DY304456

Overview
NameDY304456
Unique NameDY304456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1281
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GATA6_ARATH (GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.121e-25
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  841 RNPQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTFCSVIAPPTPQKGIREMKNK 1017
            + PQWREGP GPKTLCNACGVR++ GR  PEY PA SPTF   +   + +K I EM+ K
Sbjct:  229 KTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRK-IIEMRRK 286          

HSP 2 Score: 64.3142 bits (155), Expect = 1.121e-25
Identity = 66/232 (28.45%), Postives = 96/232 (41.38%), Query Frame = 2
Query:  230 EFFDDVVD----TLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHRPQVKQ------------KPXXXXXXXXXXXYVCNKSNDGKYLLLSQTSSPISVLESG-GSCSAEKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSEDYHPETASESGSEMNL---TEXXXXXXXXXXXNLTVLSGSRENKKLSFQQTDAPRKCMHCEVAETHNGGKG 865
            +FFDD+++     L+D++  N G  DW   F+ LEPPP     FP +P S+  SC     K             K            +  +   + K   L Q+ SP+SVLE+  GS S   H   + +L F VK  RSKR+RP TL   +++P     SE   PE ++    E      +E               +S + E    +       RKC HCE  +T    +G
Sbjct:   20 DFFDDLINHLDVPLDDIDTTN-GEGDWVDRFQDLEPPPMDM--FPTLP-SDLTSCGSGMAKAPRVDIQRNIPALKQSYSSEALSSTLHQSSAPPEIKVSKLFQSLSPVSVLENSYGSLST--HNNGSQRLAFPVKGMRSKRKRPTTLRLSYLFP-----SEPRKPEKSTPGKPESECYFSSEQHAKKKRKIHLTTRTVSSTLE----ASNSDGIVRKCTHCETTKTPQWREG 236          
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GATA5_ARATH (GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.898e-25
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  847 PQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTFCSVIAPPTPQKGIREMKNK 1017
            PQWR+GP GPKTLCNACGVR+K GR  PEY PA SPTF   +   + +K I EM+ K
Sbjct:  229 PQWRQGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRK-IIEMRKK 284          

HSP 2 Score: 65.0846 bits (157), Expect = 1.898e-25
Identity = 64/230 (27.83%), Postives = 98/230 (42.61%), Query Frame = 2
Query:  230 EFFDDVVD----TLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHR------------PQVKQK-PXXXXXXXXXXXYVCNKSNDGKYLLLSQTSSPISVLESG-GSCSAEKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSEDYHPETASESGSEMNLTEXXXXXXXXXXXNLTVLSGSRENKKLSFQQTDAPRKCMHCEVAETHNGGKG 865
            +FFD + +     LED+++ N G  DW A F+ LEPPP     FP +P S+  SC +            P +KQ              +  +   D K   L Q+ +P+SVLE+  GS S +     + +L F VK  RSKRRRP T+   +++PF    S      T     SE +  +            + +++ +  +   S +     R C HCE   T    +G
Sbjct:   20 DFFDGLTNHLDCPLEDIDSTN-GEGDWVARFQDLEPPPLDM--FPALP-SDLTSCPKGAARVRIPNNMIPALKQSCSSEALSGINSTPHQSSAPPDIKVSYLFQSLTPVSVLENSYGSLSTQNSG--SQRLAFPVKGMRSKRRRPTTVRLSYLFPFEPRKSTPGESVTEGYYSSEQHAKK---------KRKIHLITHTESSTLESSKSDGIVRICTHCETITTPQWRQG 234          
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GATA7_ARATH (Putative GATA transcription factor 7 OS=Arabidopsis thaliana GN=At2g28340 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 8.668e-22
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  847 PQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTFCSVI 972
            PQWREGP G KTLCNACG+R++ GR   EY PA SPTF   +
Sbjct:  226 PQWREGPNGRKTLCNACGIRFRSGRLVLEYRPAASPTFIPTV 267          

