DY304410

Overview
NameDY304410
Unique NameDY304410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1276
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304410 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 4.589e-50
Identity = 104/157 (66.24%), Postives = 119/157 (75.80%), Query Frame = 2 
Query:  209 GDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 679
            GD+ LVLTTDPKPRLRWT ELH+RFVDAV QLGGPDKATPKTIMR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S      A + D          M++++ N+         +QMEVQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct:   23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170
[Close]
BLAST of DY304410 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.486e-13
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:  239 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 403
            P PRLRWT ELH  FV AV  LGG  KATPK +++ M VKGLT+ H+KSHLQ YR
Sbjct:   22 PVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76
The following BLAST results are available for this feature:
BLAST of DY304410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH4.589e-5066.24Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH4.486e-1365.45Putative Myb family transcription factor At1g14600... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ24RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304410 ID=DY304410; Name=DY304410; organism=Citrus clementina; type=EST; length=1276bp
CAAAGCTGAAGCTGAATCCTTGCTGCTGAAGCTCAAAGCCCTCTCCTCCT
TTAATCTTCTCTCTTCGTTCGCTCACTCGTCTTGATTTCTTTTTCGAGAT
ACTGCATTCTTGAGTCTTTGATAGATGTACTCGGCGATTCACTCGCTGCC
ACTGGACGGTGGCCACCCCGACTTTCAAGGGGGCCCGCTCGACGGCACCA
ATCTCCCCGGCGACGCCTGCTTGGTCTTAACCACCGATCCCAAGCCCCGC
CTCCGCTGGACCGCTGAGCTTCACGACCGCTTCGTCGATGCTGTCACCCA
GCTCGGTGGCCCCGACAAAGCAACACCCAAGACTATCATGAGAACGATGG
GAGTGAAAGGCCTTACCCTTTATCATCTCAAATCACATCTTCAGAAGTAC
CGCTTGGGAAAGCAAGCGTGCAAGGAAACGACAGAGAACTCCAAGGATGT
TTCTTGTGTTGCTGAAAGTCAGGACACTGGTTCATCAACAACATCGTCAA
CCAGAATGGTAGCGCAAGATCCAAATGATGGTTACCAGGTTACTGAGGCT
TTGCGAGTACAGATGGAAGTCCAACGAAGGCTTCATGAGCAGCTGGAGGT
TCAGCGACGGCTCCAGCTCCGAATTGAAGCGCAAGGCAAATACCTACAGT
CAATACTTGAGAAAGCTTGTAAAGCTCTGAATGATCAGGCCATCGTGGCT
GCTGGGCTTGAAGCTGCTAGAGAGGAGCTTTCCGAACTTGCCATCAAAGT
TTCCAATGATTGTCAAGGGATGGTCCCTCTGGAGAACATNAAAATGCCAT
CCATATCTGAACTTGCTGCAGCTCTAGAGAGCAAGAATGCTTCCACTATA
CCCGCCTCGAATCGGTGACTGTTCTGTTGAAAGTTGCTTGACTTTCACCC
GTAATCCAGTTGTCCCCAAGGGGTCGGGGGTTCCAGGGTGCTGGCCTGAA
AAAAAAAACCAAAACCCTTTGTTTGGGTAGTGGAAATTCTTTGCCCTTGG
GAGGGAAAACCTGAGGCCAAGAAATAAAAAGGGGGGGATGCCCCCAATTT
GGATGGAACCAAAAAATGGGTATTTTGTTCCCTTTAAAAAGGGGGAAACC
CCATTTTTAAATTTTTTTTCTTTTTTTTCTTTTCCCCTGTGGCCTGAGTT
TTACCCCAAAAAGGGTCCCCCCCCCCCGGGGGGGGCCCAACGGGGTGGTT
CCCACCACGCGGGGGGGGCCCGGCGGGAAAAATTTTTCTCCCAAAAAAAG
ACACGCAAAAAGAAAAATAATTTTTT
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