DY304452

Overview
NameDY304452
Unique NameDY304452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1287
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304452 vs. ExPASy Swiss-Prot
Match: S38AB_DANRE (Putative sodium-coupled neutral amino acid transporter 11 OS=Danio rerio GN=slc38a11 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.097e-14
Identity = 72/274 (26.28%), Postives = 125/274 (45.62%), Query Frame = 2
Query:  134 QSQKHDNLEAHEAGIDGAS-FSGAVFNLSTTIVGAGIMALPATVMELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLN--GVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYTSALSVGLXXXXXXXXXXXXXXXXXDGSISMPRLLPEI--SNQA---SFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIRSIVRTSITLCSTVYIN 931
            +S++   L +H+AG  G+S  S A FN   +I+G+GI+ LP ++ + GL  GL++++LV ++T+ SI +++R    S + +Y  +V   FG  G  ++ V   +     ++ Y II GD L+  ++   GV    +  E   +H+                     +R +  L   S LS+ L                    +    L P+I  S+ A   + W       V+  A ICHHN   I   L++PT  R  + T I++ S+V ++
Sbjct:    2 ESERSCLLSSHDAGKGGSSSVSSASFNFINSIIGSGIIGLPYSMSQAGLPMGLLLLILVAFITDYSIILLVRGGNLSGTHSYQSLVRSTFGQIGYIIVSVLQFLYPFIAMISYNIIAGDTLTKVFMRIPGVGPGNILTE---RHF------VIAMSTVLFTLPLSLYRDIAKLGKVSLLSMILTFGILMTVV-----------VRAATLGPQIPASDDAWVFARWNAIQAVAVMSFALICHHNSFMIYGSLQEPTLSRWSLVTHISVGSSVLVS 255          
BLAST of DY304452 vs. ExPASy Swiss-Prot
Match: AVT6_YEAST (Vacuolar amino acid transporter 6 OS=Saccharomyces cerevisiae GN=AVT6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.240e-11
Identity = 66/257 (25.68%), Postives = 103/257 (40.08%), Query Frame = 2
Query:  185 ASFSGAVFNLSTTIVGAGIMALPATVMELGLIPGLIMIVLVGWLTESSIDMIMRFSR--ASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYTSALSVGLXXXXXXXXXXXXXXXXXD-----GSISMPRLLPEISNQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP--TQIRSIVRTSITLCSTVYI 928
            AS    V  L  T  GAGI+A+P      GLIPG+IMIVL G     S+ +  R ++      A++S +        G  +  + I +   G+ V YMI++GD++            +   W    W                      ++++SLRY S +++                   +     G IS   LLP  S+  +   +  T P+ V AY CHHN+  I NE +      +  I   +I+L   +YI
Sbjct:    3 ASIRSGVLTLLHTACGAGILAMPYAFKPFGLIPGVIMIVLCGACAMQSLFIQARVAKYVPQGRASFSALTRLINPNLG-IVFDLAIAIKCFGVGVSYMIVVGDLM----------PQIMSVWTRNAWLLNRNVQISLIMLFFVAPLSFLKKLNSLRYASMVAISSVAYLCVLVLLHYVAPSDEILRLKGRISY--LLPPQSHDLN---VLNTLPIFVFAYTCHHNMFSIINEQRSSRFEHVMKIPLIAISLALILYI 243          
The following BLAST results are available for this feature:
BLAST of DY304452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
S38AB_DANRE4.097e-1426.28Putative sodium-coupled neutral amino acid transpo... [more]
AVT6_YEAST4.240e-1125.68Vacuolar amino acid transporter 6 OS=Saccharomyces... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YL22RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304452 ID=DY304452; Name=DY304452; organism=Citrus clementina; type=EST; length=1287bp
AATTTTGGAATTTAGACCACGGCTTCGTTTCAACTTTCAACTTCAAGGGT
CAAACTCTTGTAAAATGACGATTCAGTCCTCAGTGGAGCGGAAGTATCGA
AAGAGTCCTAGAGCCCCTCTCCTCCCGCAAGCACAATCGCAAAAGCACGA
TAATTTGGAGGCTCACGAGGCTGGCATTGATGGCGCGTCGTTCTCAGGCG
CCGTCTTTAATTTATCAACTACAATTGTTGGAGCCGGAATCATGGCATTA
CCGGCGACGGTGATGGAATTGGGATTGATTCCTGGTCTAATTATGATCGT
ATTGGTTGGTTGGCTAACGGAATCTTCGATAGACATGATAATGAGATTCA
GTCGAGCTTCCAAGTCGGCCACTTACTCCGGTGTCGTCGCCGACGCTTTT
GGTGGGGCCGGTAGGGCCTTATTGCAGGTCTGCATTGTTGTCAACAACTT
GGGCATGCTCGTCGTTTACATGATTATCATCGGTGACGTGTTATCGGGGG
CGTGGTTGAACGGGGTCCACCATTCTGGTGTGACCGAAGAATGGTTTGGT
CAACATTGGTGGACCACGCGCTTTACATTGCTTCTCCTCACCACGCTCTT
CGTCTTCCTTCCTCTCATTTCATTCAGGCGCGTTGATTCATTGAGGTACA
CATCGGCATTGTCAGTCGGTTTGGCCATTGTATTCGTGGTGATAACAGCG
GGAGTTGCTGTTGTGAAAACAATTGATGGAAGCATTTCCATGCCGCGTCT
GTTGCCTGAAATTTCCAACCAGGCATCTTTTTGGAAACTTTTCACCACTT
TCCCAGTTCTAGTCACTGCTTATATCTGCCACCACAATATTCACCCTATA
GAGAATGAACTGAAAGACCCTACCCAGATAAGGTCGATTGTTCGGACATC
CATCACATTGTGTTCAACTGTCTACATTAACAACAGCTTCTTTGGATTCT
TACTCTTTGGGGGATCGCCCTTTGGGATGATGTACTTGCCAATTTTTGAT
GGGGAACCTTGGAATTCCATATAACCTCAATGGCTTGGAGGAGGGGGGTT
AAAGTTTAACTTTGGGAACCCACTTGGATGGCTTGGTTTTCCCCAATTTG
GGTTTTTTTCCCCCCTTCGGGCCCCCCCCCAAAATGGGGCCTCCCTTTTT
TCCCCCTTGGGCCCTTTCCCCTTTGGGCTTTTTGAACAACCCCCGGGAAA
ATTTTTTTTTGGGGGGGGGCCGCGGGCCCCCCCCTCCGGAAAGGGGGGGA
AATTTTTTATTTCTCTTTTGTGTTTGTGGAGGGAGAC
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