DY304415

Overview
NameDY304415
Unique NameDY304415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304415 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 6.188e-111
Identity = 218/346 (63.01%), Postives = 258/346 (74.57%), Query Frame = 1
Query:   16 LLMFIFPLQLTASMQLQGNNA--THSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATEST---QHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNEEAWAKLTTDQLNEAGSGGTKLFTTTLNSGVTKRKENRYNAVEK 1038
            L +F   L  +A+  L  N +  + SGQINSNSVLVALLDS YTEL+ELVEKALLLQ LEDAVG+H+ITIFAP+NEALERDLDPEFKRFLLEPGNLKSLQTLL+ HI+  R+  N+  +E +   +HHTL +D V L S+  G K +  +++I P+ + RPDG+IHGIERLLIPRSVQ+DFN RR+L+SISAV PEGAPEVDPRTNRLKKP      GS PALP+  AM                  HHF+GE QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPN+EA AKLTTDQL+E G+    ++   +    T  +E+ YN+V +
Sbjct:   14 LFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRL-SNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSAMAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQT--EESMYNSVRR 356          
BLAST of DY304415 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 2.690e-106
Identity = 214/343 (62.39%), Postives = 252/343 (73.47%), Query Frame = 1
Query:   10 FLLLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNEEAWAKLTTDQLNEAGSGGTKLFTTTLNSGVTKRKENRYNAVEK 1038
            FLLL+F+     TA      +N    GQINSNSVLVALLDSHYTEL+ELVEKALLLQ LE+AVGKH+ITIFAP+N+ALER+LDP FK FLLEP NLKSLQ+LL+ HI+  RI   +  + S  H TLS+D + LT  D     +  +++I P+ V RPDG+IHGIERLLIPRSVQ+DFN RR+LRSISAV PEGAPEVDPRT+RLKKP+PA   G+ P LP+Y AM                   HFNG+ QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPN+EA AKLTTDQL+E G+    ++   +    T  +E+ YNAV +
Sbjct:   10 FLLLLFLTTSIATALP----DNKPVPGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWPSLSHHHRTLSNDHLHLTV-DVNTLKVDSAEIIRPDDVIRPDGIIHGIERLLIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSPAVPAGAPPVLPIYDAMSPGPSLAPAPAPGPGGPRGHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQT--EESMYNAVRR 345          
BLAST of DY304415 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 4.589e-106
Identity = 217/353 (61.47%), Postives = 255/353 (72.24%), Query Frame = 1
Query:    7 SFLLLMFIFPLQLTASMQLQGN-NATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATEST---QHHTLSSDSVELTSH---DSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKK-PTPASKP-GSSPALPVYYAMXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNEEAWAKLTTDQLNEAGSGGTKLFTTTLNSGVTKRKENRYNAVEK 1038
            S + + F F   L AS    G+ N T SGQINSNSVLVALLDS YTEL+ELVEKALLLQ LEDAVG+H+ITIFAP+NEALERDLDP+FKRFLL+PGNLKSLQTLLL HI+  R+  N+   E++   +H TL  D V   S     +G + ++ + +  P+ + RPDG+IHGIERLLIPRSVQ+DFN RRNLRSISAV PEGAPE+DPRTNRLKK  T  S P GS P LP+  AM                 H HFNG+ QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPN+EA  KLTTDQL+E G+    ++   +    T  +E+ YN+V +
