DY304403

Overview
NameDY304403
Unique NameDY304403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1271
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHO1_DROME (Ras-like GTP-binding protein Rho1 OS=Drosophila melanogaster GN=Rho1 PE=1 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 6.703e-102
Identity = 182/192 (94.79%), Postives = 185/192 (96.35%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKRKKPRCSLL 716
            M  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP+VPIILVGNKKDLRNDP TI +L KMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVR+VFETATRAALQVKKRKK RC LL
Sbjct:    1 MTTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQVKKRKKTRCLLL 192
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BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHO_APLCA (Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 1.308e-97
Identity = 172/192 (89.58%), Postives = 185/192 (96.35%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKRKKPRCSLL 716
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEV+HFCP+VPIILVGNKKDLRND +T  EL KMKQEPV+P++GRAMAEKINA++YLECSAK+KEGVR+VFETATRAALQVKK+KK  C +L
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKKDLRNDESTKRELMKMKQEPVRPEDGRAMAEKINAYSYLECSAKTKEGVRDVFETATRAALQVKKKKKGGCVVL 192
[Close]
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHO1_CAEEL (Ras-like GTP-binding protein rhoA OS=Caenorhabditis elegans GN=rho-1 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 5.496e-96
Identity = 166/192 (86.46%), Postives = 184/192 (95.83%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKRKKPRCSLL 716
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFP+VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEV+HFCP+VPIILVGNK+DLR+DP T+ EL KMKQEPVKP++GRA+AE+I AFAYLECSAK+K+G+REVFE AT+AALQ KK+KK +C +L
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRDLRSDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAYLECSAKTKDGIREVFEKATQAALQQKKKKKSKCMIL 192
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BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHOC_CHICK (Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 2.728e-95
Identity = 172/193 (89.12%), Postives = 179/193 (92.75%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKRKKPR-CSLL 716
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCP+VPIILVGNKKDLRND  T  EL KMKQEPVKP+EGR MA +INAF YLECSAK+KEGVREVFE ATRA LQV+K KK R C LL
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKKRRGCPLL 193
[Close]
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHOA_RAT (Transforming protein RhoA OS=Rattus norvegicus GN=Rhoa PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 5.687e-93
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKK-RKKPRCSLL 716
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCP+VPIILVGNKKDLRND  T  EL KMKQEPVKP+EGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ ++ +KK  C +L
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLIL 193
[Close]
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHOA_MOUSE (Transforming protein RhoA OS=Mus musculus GN=Rhoa PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 5.687e-93
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKK-RKKPRCSLL 716
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCP+VPIILVGNKKDLRND  T  EL KMKQEPVKP+EGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ ++ +KK  C +L
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLIL 193
[Close]
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHOA_PONAB (Transforming protein RhoA OS=Pongo abelii GN=RHOA PE=2 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 7.428e-93
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKK-RKKPRCSLL 716
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCP+VPIILVGNKKDLRND  T  EL KMKQEPVKP+EGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ ++ +KK  C +L
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL 193
[Close]
