DY304418

Overview
NameDY304418
Unique NameDY304418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304418 vs. ExPASy Swiss-Prot
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.415e-62
Identity = 138/217 (63.59%), Postives = 149/217 (68.66%), Query Frame = 3
Query:    3 LLSMYLDMDKFNASTATSGFQVXXXXXXXXXXXXXXXXXXXXXXXXENVGVGSTERPRIRHQHSQSMDGSTSIKPEMLMSASDEXXXXXXXXXXXXXXXXXXXXIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNYPSF 653
            LLSMYLDMDKFN+S ATS  QV                        +N      ERPRIRHQHSQSMDGS +I  EMLMS +++                    IDPKRAKRIWANRQSAARSKERK RYI ELERKVQTLQTEAT+LSAQLTLLQRDTNGLT EN+ELKLRLQTMEQQVHLQD LN+ALKEEIQHLKVLTGQ  P+    +NY SF
Sbjct:   98 LLSMYLDMDKFNSS-ATSSAQVGEPSGTAWKNETMMQTGTGSTSNPQNTVNSLGERPRIRHQHSQSMDGSMNIN-EMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQVAPSA---LNYGSF 309          
BLAST of DY304418 vs. ExPASy Swiss-Prot
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.581e-51
Identity = 118/217 (54.38%), Postives = 132/217 (60.83%), Query Frame = 3
Query:    3 LLSMYLDMDKFNASTATSGFQVXXXXXXXXXXXXXXXXXXXXXXXXENVGVGSTERPRIRHQHSQSMDGSTSIKPEMLMSAS---DEXXXXXXXXXXXXXXXXXXXXIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNY 644
            L SM+LD++K N++   S                                  +    R +HQHS SMD S SIK E L+ AS   +                     +DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEAT+LSAQL LLQRDT+GLT ENSELKLRLQTMEQQVHLQDALND LK E+Q LKV TGQ    GG MMN+
Sbjct:   85 LFSMFLDVEKLNSTCGASS------------EAEAESSSAGAAAAVAAAAAAAAHGARPKHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQMANGGGMMMNF 289          
BLAST of DY304418 vs. ExPASy Swiss-Prot
Match: RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.826e-40
Identity = 89/147 (60.54%), Postives = 104/147 (70.75%), Query Frame = 3
Query:  171 PRIRHQHSQSMDGSTSIKPEMLMSASDEXXXXXXXXXXXXXXXXXXXXIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 611
            PR +H+HS S+DGS         +A+                      IDPKRAKRI ANRQSAARSKERK RYI ELERKVQTLQTEAT+LSAQLTL QRDT GL+AEN+ELK+RLQ MEQQ  L+DALNDALK+E++ LK+ TG+
Sbjct:   83 PRPKHRHSSSVDGSGFFAAARKDAAASLAEVMEAKKAMTPEQLSDLAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGE 229          
The following BLAST results are available for this feature:
BLAST of DY304418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
POF21_ARATH5.415e-6263.59Probable transcription factor PosF21 OS=Arabidopsi... [more]
RF2A_ORYSJ9.581e-5154.38Transcription factor RF2a OS=Oryza sativa subsp. j... [more]
RF2B_ORYSJ5.826e-4060.54Transcription factor RF2b OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YK09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304418 ID=DY304418; Name=DY304418; organism=Citrus clementina; type=EST; length=655bp
ACTTACTGTCTATGTATCTTGATATGGATAAGTTCAATGCTTCTACAGCA
ACGTCGGGTTTTCAAGTGGGTGAGCCATCAGCGGCTGCAGCTCCAGCACC
CACATCGGCGGTGGCTGCTGGCAGTGGAATTTCTTCTGTAGAGAATGTGG
GTGTTGGATCTACTGAGAGGCCTAGGATTAGACATCAGCACAGCCAGTCA
ATGGATGGTTCGACGAGTATTAAGCCAGAAATGCTCATGTCAGCTTCAGA
TGAGGCGCCTTCTGCTGATTCGAAGAAAGCTATGTCTGCTGCTAAGCTTG
CTGAACTAGCACTCATTGATCCAAAGCGTGCAAAGAGAATCTGGGCAAAT
AGGCAGTCAGCTGCAAGGTCGAAGGAAAGGAAGATGCGATACATAGCTGA
GCTTGAACGTAAAGTACAGACATTACAAACTGAAGCAACCTCATTGTCTG
CTCAATTGACATTATTGCAGAGAGATACTAATGGTCTGACTGCTGAAAAT
AGTGAATTGAAACTGCGTTTGCAAACGATGGAGCAACAAGTCCACTTGCA
AGATGCCCTAAATGATGCACTGAAGGAGGAGATTCAGCATCTGAAGGTAT
TGACTGGCCAAGCAATGCCTAATGGTGGACCAATGATGAACTATCCGTCT
TTTGG
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