HSP 2 Score: 62.3882 bits (150), Expect = 8.668e-22
Identity = 66/261 (25.29%), Postives = 101/261 (38.70%), Query Frame = 2
Query:  194 MNDDNWI----FSHL-DEFFDDVVDTLEDLEACNI--GVD--DWNANFEALEPPPFGWTDFPVVPTSNHISCHRPQVK-QKPXXXXXXXXXXXY---------------------------VCNKSNDGKYLLLSQTSSPISVLESGGSCSAEKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSEDYHPETASESGSEMNLTEXXXXXXXXXXXNLTVLSGSRENKKLSFQQTDAPRKCMHCEVAETHNGGKG 865
            MN+D W+    F  L D F D++VD   D+   +I  G D  DW+A F+ L PPP       ++  S   +C+  +V+ QK            Y                           V N   + K   L Q+ SP+SVL++     + ++   + KL F VK  RSKR+RP  L   F+  F+   S+ + P+ +  S                    ++ L   ++NK           KC HCE   T    +G
Sbjct:    1 MNNDLWLPEEDFKGLPDNFLDNLVDPTNDVSVEDIETGDDEGDWDAKFQKLVPPPLD----ELMSLSYEFTCNGQRVQVQKHVPILLVILSQMYMDLNGFQFGNWDVVIEKQSSSSEVFSTVDNSPPNVKVSKLLQSLSPVSVLKNTNGSGSPQNPNGDQKLAFLVKGIRSKRKRPTLLRVTFLKSFLLEMSQQFAPDESESS-------------------EISALKKRKKNKSRRL-------KCTHCETTTTPQWREG 231          
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GAT10_ARATH (GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.536e-16
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  841 RNPQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTFCSVIAPPTPQKGIREMKNK 1017
            + PQWR GPMGPKTLCNACGVRYK GR  PEY PA SPTF   +   + +K + EM+NK
Sbjct:  238 KTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK-VAEMRNK 295          

HSP 2 Score: 29.261 bits (64), Expect = 1.536e-16
Identity = 35/127 (27.56%), Postives = 49/127 (38.58%), Query Frame = 2
Query:  488 QTSSPISVLESGGSCSAEKHVPINPKLVFAVK--RARSKRRRPATLNPLFIYPFISSTSEDYHPETASESGSEMNLTEXXXXXXXXXXXNLTVLSGS----RENKKLSFQQTDAP-RKCMHCEVAET 847
            ++SSP+SVLES  S S   +      LV   K  R R+KR RP   +   +   +             +  S+ N              + +  SG       N   S+     P RKCMHCEV +T
Sbjct:  116 RSSSPVSVLESSSSSSQTTNTT---SLVLPGKHGRPRTKRPRPPVQDKDRVKDNVCGGDSRLIIRIPKQFLSDHNKMINKKKKKKAKITSSSSSSGIDLEVNGNNVDSYSSEQYPLRKCMHCEVTKT 239          
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GAT14_ARATH (GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.685e-13
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  841 RNPQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTFCSVIAPPTPQKGIREMKNK 1017
            + PQWR GPMG KTLCNACGVRYK GR  PEY PA SPTF S +     +K I EM+ K
Sbjct:  258 KTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVI-EMRRK 315          

