DY304455

Overview
NameDY304455
Unique NameDY304455
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1286
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304455 vs. ExPASy Swiss-Prot
Match: VPS53_MOUSE (Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.060e-46
Identity = 107/316 (33.86%), Postives = 186/316 (58.86%), Query Frame = 2
Query:   11 CTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR-----GGTGIVAAATGMDGQ--IRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQT--SNAASYTKFVSREMSKAEALLKVILSPVDSV---ADTYRALLPEGTPMEFQRILELRGLKKADHQTILDDFNKHVPGTTPP 913
            C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+     GG  I +     +G    R +  +  +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+   D  +  M+++PW ++E VGDQS YV  + + +  ++P++   L+    YF  F  K A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q      ASYTK V + M++AE +LKV+++P + +    D Y  LL +     FQ+IL+++GLK+++  ++L+   + +P   PP
Sbjct:  485 CSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTSSSSGGLTISSLLKEKEGSEVARFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALIAMSKMPWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVVKGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNSETFQKILDMKGLKRSEQSSMLELLRQRLP--APP 798          
BLAST of DY304455 vs. ExPASy Swiss-Prot
Match: VPS53_CHICK (Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.437e-45
Identity = 105/316 (33.23%), Postives = 187/316 (59.18%), Query Frame = 2
Query:   11 CTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR-----GGTGIVAAATGMDGQ--IRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQT--SNAASYTKFVSREMSKAEALLKVILSPVDS---VADTYRALLPEGTPMEFQRILELRGLKKADHQTILDDFNKHVPGTTPP 913
            C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+     GG  I +     +G    + +  +  +IC I+++AEYC  T+  L E + + +D+ L + ++++   D FS VI+ ++  LV  L+   D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q      ASYT+ V + M++AE +LKV+++P +      D Y  LL + +   FQ+IL+++GLK+++  ++L+ F + +P   PP
Sbjct:  484 CSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTSSSGGLTITSLLKEKEGSEVAKFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDASLVERINLTGETDTFSIVISNSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKFINHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTRIVVKGMTRAEMILKVVMAPHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKRSEQSSMLELFRQRLP--APP 797          
BLAST of DY304455 vs. ExPASy Swiss-Prot
Match: YNP8_CAEEL (Uncharacterized protein T05G5.8 OS=Caenorhabditis elegans GN=T05G5.8 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 1.037e-33
Identity = 89/285 (31.23%), Postives = 159/285 (55.79%), Query Frame = 2
Query:   71 LKAYATK-LFARLPRGGTGIVAAATGMD------GQIRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGR--QTSNAASYTKFVSREMSKAEALLKVI---LSPVDSVADTYRALLPEGTPMEFQRILELRGLKKADHQTILDDF 883
            L+ YAT  L A LP  G+    AA             R++   + ++C I+ +A++C +TS  L E +S+ I      GVD+S+  + F ++  ++L  LV  +E+  D  +  +++V W +++ VGD+S ++  +   L  ++P++  +LS    YF  F  KLA+ L  +F  ++F+C+ IS  GA+Q+LL+T ++KT LL +PS+     +    +Y   V+  ++KAE +LKV+   L  VD   + Y  LLP     E Q++LE++G+K+ +H  +L+ +
Sbjct:  446 LRGYATSCLVAFLPSLGSQQSGAANLFSLIREEIAYPRLTPDQQFLVCCILATADWCAETSIQLQEKLSQRIP-----GVDISQETEAFYSITNQSLQVLVQDVESTCDAALQSISKVNWTAVDCVGDESPFIGSMRAHLRQAVPLIRDMLSDRRKYFAHFCLKLATQLAHKFVGSLFRCRTISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYVTSVNAALTKAEMILKVVMCSLETVDEFVEQYIKLLPASDAAEMQKVLEMKGVKRQEHSAVLNAY 725          
BLAST of DY304455 vs. ExPASy Swiss-Prot
Match: VPS53_PONAB (Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.704e-24
Identity = 65/212 (30.66%), Postives = 118/212 (55.66%), Query Frame = 2
Query:   11 CTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR-----GGTGIVAAATGMDGQ--IRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQM 616
            C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+     GG  I +     +G    + +  +  +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+   D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K A+S  P+F  ++FKCK IS  GA+Q+
Sbjct:  485 CSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKEGSEVAKFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKFITHLFKCKPISMVGAEQV 696          
