DY304435

Overview
NameDY304435
Unique NameDY304435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1274
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: AFR_ARATH (F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 7.470e-85
Identity = 161/286 (56.29%), Postives = 197/286 (68.88%), Query Frame = 3
Query:  192 TQPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMP--CPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTXGWTWPFMFSPRGGVYHINKDTWNLMSDGMKEGRTGISIVA*GQGFL-----GYRTRVTGQ*NQYNPDDEPWR 1028
            +QPLI GLP++I ELCLL +PYPY AL RSVS SWNK IT+P F   K+SLS+S PYLF+F+F+K TARIQWQ+LD  SGRWFVLPPMP    K   P A +C S+PRQGKLFVLGG   D     +S ++Y A TN+W   SPM++PR++F SGNVNGKIMAVGG+     E  T VE YDP++DTWT   KL M LA+YDSAV+G +M VT GW WPFMF P G VY  ++ TW  MS GMKEG TG+S+V   + F+      +  +V      Y  DD+ WR
Sbjct:   25 SQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAFNKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGG--GDVN---RSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGNGEATTEVESYDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQVYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKV------YCSDDDTWR 299          
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 3.384e-53
Identity = 103/251 (41.04%), Postives = 141/251 (56.18%), Query Frame = 3
Query:  195 QPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAI-TDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTXGWTWPFMFSPRGGVYHINKDTWNLMSDGMKEGRTGISIV 944
            +PLIPGLPD++   CLL VP       +SV   W+    T   F   +K      P+LF+  F + T +IQW+ LD R+  W  +P MPC   VCP  F   S+PR+G +FV GGM SD++ P+   + Y    N W + + M+T RSFFASG ++G I A GG  A++ E +   E  +P    W   + +   +A YD+AV+  K+ VT GW WPF  SPRG VY    D W  MS G++EG TG S+V
Sbjct:   51 EPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYE-LDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVV 300          
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.035e-22
Identity = 69/242 (28.51%), Postives = 105/242 (43.39%), Query Frame = 3
Query:  198 PLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTXGWTWPFMFSPRGGVYHINKDTWNLMSDGMKEG 923
            PL+PGLPD++   CL+ VP      +R V   W +  +   F   +K L +S  ++++F   +   +I W   DP S  W  LPP+P   +     F C  L   G    L G +      M+  I Y A TN+W  A  ML  R FF    +N  +   GG    I  T+ + E YDP  + W+  A +   +      V   K ++    +   + S     Y    ++W+ +SDGM  G
Sbjct:   77 PLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDRD-GKISWNTFDPISQLWQPLPPVPREYSEAV-GFGCAVL--SGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMSE---AYDPEVNSWSPVSDGMVAG 311          
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.535e-18
Identity = 74/280 (26.43%), Postives = 122/280 (43.57%), Query Frame = 3
Query:  198 PLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATT--NQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTXGWT-WPFMFSPRGGVYHINKDTWNLMSDGMKEGRTGISI-VA*GQGFLGYRTRVTGQ*NQYNPDDEPW 1025
            PLIPGLPD++ + CL  VP      + SV   W   +    F   ++   +   +L++ + +      +W+ +D    +   LPPMP P     +          GKL V+ G      + + S  +Y+  T  N W   + +   R  FA   VNG +  VGG G +  E++++ E YDPE+ TWT    LR       ++    K+YV  G + +    S    VY+    +W+    G K G T ++  V  G+       +   + + +N +DE W
Sbjct:   38 PLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKTGFKVVVV-----DGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVD-GESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTIGNSKLLDVYNTQCGSWH----GSKNGLTMVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETW 307          
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: FBK5_ARATH (F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.940e-16
Identity = 55/197 (27.92%), Postives = 93/197 (47.21%), Query Frame = 3
Query:  195 QPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCP----QAFACTSLPRQGKLFVLGGMRSDTET--PMQSTIMYRATTN------QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 749
