DY304407

Overview
NameDY304407
Unique NameDY304407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1262
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.362e-38
Identity = 87/159 (54.72%), Postives = 120/159 (75.47%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQKV 482
            LS +EENKI IG+SGAI PLV LL NG  RGKKDA+TAL++L   +ENK   VQ+GA++ L++LM D ++ MVDK+  V++ L T+ E + ++ +EGGIP+LVE++E+G+ R KE A A LLQ+   S  +  +V +EGA+PPLVALSQSGT RA++KV
Sbjct:  651 LSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLM-DPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKV 808          
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.710e-36
Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQK 479
            LS +EE K  IG +GAI PLV LL +G + GKKDA+TAL++L    ENK + ++AGA++ LVELM D +  MV+K+  V++ L T+ E K ++ EEGGIPVLVE++E+G+ R KE A A LLQ+C  S  +   V REG IPPLVAL++SGT R K+K
Sbjct:  532 LSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM-DPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEK 688          
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.010e-33
Identity = 84/159 (52.83%), Postives = 114/159 (71.70%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGA-IPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQK 479
            LS L+ N+  IG+S A I  LV+LL  G  RGKKDA++AL++L    +NK R VQA A+K LVEL+ D    MVDK+  +++ L  + E + ++V EGGIP+LVE +++G+QR KE A ++LLQ+C  S  + TLV +EGAIPPLVALSQSGT RAK+K
Sbjct:  582 LSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELL-DPDLEMVDKAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEK 739          
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 6.129e-31
Identity = 73/161 (45.34%), Postives = 109/161 (67.70%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSN-MVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQKVI 485
            LS  +ENKI+IG SGAIP LV LLENG  RGKKDA+TAL++LC    NK RAV+AG +  LV++++D + + MVD++  ++S+L    +AK+++V+   +P L+ I++    R +E A AILL +C+        + R GA+ PL+ LS++GT R K+K I
Sbjct:  441 LSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAI 601          
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 8.004e-31
Identity = 74/159 (46.54%), Postives = 107/159 (67.30%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSS-NMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQK 479
            LS  +ENKI+IG SGAI  LV LL+ G VRGKKDA+TAL++LC  + NK RAV+AG +KPLV+++ D SS  M D++  ++S+L +   AKT+++    IP L++ ++    R +E A AILL +C+        + R GA+ PL+ LS+ GT RAK+K
Sbjct:  452 LSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRK 610          
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.042e-30
Identity = 76/159 (47.80%), Postives = 107/159 (67.30%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVARE-GAIPPLVALSQSGTNRAKQK 479
            LS ++ENK+ IG +GAI  L+SLLE G  RGKKDA+TA+++LC  + NK RAV+ G + PL  L+ D    MVD++  ++++L T  E KT++ E   IPVLVEII  G+ R +E A AIL  +C  + + R  VARE GA   L  L+++GT+RAK+K
Sbjct:  455 LSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGN-IERLNVAREVGADVALKELTENGTDRAKRK 612          

HSP 2 Score: 68.9366 bits (167), Expect = 7.045e-11
Identity = 43/145 (29.66%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   21 ENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVY---RTLVAREGAIPPLVAL 446
            +N++ I  +GAIP LV LL +   R ++ + TAL +L   + NK   V AGA+  +VE++ + S    + +A  +  L  + E K ++   G I  L+ ++E GT+R K+ A   +  +C    +Y   ++   + G + PL  L
Sbjct:  378 DNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLC----IYQGNKSRAVKGGIVDPLTRL 518          
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.012e-27
Identity = 62/158 (39.24%), Postives = 104/158 (65.82%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQK 479
            LS ++ENK+ IG +GAIPPLV+LL  G  RGKKDA+TAL++LC  + NK +AV+AG +  L+ L+ +  S MVD+S  ++++L +  + K+ +     +PVLV+ I  G+ R KE + A+L+ +C  +  +     + G +  L+ ++++GT+R K+K
Sbjct:  467 LSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRK 624          
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.196e-26
Identity = 63/158 (39.87%), Postives = 98/158 (62.03%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQK 479
            LS ++ENK+ IG  GAIPPLV LL  G  RGKKDA+TAL++LC  + NK +A++AG +  L  L+ +  S MVD++  ++++L +  E K  +     +P LVE I  G+ R +E A A+L+ +C     +     + G + PL+ L+ +GT+R K+K
Sbjct:  462 LSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRK 619          

HSP 2 Score: 70.4774 bits (171), Expect = 2.421e-11
Identity = 64/219 (29.22%), Postives = 105/219 (47.95%), Query Frame = 3
Query:   21 ENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVY---RTLVAREGAIPPLV-ALSQSGTNRAKQKVIIFRFFFLCLWSVIESLPAADMAGNEIIPRSCALFSIVFDFQQTRTLFCHVTAACLSFNLC 665
            +N++ I  +GAIP LV LL     R ++ + TAL +L   + NK   V AGA+  +V+++   S    + +A  +  L  + E K ++   G IP LV ++  GTQR K+ A   L  +C    +Y   +    R G IP L   L++ G+    +         L + +++ S P     G  II  S A+ S+V +F +T +      AA +  +LC
Sbjct:  385 DNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLC----IYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEA--------LAILAILSSHP----EGKAIIGSSDAVPSLV-EFIRTGSPRNRENAAAVLVHLC 586          
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 4.545e-26
Identity = 64/158 (40.51%), Postives = 99/158 (62.66%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQK 479
            LS L+ENK+ IG S  IPPLV LL++G +RGKKDA TAL++L     NK RA+ AG ++PL+ L+ D +  M+D++  ++ LL +  E + ++ +   I  LVE I  GT + KE A ++LL++   +  +     + G    LV ++ SGTNRA++K
Sbjct:  489 LSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQRK 646          
BLAST of DY304407 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 3.601e-23
Identity = 62/162 (38.27%), Postives = 101/162 (62.35%), Query Frame = 3
Query:    6 LSQLEENKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVC--EESVVYRTLVAREGAIPPLVALSQSGTNRAKQKVI 485
            LS ++E K+ IG  GAIP LV LL  G  RGKKDA+ AL++LC  + NK RA++AG +  ++ L+ + +  ++D++  ++S+L +  E K ++     +PVLVE+I  GT R +E A A++L +C  E  +V+       G + PL  L+ +GT+R K+K +
Sbjct:  477 LSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAV 638          

