DY304421

Overview
NameDY304421
Unique NameDY304421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304421 vs. ExPASy Swiss-Prot
Match: PIN1_MALDO (Peptidyl-prolyl cis-trans isomerase 1 OS=Malus domestica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.103e-27
Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = 3 
Query:  126 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKR 335
            NQVRASHILIKHQGSRRKASWKDPEG++I NTTR+SAVSQL+A+RDDI+SGKAKFD++A+R SDCSSAKR
Sbjct:    7 NQVRASHILIKHQGSRRKASWKDPEGQIIRNTTRDSAVSQLKALRDDILSGKAKFDDLAARYSDCSSAKR 76
[Close]
BLAST of DY304421 vs. ExPASy Swiss-Prot
Match: PIN1_ARATH (Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.005e-25
Identity = 55/70 (78.57%), Postives = 66/70 (94.29%), Query Frame = 3 
Query:  126 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKR 335
            +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+EVA+R+SDCSSAKR
Sbjct:    5 DQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKR 74
[Close]
BLAST of DY304421 vs. ExPASy Swiss-Prot
Match: PIN1_DIGLA (Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.484e-20
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 3 
Query:  123 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKR 335
            + +VRASHILIKHQGSRRK+SWKDP+G +IS TTR+ AVSQLQ++R +++S  A F ++ASR S CSSAKR
Sbjct:    3 SEKVRASHILIKHQGSRRKSSWKDPDGSLISATTRDDAVSQLQSLRQELLSDPASFSDLASRHSHCSSAKR 73
The following BLAST results are available for this feature:
BLAST of DY304421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PIN1_MALDO1.103e-2784.29Peptidyl-prolyl cis-trans isomerase 1 OS=Malus dom... [more]
PIN1_ARATH3.005e-2578.57Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidops... [more]
PIN1_DIGLA6.484e-2066.20Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YK12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304421 ID=DY304421; Name=DY304421; organism=Citrus clementina; type=EST; length=1280bp
CGAAAATTTAGTCAGATCGAAAGAGAAAGAATAGTTCGATCTCATCCTCA
GATCGAAGGCCAACAACAAACGACAAGGAAAGAGATAAGAGTAGTCACAA
GAAGAAACCAAAAATGTCGTCGGCCAATCAGGTGAGGGCATCTCACATCT
TGATCAAGCATCAAGGTTCTCGAAGGAAGGCTTCGTGGAAGGATCCGGAA
GGTAGAGTCATCAGCAACACCACTAGAGAGAGCGCCGTCTCTCAACTCCA
AGCCATCCGAGACGACATCGTTTCCGGCAAGGCCAAGTTCGATGAAGTCG
CCTCTCGCCTCTCCGATTGCAGCTCCGCCAAACGCGGCGGTGATCTCGGT
TAGTTCCTAATTCTTTTTCTAAAAATTGTTGTTTTCTCCAGTATTGAAAT
TTGAATGCTTCTCTCTCTTTTTTTTTAAAGCATATCAGGGATGTGAAATT
AGTGTGTTGATGTTACTTCAATTAAAATTATTGCTAATTATAGAAAAGAA
ACTTCACTTTAGTTGCAATAATAGCTCCAATTTTGTGGTTCTAGTATTAC
GGTTACCATTATGTTAACTTGCTGCTTTCTGCGCTATGAAAATATGAATA
TTCCAGATTGAGCTTCTAAACTGTGGCTGTCATGATGCTTATAAGAATTA
TTATCTGGTGCAAATGTATGCATTTTCCTATTGTCCAGATTGTGACTGAA
TTCTTTGGCGGAAGATTTGAAGACAAAATTGTGAATTCCAATTTTTTAGC
AATTCTTCATATCGAGTTGTTGGTCTATATTTTAAGCAAATGTGGACATT
TCAGGGGAGAACTAATCATCTGTACGGTTAATGGAGCAAAGAATTTTTTT
TTTAGTGGAATTTTACTTGGCCCTTGTCCGGGTTGGTACCCGTCCCTCTT
GGGGAATTTTATTATGGTATTGAATTGATCTTTCTTTAACTAAACCCATT
TGTAAAAAACGCTTGCCAAAAAGTTTTTGCCAAATGCTTACGGTTTCTTT
AAAAAAAAAAAAGGGCCTGAAAAGGGGCAATGATATTCCTTTTTTTTTTT
TTGATCCCCCCAAAATTGCCCACAAAATAAAACCCTCCCCTTTTTCTGAA
AAAGGGGAAAAGGGTTTCTTACATTTTTTCTTTAATTTTGAACCCTCTTA
AATTGGCCGGGCAGGAGTTACCCCCCCCCCCCTCTCAATTTCCTTTCTCC
GCTTTTTTGTGAAAAAAACTTTAGAGGGGGGGAAATAAAATTTTTTTTCT
CACCCCACCCAGGGGGTGAGTGGAATAAAA
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