            Q +IPGLPD++   C+  + + Y  ++  VS  W   +    ++  K     S  +LF+ +     ++ QW A DP + RW    P+P  +AV        FAC  +     L V+GG  + + +  P Q  ++ +          QW++ + M TPR+ FA  +V+GK+   GG     +  + + E YDP +D W
Sbjct:    6 QSIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLT---ERSKNQWVAYDPEADRWH---PLPRTRAVQDGWHHSGFACVCV--SNCLLVIGGCYAPSVSSFPHQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAEVYDPVADRW 194          
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: SKI30_ARATH (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 7.370e-16
Identity = 62/199 (31.16%), Postives = 84/199 (42.21%), Query Frame = 3
Query:  201 LIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPM----------QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL 767
            L+ G+P+ +   CL HVP      +  VS SW  AI        +K L  S   L + +F        WQ   P   RW  LP +P          A T+    G LFVLGG  SD  +P+               Y     QW   + ML PR+ FA   + GKI+  GG      ++++  E YDPE+D WT+   L
Sbjct:   11 LLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCAFDPENI---WQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTT---AGMLFVLGG-GSDAVSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGF-TTCRKSISGAEMYDPENDVWTSIPDL 201          
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: FBK8_ARATH (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.777e-15
Identity = 85/338 (25.15%), Postives = 130/338 (38.46%), Query Frame = 3
Query:  201 LIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCP--------------KAVCPQ----AFACTSLPRQ-----------------GKLFVLGGM-RSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGT--GANINETMTAVECYDPESDTWTTA----------------AKLRMGLARYDSAVMGSKMYVTXGWTWPFMFSPRGGVYHINKDTWNLMSDGMKEG------RTGISIVA*GQ--GFLGYRTRVTGQ*NQYNPDDEPWR 1028
            LIP LPDE+    L  +P    + VR VS  W  A++       +K L  +  +L++ +      ++ W ALDP S +W  LPPMP                  + P     A   + L R+                 G L+V+GG+ RS T   +     +    N W   S ML  R++  +G +N K+  VGG   G      + + E YDP +D W+                  A L   +A   +   G        ++WPF     G VY    + W  M  GM EG       T +S+V  G+   F    +   G+   Y+  ++ W+
Sbjct:   43 LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTKGHED-KLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGRRDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKT---VSCVWRFDPILNSWSEVSSMLASRAYSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAGTKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWK 376          
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: SKIP4_ARATH (F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.064e-14
Identity = 69/254 (27.17%), Postives = 106/254 (41.73%), Query Frame = 3
Query:  201 LIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGR--WFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQW-QLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTXGWTWPFMFSPRGGVYHINKDTWNLMSDGMKEGRTGISIVA*G 953
            LI G+PD+I + CL  VP  Y   ++ VS  W   +        +   +L+  +++       +  +    L+P S R  W  +   P         FA        +LFVLGG     E        Y A  N W  +  P+ T R +FA   ++GKI+A+GG G N N   T  + YDP + T  + + + +     DS VM  ++Y+  G     +      VY  +   W  M D M  G  G ++V  G
Sbjct:   21 LISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAESWIYALC-RDISGGVFLHMLNPFSSRRSWKRINDYPYIPMREGMGFAVLGK----RLFVLGGC-GWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRT-WDIYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGG-----VGGSSTAVYSASSGIWERMDDDMASGWRGPAVVVAG 262          
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: FK125_ARATH (F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.699e-12
Identity = 62/209 (29.67%), Postives = 91/209 (43.54%), Query Frame = 3
Query:  201 LIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLS----LPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPC-PKAVCPQAFACTSLPRQGKLFVLGGMRSDTET-------PMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGK----IMAVGGTGANI----NETMTAVECYDPESDTWTTAAKL 767