HSP 2 Score: 23.483 bits (49), Expect = 6.685e-13
Identity = 9/17 (52.94%), Postives = 10/17 (58.82%), Query Frame = 2
Query:  797 QQTDAPRKCMHCEVAET 847
            QQ    RKC HC V +T
Sbjct:  243 QQLQPQRKCSHCGVQKT 259          
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GAT13_ARATH (GATA transcription factor 13 OS=Arabidopsis thaliana GN=At5g25830 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.314e-12
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query:  841 RNPQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTF 960
            + PQWR GPMGPKTLCNACGVRYK GR  PEY PA SPTF
Sbjct:  228 KTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTF 267          
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GAT11_ARATH (GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.314e-12
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query:  841 RNPQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTF 960
            + PQWR GPMGPKTLCNACGVRYK GR  PEY PA SPTF
Sbjct:  206 KTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTF 245          
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.716e-12
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 1
Query:  799 ANRCT*EMHAL*GGRNPQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTF 960
            A RCT   H     + PQWR GP+GPKTLCNACGVRYK GR  PEY PA SPTF
Sbjct:  157 ARRCT---HCA-SEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTF 206          
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.823e-12
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  841 RNPQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTFCSVIAPPTPQKGIREMKNK 1017
            + PQWR GP GPKTLCNACGVRYK GR  PEY PA SPTF + +   + +K I EM+ +
Sbjct:  203 KTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRK-IVEMRKQ 260          
BLAST of DY304456 vs. ExPASy Swiss-Prot
Match: GATA3_ARATH (GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.993e-12
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  847 PQWREGPMGPKTLCNACGVRYKVGRPGPEYPPAGSPTFCSVIAPPTPQKGIREMKNK 1017
            PQWR GP+GPKTLCNACGVR+K GR  PEY PA SPTF + I     +K +   K+K
Sbjct:  191 PQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSK 247          
The following BLAST results are available for this feature:
BLAST of DY304456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GATA6_ARATH1.121e-2559.32GATA transcription factor 6 OS=Arabidopsis thalian... [more]
GATA5_ARATH1.898e-2561.40GATA transcription factor 5 OS=Arabidopsis thalian... [more]
GATA7_ARATH8.668e-2264.29Putative GATA transcription factor 7 OS=Arabidopsi... [more]
GAT10_ARATH1.536e-1662.71GATA transcription factor 10 OS=Arabidopsis thalia... [more]
GAT14_ARATH6.685e-1362.71GATA transcription factor 14 OS=Arabidopsis thalia... [more]
GAT13_ARATH1.314e-1280.00GATA transcription factor 13 OS=Arabidopsis thalia... [more]
GAT11_ARATH1.314e-1280.00GATA transcription factor 11 OS=Arabidopsis thalia... [more]
GATA4_ARATH1.716e-1266.67GATA transcription factor 4 OS=Arabidopsis thalian... [more]
GATA1_ARATH3.823e-1259.32GATA transcription factor 1 OS=Arabidopsis thalian... [more]
GATA3_ARATH4.993e-1259.65GATA transcription factor 3 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YM03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304456 ID=DY304456; Name=DY304456; organism=Citrus clementina; type=EST; length=1281bp
CGGAACAAAACATAATCCCCGAAATCCCCAAAACCACAACACACAGATTC
AAAAAGGAATCTCATCTTCACCCACAGGCACAGCCTTTTCTAAATGTCGG
TGAAAATTTAAACACCACATTTCTAAGATCACTTATTTTTTCTCATTTCT
TCTCCTTACTCTTCATATGTTGATGAAAGATTGAAGAATTAACATGAATG
ATGATAACTGGATTTTCTCCCATTTGGATGAGTTCTTTGATGATGTTGTG
GATACATTGGAGGACTTGGAAGCATGTAATATAGGAGTAGATGATTGGAA
TGCTAACTTTGAAGCCCTTGAGCCACCACCATTTGGTTGGACGGATTTTC
CGGTGGTGCCGACAAGTAACCATATCTCTTGTCACAGACCTCAAGTGAAA
CAGAAGCCGAGCTCTACTGATACATCCTCCAGTCGAAGCAGTTATGTCTG
CAACAAATCTAATGATGGCAAATATTTACTGCTGTCGCAGACCTCCAGTC
CAATATCTGTCCTCGAAAGTGGTGGCTCCTGCTCAGCTGAAAAACACGTA
CCCATTAATCCTAAACTTGTATTTGCAGTGAAGCGCGCTCGAAGCAAGCG
TCGACGACCTGCAACTTTGAACCCACTTTTCATTTACCCTTTCATATCCT
CCACTTCTGAGGATTATCATCCTGAAACTGCTTCTGAATCTGGGTCGGAG
ATGAATCTCACTGAGAAGCCTGTTAGGAAGAAGCAAAAGAGGAAAAAGAA
CCTGACGGTGCTCTCAGGTTCCAGGGAGAATAAGAAATTATCCTTTCAGC
AAACAGATGCACCTAGGAAATGCATGCATTGTGAGGTGGCAGAAACCCAC
AATGGAGGGAAGGGCCTATGGGACCAAAGACCCTTTGTAATGCGTGTGGA
GTCCGCTACAAGGTCGGTCGGCCTGGTCCGGAGTACCCACCTGCTGGCAG
TCCTACTTTTTGTTCCGTCATTGCCCCTCCCACTCCCCAAAAAGGGATAA
GGGAAATGAAAAACAAAGGTAAGGTTGTAAAACCCTCAACTTGGCTGCAG
TCCCAACCTTTTTACTCAGAAACTACCGCCGAAAAGGGTTATGGGTAAGA
AACCGCCCACAGGGGGGTATAAACAAAACACAATTTTTTAAAGAAACAAT
GGTTATCCCCCAGGGCCCCTTATTAGAAAAATTTTCTTTTGGGGGAACCC
TTTTTTTTTGTTTTAAATTTATTTTTTTAAAGAAAAAAAACCACGGGCCC
CCCTTCTCTCCCCAAATATGTTGGGGAAAGA
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