DY304425

Overview
NameDY304425
Unique NameDY304425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1154
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304425 vs. ExPASy Swiss-Prot
Match: ATX3H_ARATH (Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 4.366e-97
Identity = 174/207 (84.06%), Postives = 187/207 (90.34%), Query Frame = 2
Query:  323 MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGR-VPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVKGNFPKECPI-SSSDSSNGYGQGLSPENAERITKS 937
            ME  SNGGMLYHEVQES LCAVHCVNTVLQGPFFSEFDLAA+A+DLD  ERQVMLEG  V   + GDFL EESHNVSL GDFSIQVLQKALEVWDLQVIPLNCP AEPAQIDPELE+AFICHLHDHWFCIRKVNGEWYNFDSL AAP+HLSKFYLSA+LDSLKG GWSIFIVKGNFP+ECP+ SSS++SN +GQ LSPE+AERI K+
Sbjct:    1 MERTSNGGMLYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAVGGFAPGDFLAEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFICHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQECPMSSSSEASNSFGQWLSPEDAERIRKN 207          
BLAST of DY304425 vs. ExPASy Swiss-Prot
Match: ATX3_ORYSJ (Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica GN=Os01g0851400 PE=3 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 9.125e-87
Identity = 157/213 (73.71%), Postives = 178/213 (83.57%), Query Frame = 2
Query:  332 ASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASS--GDFLTEE--SHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVKGNFPKECPISSSDSSNGYGQGLSPENAERITKSCNKRKGP 958
            ASNGG+LYHEVQE KLCAVHCVNT LQGPFFSEFDL+ALA DLD+ ERQVM EG   AA++  GDFL E   SHNVSL GDFSIQVLQKALEVWDLQVIPL+ P       DPELE AFICHL DHWFCIRKVNGEWYNF+SLY APEHLSKFYLSA++D+LKG GWSIF V+GNFPKECP+ +++ SNG+GQ L+P++A RIT SCN+ + P
Sbjct:    7 ASNGGLLYHEVQEGKLCAVHCVNTTLQGPFFSEFDLSALAVDLDQRERQVMSEGAAGAATTAAGDFLAEGEGSHNVSLGGDFSIQVLQKALEVWDLQVIPLDSPDVGSCLFDPELETAFICHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFYLSAFIDTLKGSGWSIFAVRGNFPKECPM-ATEGSNGFGQWLTPDDARRITSSCNQVQTP 218          
BLAST of DY304425 vs. ExPASy Swiss-Prot
Match: ATX3_HUMAN (Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 5.077e-37
Identity = 74/167 (44.31%), Postives = 107/167 (64.07%), Query Frame = 2
Query:  350 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVKGNFP 850
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+VKG+ P
Sbjct:    4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170          
BLAST of DY304425 vs. ExPASy Swiss-Prot
Match: ATX3_RAT (Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 8.660e-37
Identity = 74/167 (44.31%), Postives = 107/167 (64.07%), Query Frame = 2
Query:  350 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVKGNFP 850
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+VKG+ P
Sbjct:    4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170          
BLAST of DY304425 vs. ExPASy Swiss-Prot
Match: ATX3_MOUSE (Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 8.660e-37
Identity = 74/167 (44.31%), Postives = 107/167 (64.07%), Query Frame = 2
Query:  350 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVKGNFP 850
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+VKG+ P
Sbjct:    4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170          
BLAST of DY304425 vs. ExPASy Swiss-Prot
Match: ATX3_CHICK (Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.929e-36
Identity = 74/167 (44.31%), Postives = 106/167 (63.47%), Query Frame = 2
Query:  350 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVKGNFP 850
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +   IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+VKG+ P
Sbjct:    4 IFHERQEGSLCAQHCLNNLLQGEYFSPVELSSIAQQLDEEERMRMAEGGVSSEEYRTFLQQPSVNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLGIDPINEKSFICNYKEHWFTVRKLGKQWFNLNSLLMGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170          
BLAST of DY304425 vs. ExPASy Swiss-Prot
Match: ATX3L_HUMAN (Putative ataxin-3-like protein OS=Homo sapiens GN=ATXN3L PE=5 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 6.862e-34
Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  350 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVKGNFP 850
            ++HE QE  LCA HC+N +LQG +FS  +LA++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+ W L++I  N P  +   IDP  E +FIC+   HWF IRK    W+N +SL A PE +S   L+ +L  L+   +S+F+VKG+ P
Sbjct:    4 IFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLP 170          
BLAST of DY304425 vs. ExPASy Swiss-Prot
Match: ATX3_CAEEL (Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-3 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.446e-23
Identity = 57/168 (33.93%), Postives = 95/168 (56.55%), Query Frame = 2
Query:  350 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVKGNFPK 853
            ++ E QE+ LCA H +N +LQ   +   DL  LA  +D+ E+Q++         + +     S N++  G FSIQVL+KALE + L++  +  P     + +P    A+IC+L +HWF +RK   +W+  +S+   P+ LS  Y+S +L  +   G+SIF+V+G  P+
Sbjct:   10 IFFEHQEAALCAQHALNMLLQDALYKWQDLRDLAIQMDKMEQQIL--------GNANPTPGRSENMNESGYFSIQVLEKALETFSLKLTNIENPAMVDYKNNPLTARAYICNLREHWFVLRKFGNQWFELNSVNRGPKLLSDTYVSMFLHQVSSEGYSIFVVQGVLPR 169          
BLAST of DY304425 vs. ExPASy Swiss-Prot
Match: ATX3_CAEBR (Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx-3 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.484e-20
Identity = 52/167 (31.14%), Postives = 90/167 (53.89%), Query Frame = 2
Query:  350 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVKGNFP 850
            ++ E Q++ LCA H +N +LQ   F+  +L  LA  +D+ E  ++         +       S N++  G FSIQV++KALE +DL++I +  P     + +P    A++ +L +HWF +RK   +W+  +S+   P+ L+  Y+  YL       +SIF+V+G  P
Sbjct:   11 IFFERQQAALCAQHALNMLLQDSLFTYENLRDLARQMDQMEHDIL--------GNNANAVGRSENMNDSGFFSIQVIEKALETFDLKLINMENPAMAEFKANPLTARAYVLNLREHWFVLRKFGNQWFELNSVKNGPKLLTDTYVKEYLHQFAAENYSIFVVQGILP 169          
The following BLAST results are available for this feature:
BLAST of DY304425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ATX3H_ARATH4.366e-9784.06Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54... [more]
ATX3_ORYSJ9.125e-8773.71Putative ataxin-3 homolog OS=Oryza sativa subsp. j... [more]
ATX3_HUMAN5.077e-3744.31Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3[more]
ATX3_RAT8.660e-3744.31Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1[more]
ATX3_MOUSE8.660e-3744.31Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2[more]
ATX3_CHICK1.929e-3644.31Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1[more]
ATX3L_HUMAN6.862e-3443.71Putative ataxin-3-like protein OS=Homo sapiens GN=... [more]
ATX3_CAEEL2.446e-2333.93Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-... [more]
ATX3_CAEBR1.484e-2031.14Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YK16RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304425 ID=DY304425; Name=DY304425; organism=Citrus clementina; type=EST; length=1154bp
CGGAAAGGAAAACAGTATGGAGGAAAAGCGCTTCCTTCACTGCTTGCAAG
TTGGCAAGTCTGAAACCCTCAGTACGCGTTCTCAATGACTCCTTACTTTC
TTCAAGTCACGCCAAGCAAAGCAAATACCGATTATATATTTATATTTATT
TAATGAATAAAATTATAAATTCTTTTCCCTCATCTTCCTCTTCTCTCCAT
CGAACATTCGAAACTGAAAAACCTTTCCTAAGAAACCCGCTGTTACAATA
ATATCGCAAATAGAAAAAAAAAAATCTAGGTTTTGTTACCTGGTGCACAT
AAGAGTTTGTTTTTTTTTATTAATGGAAGGGGCGAGCAACGGAGGGATGT
TGTACCACGAGGTACAAGAGTCGAAGCTATGCGCGGTGCATTGCGTGAAC
ACGGTGTTACAAGGTCCGTTTTTCTCGGAGTTCGATTTGGCGGCGCTGGC
TTCGGATCTCGATCGTAGTGAGCGCCAGGTGATGCTCGAAGGTCGCGTCC
CCGCTGCTTCCTCCGGCGATTTCCTCACCGAGGAGTCTCATAACGTCTCT
CTCGACGGCGATTTCAGTATCCAGGTTCTGCAAAAGGCTTTAGAGGTGTG
GGATCTGCAAGTCATTCCCCTTAACTGCCCAATTGCTGAACCTGCCCAGA
TTGACCCTGAGCTAGAAAATGCGTTTATCTGTCATTTGCACGACCACTGG
TTCTGTATCAGGAAAGTGAATGGAGAATGGTATAATTTTGACAGTCTTTA
TGCAGCCCCAGAGCACCTCTCAAAGTTTTACCTGTCAGCCTATCTGGATT
CGCTAAAAGGCTTTGGCTGGAGTATTTTCATTGTGAAGGGAAACTTCCCG
AAAGAGTGCCCCATCTCATCCTCTGATTCTTCCAATGGTTATGGGCAGGG
GCTTTCCCCTGAAAATGCCGAAAGGATTACCAAATCATGCAACAAAAGAA
AGGGCCCAAAAAAAACAAATTTGATCCACAGCCTTCCGAATCCTATTTCT
TCTGCCGAAGGAAGGCGAAAAGGCCTTTTGGAAAATGGAAAAGAAGGAAT
TTAAAGGGGGGCAATACCCGGCAATTCTTTTTGGAAATTCCTCCCCCCCC
AAACCCCATTCGGCGCAAAACCCCCACACCACCCCCAACCAAACCCCCCC
CGCG
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