BLAST of DY304455 vs. ExPASy Swiss-Prot
Match: VPS53_HUMAN (Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.704e-24
Identity = 65/212 (30.66%), Postives = 118/212 (55.66%), Query Frame = 2
Query:   11 CTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR-----GGTGIVAAATGMDGQ--IRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQM 616
            C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+     GG  I +     +G    + +  +  +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+   D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K A+S  P+F  ++FKCK IS  GA+Q+
Sbjct:  485 CSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKEGSEVAKFTLEELCLICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCVKFANSFIPKFITHLFKCKPISMVGAEQV 696          
BLAST of DY304455 vs. ExPASy Swiss-Prot
Match: YDLF_SCHPO (Uncharacterized protein C3A12.15 OS=Schizosaccharomyces pombe GN=SPAC3A12.15 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.007e-20
Identity = 87/309 (28.16%), Postives = 149/309 (48.22%), Query Frame = 2
Query:   29 SQTLLNLFKVFQRILKAYATKLFARLPR-----GGTGIVAAATGMDGQIRISERDE----RVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDN----EMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLS-PIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVA---DTYRALLPEGTPMEFQRILELRGLKKADHQTILDDFNKHVPGT 904
            SQ L +  K+FQ   K      F RL R     G   +         Q+ + +  E    + I   +N+AEY ++T+ +L +   +I + +  D +  SEV +    VI+ +  TL+     KF+N    ++  ++++   ++E+VGDQS YV G    +T+      S++   ++ + F D+   S   +F   I+  K ISE GA+Q+LLD  + K  LL +P L +  S   SY   ++  M   E +LK +L+P    A    +Y  L+ + +   F  +LEL+G+ K+D  + L  F+  V  T
Sbjct:  400 SQVLSSSIKLFQAYRKTLTQ--FVRLTRSSPLVGLKNLFIKWLRRYTQVELLDYQESSTFKDIAIRLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLE----VISSSRGTLLKFATGKFENVLNSDLEPLSKMDLKNIETVGDQSSYVGGAVQNMTAKASEFLSVVDLNMFARNFCDRSCESFTRQFLNAIYLAKPISEVGAEQLLLDLYSFKNALLKLPDLKQDYSITDSYINHLTIFMGYIETVLKTLLTPASPKAGFIQSYIFLVKDRSVTNFTVLLELKGVGKSDISSFLQQFSDFVKKT 702          
The following BLAST results are available for this feature:
BLAST of DY304455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS53_MOUSE4.060e-4633.86Vacuolar protein sorting-associated protein 53 hom... [more]
VPS53_CHICK3.437e-4533.23Vacuolar protein sorting-associated protein 53 hom... [more]
YNP8_CAEEL1.037e-3331.23Uncharacterized protein T05G5.8 OS=Caenorhabditis ... [more]
VPS53_PONAB5.704e-2430.66Vacuolar protein sorting-associated protein 53 hom... [more]
VPS53_HUMAN5.704e-2430.66Vacuolar protein sorting-associated protein 53 hom... [more]
YDLF_SCHPO1.007e-2028.16Uncharacterized protein C3A12.15 OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YM02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304455 ID=DY304455; Name=DY304455; organism=Citrus clementina; type=EST; length=1286bp
CTTAAAGTGATGCACTGCTTTAACGAAGAGCCAGACATTATTAAATTTGT
TCAAGGTATTTCAAAGAATTCTAAAAGCATATGCAACAAAGCTTTTTGCA
AGACTACCAAGAGGTGGTACAGGGATTGTTGCAGCAGCTACTGGTATGGA
TGGACAGATAAGGATATCTGAGAGGGACGAAAGGGTTATCTGTTATATTG
TGAATTCAGCTGAATACTGCCACAAAACGTCTGGAGATCTGGCTGAAAGT
GTGTCCAAAATAATTGATTCTCAGTTAGCAGATGGAGTGGATATGTCTGA
AGTGCAGGACGAATTTTCAGCAGTGATAACGAAAGCATTGGTAACCTTGG
TTCTTGGCCTGGAAACTAAGTTCGATAATGAAATGGCTGGAATGACCCGT
GTTCCATGGGGTAGCCTAGAAAGTGTGGGTGACCAATCAGAGTATGTCAA
TGGAATAAATATGATCCTTACTAGTAGCATTCCTGTACTTGGAAGCCTTC
TTTCACCCATCTACTTTCAGTTCTTCTTGGATAAGCTCGCATCATCCCTT
GGCCCACGATTTTATGCCAATATTTTCAAGTGCAAGCACATATCAGAAAC
TGGAGCCCAACAGATGTTGTTAGACACGCAAGCCGTAAAAACTATTCTTC
TAGACATACCGTCCCTCGGTCGACAGACGTCAAATGCTGCTAGCTATACA
AAATTTGTAAGCCGCGAGATGAGCAAAGCTGAAGCACTTCTGAAGGTCAT
ACTATCCCCGGTTGATTCTGTGGCAGACACATATCGTGCATTGCTACCCG
AGGGAACCCCTATGGAATTCCAGCGTATCCTAGAGCTTAGGGGCCTTAAA
AAAGCTGATCACCAGACTATTCTTGATGACTTCAACAAACATGTCCCGGG
GACTACCCCACCCTAATATTGCACCATCCGGTGGGGCTGCCAGCCCCTCC
TGCTCCCCATCTTCAGTGAATCCCAAATTCCGCCTCCCCCGGGTTTAACC
CCTTTCCCGGAAAAAGTTATAACCCCGAACCACCTGCCCTTGGAACAAAG
GGGCGCCCACACATGGGAATTCAAAAAGTTCCCCGGCTTTTAAACCCAGG
CCGCCAAAAAAACCCGGGAAAAAAGGGGCCTTTTCCCAAAAAGTTTTTTT
CCCCCCCAAAAACTTTTCTCCCCAAAAAAAATTCCCCTTTTTAAAAAAAA
ATTTTATTATTTTCAAAAACCCCCCCCCTCCTCCTTTCTTTCCTCCCCCC
GCCGCGCCCCCCCCACACCCCCCCCCCCCCCCCCCC
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