DY304434

Overview
NameDY304434
Unique NameDY304434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1274
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304434 vs. ExPASy Swiss-Prot
Match: MAPT_ARATH (Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 2.985e-25
Identity = 68/182 (37.36%), Postives = 106/182 (58.24%), Query Frame = 2 
Query:  371 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMS----------LNITKPSFSV--LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEHLRKLLPRLGKAM 880
            +LKQ+++T ++KLADRDT  +A  +LE   ++LT ++   FLNCL  + S  K  V+K+C++LL+ +   H DS + HL+K+I+ +  RL+D DS VR AC     A+S           N    S +V    KPL E  + EQ+   Q G +MC+A  +++A +P V   +KL PR+ K +
Sbjct:   41 ELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFE-AMGEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKLL 221
The following BLAST results are available for this feature:
BLAST of DY304434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MAPT_ARATH2.985e-2537.36Microtubule-associated protein TORTIFOLIA1 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YL02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304434 ID=DY304434; Name=DY304434; organism=Citrus clementina; type=EST; length=1274bp
ATAAGTTCCTCGTTATATTTCAGAAATAATTCATCAAATTTTTTTTTTCA
AAAACCAACGATTTAACCGCGCTTTTTACACTAAGACGAAAAAACCGGTG
TGGCGGTTGAAATTTCCGAATTTGCAACTCCACACTCCTTGCCTTCCCTC
TCTAACATTTAAGAGACCAACCCGAAACCTCGATCTCGATGCTCAGGCTT
AACTAACGCCCTCGTACCTTCTTTTCTCCTCACTTCACTCTTCAGTCTTC
AACAAAACGGCTCATTTCAATGCCAAAATACTGAACCCAAAAATAATAAT
AATAATAAAGATAATCAAAATGTCTCCTCAAAAGCGATCCTCTTCAGCTT
CACCTCCGCCGTCAACTAACGACCTGAAGCAGCGAGTCATCACGTGCCTC
AACAAACTCGCAGACCGCGACACACTTCCCGTAGCCACGGCCGAGCTCGA
GTCCATCGCTAGGACCCTAACTCAAGACTCGTTCTCTTCGTTCCTTAACT
GCCTACAAACCACCGACTCGTCTTCAAAATCGCCTGTTCGCAAGCAATGT
GTGAACCTCTTAACTCTACTTTCTCGGTCGCACGGAGACTCTCTCTCTCC
TCACTTATCCAAAATGATCTCCACCGTCAGCTGCCGTTTACGCGATCCAG
ACTCATCCGTTAGATCCGCATGCGTTGCGGCCACCACTGCCATGTCATTG
AACATAACGAAACCGTCGTTTTCGGTCCTGTCGAAACCGTTGATTGAGTT
GATTCTAGTTGAGCAAGATGTGAACTCGCAGGTCGGCGGGGCGATGTGTT
TGGCGGCGGCGATAGATGCGGCGCCGAATCCGGAGGTGGAGCATTTGCGG
AAGTTGTTGCCAAGGCTGGGGAAGGCAATGAGGATCCAGGGGGTTTAAGG
CGAAAGCGGCGGTGGTGGGTGTTATTGGGGAGTGGTGGTCCAATTTGGTG
ACCCCAAAATTAAGGGAATTTTGGGAATGGCTTTGTGGCCGGTTTGGTTG
AGTTTTTGTGTTTGCAATGAATGGGCCCCCCCCAAAAGGGCCCCCGCCGG
AAATGTTGGGGGAAGGGGGGCTGGCCCTCCAAAAAGAGACCTTGGCCAAC
TGAATTTTAAACACCGTTCTGGTTTTGGGCGCCCCCCGCGAAAAACCTAA
AAAAAATTTTACAAAAGGGTAAAAAAAAATTGTGTTAAAAAAAAGAAAAC
CCCAAGAAATTTTCTTCTCCTTCTTGGGTGAAAAAAGTTGTGGAAAAGAA
GGGGGGAGAGAGGTTGTTCCCCGC
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