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHOA_HUMAN (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 7.428e-93
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKK-RKKPRCSLL 716
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCP+VPIILVGNKKDLRND  T  EL KMKQEPVKP+EGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ ++ +KK  C +L
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL 193
[Close]
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHOA_BOVIN (Transforming protein RhoA OS=Bos taurus GN=RHOA PE=1 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 7.428e-93
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKK-RKKPRCSLL 716
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCP+VPIILVGNKKDLRND  T  EL KMKQEPVKP+EGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ ++ +KK  C +L
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL 193
[Close]
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHOA_CANFA (Transforming protein RhoA OS=Canis familiaris GN=RHOA PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 1.655e-92
Identity = 167/193 (86.53%), Postives = 177/193 (91.71%), Query Frame = 3 
Query:  141 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKK-RKKPRCSLL 716
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCP+VPIILVGNKKDLRND  T  EL KMKQEPVKP EGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ ++ +KK  C +L
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPTEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL 193
The following BLAST results are available for this feature:
BLAST of DY304403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHO1_DROME6.703e-10294.79Ras-like GTP-binding protein Rho1 OS=Drosophila me... [more]
RHO_APLCA1.308e-9789.58Ras-like GTP-binding protein RHO OS=Aplysia califo... [more]
RHO1_CAEEL5.496e-9686.46Ras-like GTP-binding protein rhoA OS=Caenorhabditi... [more]
RHOC_CHICK2.728e-9589.12Rho-related GTP-binding protein RhoC OS=Gallus gal... [more]
RHOA_RAT5.687e-9386.53Transforming protein RhoA OS=Rattus norvegicus GN=... [more]
RHOA_MOUSE5.687e-9386.53Transforming protein RhoA OS=Mus musculus GN=Rhoa ... [more]
RHOA_PONAB7.428e-9386.53Transforming protein RhoA OS=Pongo abelii GN=RHOA ... [more]
RHOA_HUMAN7.428e-9386.53Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
RHOA_BOVIN7.428e-9386.53Transforming protein RhoA OS=Bos taurus GN=RHOA PE... [more]
RHOA_CANFA1.655e-9286.53Transforming protein RhoA OS=Canis familiaris GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ17RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304403 ID=DY304403; Name=DY304403; organism=Citrus clementina; type=EST; length=1271bp
ATTGAATATTGTCGATAAGCCAAAAAATCTACAGAAATTAGCCAGAATCT
TCAGGTATCTACAAAATATAATAAATAACAACCCTCGCATGTGAGGGTAC
TATGTGGTGGTGCTGTTCTTCTTCCGCTAATTCAGAACCGATGGCTGCGA
TACGTAAAAAATTAGTGATCGTCGGGGACGGTGCTTGCGGTAAAACATGC
CTCCTAATCGTGTTCAGTAAGGATCAGTTTCCGGAAGTGTACGTGCCGAC
AGTATTCGAAAATTACGTCGCCGACATAGAAGTTGACGGTAAGCAAGTAG
AGCTCGCATTATGGGACACAGCCGGTCAAGAAGATTACGACCGGCTGCGG
CCACTATCCTACCCCGACACGGACGTGATACTTATGTGTTTCTCCGTGGA
CTCGCCGGATTCGCTGGAGAACATACCTGAGAAGTGGACTCCCGAGGTGA
AACACTTCTGCCCCAGTGTTCCTATCATCCTGGTAGGCAATAAAAAGGAT
TTGCGCAACGACCCAGCTACGATTAACGAGCTGCGTAAGATGAAGCAGGA
GCCTGTGAAGCCGCAGGAAGGGCGCGCGATGGCCGAGAAGATCAATGCCT
TCGCCTACTTGGAGTGCTCGGCCAAGAGCAAGGAGGGCGTGCGCGAGGTG
TTTGAGACGGCGACCCGTGCTGCATTACAAGTCAAGAAGAGGAAGAAGCC
CAGGTGTTCTTTGCTGTAATTGTGCTGTTTTCGGGAGGACTCTGATTTAT
AAATCGTTCGCATACTGCCTGAACACTTACGTTTAAAACGACTCGGGCTC
TGCATCAATCGCGACGTCGGCCACACAGTGCTTCCTTCCGATACTGACAG
CCGACGTGCTGTTCGGCCCGTGTTGCACCCACCCCACTCAATTATTCTGT
GGGTACACTTTTCCATTTGGTACTTGTATATTTTATAGAAAATCTATAAA
CCATTAAGCGTAAATTGCCCTAAACAATGTACTCCGGGGGGTGAACCGGA
ACCCCCCCCCAGGTTCCCCAAAAAATTTTTTGTGCCAAAACAATCCAGGT
AATTAATAATCAAATATCCAATTTTTTTCAAAAATAAAAAAAATATCCCC
CCAAAAGGGTTTCCCCCCCACCCAAAAAACCCCCCTTTTTTTAATTTTTT
TTTAATTTTTGAATTTTTTATATTTTTTCTCCAATAAAAAAAAATTTTTA
ATATATTAAAATATTTTTTGTTTAAAGAAAATATGTTGTTTATAATTTTT
TTTTATACACCACAAAAAAAA
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