HSP 2 Score: 71.633 bits (174), Expect = 1.087e-11
Identity = 46/149 (30.87%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   24 NKILIGRSGAIPPLVSLLENGGVRGKKDASTALYSLCSGKENKIRAVQAGAMKPLVELMADFSSNMVDKSAYVMSLLVTLSEAKTSLVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVY---RTLVAREGAIPPLVALSQSGT 461
            N+I I  +GAIP L+SLL +  +R ++ A TAL +L   ++NK   + +GA+  +V ++ + S    + +A  +  L  + E K ++   G IP LV ++  G+QR K+ A A L  +C    +Y   +    R G +P ++ L  + T
Sbjct:  401 NRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLC----IYQGNKGRAIRAGLVPLIMGLVTNPT 545          
The following BLAST results are available for this feature:
BLAST of DY304407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PUB4_ARATH1.362e-3854.72U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB2_ARATH3.710e-3653.16U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB3_ARATH1.010e-3352.83U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB11_ARATH6.129e-3145.34U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB10_ARATH8.004e-3146.54U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB14_ARATH3.042e-3047.80U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB12_ARATH7.012e-2739.24U-box domain-containing protein 12 OS=Arabidopsis ... [more]
PUB13_ARATH1.196e-2639.87U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB15_ARATH4.545e-2640.51U-box domain-containing protein 15 OS=Arabidopsis ... [more]
SL11_ORYSJ3.601e-2338.27Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ21RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304407 ID=DY304407; Name=DY304407; organism=Citrus clementina; type=EST; length=1262bp
TTCGTTTATCACAATTAGAAGAGAATAAAATCTTAATCGGACGGTCAGGA
GCGATTCCACCTCTAGTCAGCCTTCTCGAAAACGGAGGTGTTCGCGGGAA
AAAGGACGCATCAACGGCTTTATACTCACTCTGTTCTGGGAAGGAGAACA
AAATCAGGGCCGTCCAAGCGGGAGCCATGAAACCGTTGGTGGAATTGATG
GCTGATTTCAGTTCAAACATGGTTGACAAGTCCGCATATGTCATGAGCTT
GCTAGTTACGTTATCGGAGGCGAAAACGTCGTTGGTTGAGGAAGGTGGGA
TACCTGTGTTAGTGGAGATTATAGAAGTGGGGACACAGAGGCAGAAGGAA
ATCGCGGTGGCTATATTGTTGCAGGTTTGCGAGGAAAGTGTGGTGTACCG
TACTCTGGTGGCCCGCGAAGGAGCGATCCCTCCCTTGGTCGCTTTGTCAC
AGTCCGGCACTAATCGCGCCAAGCAAAAGGTCATAATTTTCCGATTTTTC
TTTCTCTGCCTCTGGTCGGTGATTGAGTCATTGCCAGCCGCTGACATGGC
AGGCAATGAGATTATTCCCCGTAGTTGTGCCCTCTTTTCGATTGTTTTTG
ATTTTCAACAAACGAGAACATTATTTTGCCACGTCACTGCAGCCTGCCTT
TCTTTTAACCTTTGCCTTTTTTTAGTTTTTTTTTTTTAAAAAAAAAAAAA
AGTTCAGCCGTTCTGTACTGCGCGGATTAAGGGTAACGTGTAGCTAAAAA
CGGGTTATCGACTATATAGATTTTATTTTGGCTATCTTATTTGGGGGATA
ACAATGTCATTTCAGCCAGCACGAAGTAACTATTATGATTTTGATTTTAT
TATTTTAGTTGTGTGGTGGTATTATTGAGTTGTGTCTGAATGATTGATTG
GTGTTTTGTCCTGTTGTATGGACAGGGCGAAGCCATGAAAGAACCTTCGG
CGGGCACCCAAGGGTCTGGAAACGCCCCTGCCAGAACCTCCAAAGTGTCA
GATATGAAAAATACCCCCCCACCAAAATGGCCCTAAAATGTAATACAAAA
CTTTCTGGAAAGTGAAAAGAAAAAAGAAAAAAGTAAAAAATTTTTAAGTT
TTCCAAAACCCTTGGAAAAAATTTTGGAAAAAAAGTGTTTCCAAGAATTT
TTGGTTTTTGCTTTTTTTTGGAAAACTTTTTAAAAAAAATAAAATTTTCC
CCGGGGGGGGGGGCTCCTTGCGCCTCTCGAACAAAACTTTATTTTTATAT
AATATTATTTTT
back to top