DY304408

Overview
NameDY304408
Unique NameDY304408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1271
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304408 vs. ExPASy Swiss-Prot
Match: SKI16_ARATH (F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 3.128e-83
Identity = 165/316 (52.22%), Postives = 208/316 (65.82%), Query Frame = 3 
Query:  123 MGLESVGDLALNVILSGLGPKDTAKVACLSKRFKAAASEECLWSKFCXXXXXXXXXXXXXGNPAPSFKAAYQIWREAFGMYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFCGHLVNVYLIPLSHIIMETKE-IRRHLDFPSRDKYVVVASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGACCNHDSPQDGMLLWFKKHARRLHKGIIQLPDEEKSQFINPFS*RNPPPAPMAGTQGWENFLAPSVF 1067
            MGLE  GDL L+++LS +GP++TA+VAC+SKR K +ASEE LWS FC             G+PAPSFK AYQ+WRE+F MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LYRF DGQE  + +    GS+GLIGGYS   H VNVYL+PL  ++ ETKE   R L F SR   +V+A+S   S K F L+CT GQL+ GT N     +++PCVP+AL+      N D  QD MLLW ++H RRL  G I +  +   + I+ F    PP   ++ T G +   A SVF
Sbjct:    1 MGLEDAGDLVLHIVLSKIGPENTARVACVSKRLKVSASEESLWSIFCSNDLNISTPLDPHGDPAPSFKRAYQLWRESFRMYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLYRFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRLDLIVMAASVVASLKIFLLDCTTGQLFTGTSN----RQLLPCVPDALVRSVHDTNGDQQQDAMLLWLEEHGRRLQTGTINVRQQNNVKSISLFP-EIPPLCSVSVTNGVQ-VRASSVF 309
The following BLAST results are available for this feature:
BLAST of DY304408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI16_ARATH3.128e-8352.22F-box protein SKIP16 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ22RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304408 ID=DY304408; Name=DY304408; organism=Citrus clementina; type=EST; length=1271bp
ACGAAAGCTACACACCCTTTGTCTTTGTCTTCTTCATCTCATAAATCTCT
TACTCGACCGACATGACAACAATATTCACCTGAACTGAGCGAAGGGAGAG
ACCCAAAAAAAAAAAAAAAATTATGGGTTTGGAGAGTGTTGGCGATTTGG
CTTTGAACGTAATACTATCAGGGCTGGGGCCAAAAGACACGGCCAAAGTG
GCATGTCTCAGCAAAAGATTTAAGGCTGCTGCCTCTGAAGAGTGTCTCTG
GTCCAAATTTTGCTCCGATGATCTTGATCTTGCCTCCCCTCTTGACCCTC
TTGGAAACCCTGCTCCTTCTTTCAAGGCAGCTTATCAGATATGGCGGGAA
GCTTTTGGCATGTATCCATGGCCTCTTGTCAAACGAGTTAAAAGATGTTG
GGATAGACTTAAAAACTGGTTGGCGGAAAATTTCCCAGAGGCTAAGGCTA
CTCTTCGAAAGGGTGCATCAGAAGCAGATATTCAACAGCTGGAAAAAAGT
TTGAAAGTTAAGCTGCCCGTCCCGACAAGGATTCTCTATCGTTTTTGTGA
TGGTCAAGAATGCCAGACTGATGATTTTGAAAGCATAGGTTCAATGGGCC
TCATTGGTGGATACTCTTTTTGTGGGCATCTGGTAAATGTATACTTGATA
CCTTTGAGTCACATTATTATGGAAACAAAGGAGATCAGACGCCACTTGGA
TTTTCCCAGCAGAGATAAATATGTGGTTGTGGCCTCTTCTTCCACATATA
GTGAAAAGTTTTTCTTCCTCAATTGTACCAATGGCCAACTATATGTTGGT
ACCAAGAATCTTCTGTCAGATGGAGAAATGATTCCATGTGTACCAAACGC
ACTGATAGCCTTGGGGGCATGCTGTAACCATGATTCACCGCAGGATGGTA
TGCTGCTATGGTTTAAAAAACATGCCCGTCGCTTACATAAGGGCATTATC
CAACTTCCTGATGAAGAAAAATCTCAATTTATTAATCCTTTTTCCTGAAG
AAACCCCCCCCCTGCCCCAATGGCCGGAACCCAAGGGTGGGAAAATTTCT
TGGCCCCTTCCGTTTTTTATTTCCGGAATTTGGCGGGAACCCGGAAAGGG
TGCCCCCCCAAAAAATTATTTTGTTTTGCTTTTTTTCTAATTTCCCTAGG
GTTCTCTCACCGGCCCCGGAAAGGGGAGGCCCTCCCAAAAAAAAGGGGAA
AAGGAACCATTTTTCCCCCCTCTCTTTTTGTCTCACCCACGGGCCCACAC
CCCCGAATAGGGCCGGCACCT
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