            LIPGL +++G L L  VPYP+ + ++S   SW   ++       + S   S    L +L       P+    +   DP +  W  LP MPC P       F   +L     ++VLGG   DT +       P  S   Y    + W+  SPM++PR  FA   + G     I+A GG+   +       M++VE YD E D W    +L
Sbjct:   38 LIPGLSNDVGRLILSFVPYPHISRIKSTCKSWYAFLSSKTLISLRHSRDNSNTNNLSHLLCIFPQDPSISPPF-LFDPVTLSWRSLPLMPCNPHVYGLCNFVAVALGPY--VYVLGGSAFDTRSYPLDVPLPTSSVFRYSFVKSVWERLSPMMSPRGSFACAAMPGSCGRIIVAGGGSRHTLFGAAGSRMSSVEMYDVEKDEWRVMNEL 243          
BLAST of DY304435 vs. ExPASy Swiss-Prot
Match: FBK16_ARATH (Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.204e-11
Identity = 50/225 (22.22%), Postives = 89/225 (39.56%), Query Frame = 3
Query:  189 NTQPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLG--------GMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTXGWTW 839
            ++ P+IPGL D++ ELC+  +P     +   V   W   +    FA  +K       +L +    +    + W+  D    +   +PP+P P     + F    L   GK+   G        G+ S T +       +    N W+  + M  PR  FA   VNG +  + G   +   +++  E Y+P+++ W+        + R  +    SK+Y      W
Sbjct:    6 SSSPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVLMESECGRDVYWEVFDASGNKLGQIPPVPGP---LKRGFGVAVLD-GGKIVFFGGYTEVEGSGINSTTVSASADVYEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTD-TYSLSNAEVYNPKTNQWSLMHCPNRPVWRGFAFAFSSKLYAVGRRQW 225          
The following BLAST results are available for this feature:
BLAST of DY304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AFR_ARATH7.470e-8556.29F-box protein AFR OS=Arabidopsis thaliana GN=AFR P... [more]
FBK17_ARATH3.384e-5341.04F-box/kelch-repeat protein At1g30090 OS=Arabidopsi... [more]
FBK22_ARATH4.035e-2228.51F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
FBK28_ARATH3.535e-1826.43F-box/kelch-repeat protein At1g67480 OS=Arabidopsi... [more]
FBK5_ARATH1.940e-1627.92F-box/kelch-repeat protein At1g16250 OS=Arabidopsi... [more]
SKI30_ARATH7.370e-1631.16F-box/kelch-repeat protein SKIP30 OS=Arabidopsis t... [more]
FBK8_ARATH4.777e-1525.15F-box/kelch-repeat protein At1g22040 OS=Arabidopsi... [more]
SKIP4_ARATH1.064e-1427.17F-box/kelch-repeat protein SKIP4 OS=Arabidopsis th... [more]
FK125_ARATH1.699e-1229.67F-box/kelch-repeat protein OR23 OS=Arabidopsis tha... [more]
FBK16_ARATH3.204e-1122.22Putative F-box/kelch-repeat protein At1g27420 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YL03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304435 ID=DY304435; Name=DY304435; organism=Citrus clementina; type=EST; length=1274bp
AAAAAAGAATAAATTAAATAAAATCACAGCGCCCAATCAGACAGCGTCAA
ACTCCGGTGACCGGCAGCATCTGTTCGTCGCGTAGCTGGAGTTACGTCAG
CCGCACCCGACTCCGTCTCTCAAGCATGGAGGTTTCTCAATCGTCTACTT
CGTCGTCGTCGAGCCAAGAAACTGAAATTTCTGGAAGGAATACTCAGCCA
CTGATTCCGGGATTACCCGACGAGATCGGGGAGCTATGTCTGCTTCATGT
TCCGTATCCGTACCAAGCTTTGGTACGTTCAGTTTCGTATTCATGGAACA
AAGCAATTACAGACCCTGGCTTCGCTCTCTGCAAGAAGAGCCTGTCACTT
TCTTTGCCTTACCTTTTCATTTTTTCTTTTCATAAACCTACGGCCAGGAT
CCAATGGCAAGCCTTGGACCCACGATCTGGCCGTTGGTTTGTTTTGCCTC
CTATGCCATGCCCTAAGGCTGTGTGCCCGCAAGCCTTTGCATGTACATCA
CTTCCACGGCAAGGCAAATTATTTGTTTTGGGCGGGATGCGGTCGGACAC
AGAGACTCCTATGCAGTCTACGATCATGTACCGTGCAACAACCAATCAAT
GGCAGTTAGCATCACCAATGTTAACACCGAGGTCATTTTTCGCCTCCGGG
AATGTTAACGGTAAGATCATGGCCGTTGGTGGAACCGGGGCCAACATCAA
CGAGACAATGACAGCCGTCGAGTGTTACGACCCGGAGAGCGACACGTGGA
CGACGGCTGCCAAGTTGCGAATGGGGTTGGCTAGGTACGACTCAGCTGTG
ATGGGGAGCAAGATGTATGTGACTNGAGGATGGACGTGGCCCTTTATGTT
TTCCCCAAGGGGTGGGGTCTACCACATCAACAAGGACACGTGGAATCTGA
TGAGCGATGGGATGAAGGAAGGAAGGACTGGGATCAGTATCGTGGCTTAA
GGGCAAGGTTTTCTTGGATATCGAACAAGGGTGACTGGTCAATGAAACCA
ATACAACCCTGATGACGAACCGTGGCGGGAGTGGGGGTTGGGGGACAAAT
TCCCATGTAAAAGTTAAGCCAAAGGCCCGTTTGCGTTGAAATGGAATTGG
AAAGGGAAAAATTTATGTGGGTTTTCCAAGTGGGGGTTAAAAACGTTGGC
AAATCGGGAAAGGGGTAATTATGAAGGGAAAACCAATAATGGGGGGGGAA
AATTTTTCACCCCGGGAAAAAGTGGAAAAAAAATATTTATAAAAAGCGGC
GCCCCCCCCCCCAAGGGCCGGGCC
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