAGACTCCTCCTCCTGGTTTT
GTATGTCCTCCTCTTTAAGCGTACTAAATTGTAATAATAAGGGTTCTGGT
GGTGTAAGGGCACTGAATACAATGCCGGAGTTTATTTTCCTTGTAATCCC
TAAACATTTTTCCCTCCCCCCATGGTTTTATTTTTATTAACCTTTCCCAC
CCAAATTACCCCCCCAATTGTCCTAAAAAATTAAAAATCCTACAATCATT
GTGAATCCCCAAGAAACCTTTCCCAAAAAATTTTAATTTCCCTAATTAAT
TTTAACTCCCATAAAAAAAAAATGGAAAATAATTTTTTTTGTAAAACCCT
TTAATGCTTTCCAAAAACGCGCAAAAGGGGTTGGAAAAAATAATCTGCCC
GTCTCCCACCAAAAAAAAAATATTCCCCCCCAAAAAAAAAAACCCCTCGC
CCTGCGGAATATCTATATAAAAAAAAAAAAAGTGGGTACCACAATTAACA
ACATCTTTAAAAATTCTCTCCAAAAACCCAGGGTGAACCCACACCCCCCG
GGGTCCTCCACCCCTATTCTTATAAAACAAAAT
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