Sbjct:    9 SVITIFFSFFFLLNASALESGHHNITGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPVLPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMGKLTTDQLSEPGAPEQIMYYHIIPEYQT--EESMYNSVRR 359          
BLAST of DY304415 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 2.784e-103
Identity = 204/341 (59.82%), Postives = 248/341 (72.73%), Query Frame = 1
Query:   16 LLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNEEAWAKLTTDQLNEAGSGGTKLFTTTLNSGVTKRKENRYNAVEK 1038
            L   +F L LT S+     +   SGQINSNSVLVALLDSHYTEL+ELVEKALLLQ LE+AVG+H+ITIFAP+N+ALE++LDPEFK FLL+P NLKSLQ+LL+ HI+  RI   + ++    H TLS+D +  T+       ++ +++  P+ + RPDG+IHGIERLLIPRSVQ+DFN RR+LRSI+AV PEGAPEVDPRT+RLKK       G+ P LPVY AM                  HHFNGE QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPN+EA AKLTTDQL+E G+    ++   +    T  +E+ YN+V +
Sbjct:    4 LSKLLFFLLLTISITTALPDKPGSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITSPQFSSAVVSHRTLSNDHLHFTNGK-----VNSAEITKPDDLTRPDGIIHGIERLLIPRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQT--EESMYNSVRR 337          
The following BLAST results are available for this feature:
BLAST of DY304415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA17_ARATH6.188e-11163.01Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA16_ARATH2.690e-10662.39Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA18_ARATH4.589e-10661.47Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA15_ARATH2.784e-10359.82Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YK05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304415 ID=DY304415; Name=DY304415; organism=Citrus clementina; type=EST; length=1290bp
CTCATTTCATTTCTTCTTTTAATGTTTATATTCCCTCTCCAACTCACGGC
TTCAATGCAATTGCAAGGAAACAACGCAACTCACTCTGGCCAAATCAACT
CCAACTCAGTCCTGGTCGCACTTCTCGACTCGCATTACACCGAACTCTCT
GAGCTCGTCGAGAAAGCTCTCCTCTTGCAGCCACTCGAAGATGCTGTCGG
CAAGCACAGCATCACCATTTTCGCTCCCAAAAATGAAGCTTTGGAGCGGG
ATCTCGATCCCGAGTTCAAGCGCTTCTTGCTCGAGCCAGGCAACTTGAAG
TCTCTTCAGACGCTTTTGCTTCATCACATTGTCTCCACGCGAATAGAGTT
AAACCGGACTGCCACCGAGTCAACTCAGCATCATACACTGTCCAGTGATT
CAGTCGAGCTAACGAGTCATGATTCGGGTGATAAATTTATAAGTCAATCC
AAGGTCATTCATCCGAACGCCGTGGACCGTCCAGATGGAGTCATCCACGG
CATCGAACGGCTGCTAATCCCTCGATCCGTACAGCAAGATTTCAACAACC
GAAGGAATCTCCGTTCAATCTCAGCCGTTAGACCGGAAGGAGCACCAGAG
GTCGACCCGAGGACAAACCGGTTGAAGAAACCGACACCAGCCTCCAAACC
CGGCTCATCTCCGGCCCTTCCGGTTTACTACGCAATGGCTCCCGGTCCTT
CACTAGCTCCGGCCCCGGCACCAGGGCCGGGCGGGCCGCACCACCACTTC
AACGGAGAGAAGCAAGTGAAGGATTTCATCCAAACGCTTTTACACTACGG
CGGGTACAACGAAATGGCCGATATTTTAGTGAATCTGACGTCGCTGGCAA
CGGAAATGGGGCGGCTTGTGTCGGAGGGATATGTTTTGACGGTATTGGCG
CCGAATGAAGAAGCCTGGGCTAAGCTGACGACCGACCAACTGAACGAAGC
CGGAAGCGGCGGGACAAAATTATTTACTACCACCTTGAATTCCGGAGTAA
CCAAACGGAAGGAAAACAGGTACAATGCCGTGGAAAAAATTCCGGAAAAA
ATTCTAAACAAAACCCCGCCTTTTGCCGGAAAAAAATTTTTTGCCCACAG
GAAAGCTGAAAGGGGTTTGGTTAAAATTCCCGCCCGGGGGGAACCGAAAA
CCGCCCCCAATTTTTTTTTTAAACCCCCCAAATTTTTAAAACCCCAGAGG
GGCCCCAAAAATTTTTGGGTTTTTCACGGGAGAGAAAATTTGAACACGGG
GGGGTGTTTTTTTTGTTTTTTCCCTCCCCCCCCCCCCCGA
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