DY304458

Overview
NameDY304458
Unique NameDY304458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1251
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.169e-55
Identity = 121/238 (50.84%), Postives = 148/238 (62.18%), Query Frame = 1
Query:  160 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEDNLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDE-MXXXXXXXXXXXXXXXXXXXXNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFGYEEES 870
            M DW  L QS+++GL+FSYL+AKLIS+V++FKEDNLS+TR    +  E K    D      + R   +  G   + +S++AEQGS R++                    STELDE                      +DVQ QLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM+KYI+IVT+LYPTW  G      RG +DAAS +S+  MGPVFSS  Y+EES
Sbjct:    1 MGDWAQLAQSVILGLIFSYLLAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVD------SRRLDSSCGGFGGEADSLVAEQGSSRSDS---VAGDDSEEDDDWEGVESTELDEAFSAATLFVTTAAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGDDAAS-NSRGTMGPVFSSLVYDEES 228          

HSP 2 Score: 27.7202 bits (60), Expect = 4.169e-55
Identity = 13/29 (44.83%), Postives = 22/29 (75.86%), Query Frame = 2
Query:  875 NDLKMDAIHAFARKRKHE*SALNVLKNGV 961
            N+LK+DAIH FAR+ + E + L  +++G+
Sbjct:  230 NELKIDAIHGFAREGEVE-NLLKSIESGI 257          
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.753e-54
Identity = 133/282 (47.16%), Postives = 165/282 (58.51%), Query Frame = 1
Query:  160 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEDNLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDE-MXXXXXXXXXXXXXXXXXXXXNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFGYEEESGK*FENGCYPCLCQKKET*IICLKCIEKWCFPVNFEKKLRGRAP 1002
            M+DW  L QSI+ GL+F+YL+AKLIS++L+FK++NLS+TR N+   +E +           N R  E  +G   +T+S+IAEQGS+R +E                   STELDE                      N++QLQLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM+KYID+VT+LYP W  G S +  R  E A       PMGPVFSS  YEEES    +        ++ E   + LKCIE    PVN  +   GR P
Sbjct:    1 MADWYQLAQSIIFGLIFAYLLAKLISILLAFKDENLSLTR-NHTTQSEYE-----------NLRKVETLTGISGETDSLIAEQGSLRGDED-------ESDDDDWEGVESTELDEAFSAATAFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAWVEGGSKRRNRSGEAA------GPMGPVFSSLVYEEESDNELKIDAIHAFAREGEVENL-LKCIENG-IPVN-ARDSEGRTP 254          
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: PECI_MOUSE (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus musculus GN=Peci PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 7.961e-15
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  568 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAA 807
            N+V+L+LYALYK ATEGPC+ P+P  L    +AKW AW  LG++P E A Q Y+D+V+ L  +  A S  + KRG ++ A
Sbjct:   57 NEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEAPS--QGKRGADEKA 134          
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: PECI_HUMAN (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo sapiens GN=PECI PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 1.358e-14
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  568 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLK 780
            N+V+L+LYALYK ATEGPC+ P+P    +  +AKW AW  LG++P E A Q Y+D+V+ L P+  + S ++
Sbjct:   59 NEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVE 129          
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: PECI_RAT (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattus norvegicus GN=Peci PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.025e-14
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  568 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSK 822
            N+V+L+LYALYK ATEGPC+ P+P       +AKW AW  LG++P E A Q Y+D+V+ L  +  A S  K   G  D  + +SK
Sbjct:   57 NEVKLRLYALYKQATEGPCTMPKPGVFDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEASSQGK---GGADGKAQESK 138          
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: ACBP3_ARATH (Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.308e-12
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  571 DVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYP 753
            + +++L+ L+KIATEG C   QP A+ ++ARAKW AWQKLG M  EEAM++Y+ +V++  P
Sbjct:  254 EAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSKEIP 314          
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.835e-11
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 1
Query:  568 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSS 774
            +D  L LYALY+ AT GPC+ P+PSA +   ++KW++WQ LG MP  EAM+ ++ I+ E  P W + +S
Sbjct:   41 DDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMRLFVKILEEDDPGWYSRAS 109          
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.089e-11
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  568 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTW 759
            ND  L LY L++ AT GPCS P+PSA     ++KW++WQ LG MP  EAM+ ++ I+ E  P W
Sbjct:   42 NDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQSKWKSWQGLGTMPSIEAMRLFVKILEEADPGW 105          
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: ACBD6_HUMAN (Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens GN=ACBD6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.109e-11
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  580 LQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFGYEE 864
            L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +V +L P W     +  K+G+E  A+T      GPV SS  +EE
Sbjct:   66 LYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGW--NPQIPEKKGKE--ANTGFG---GPVISSLYHEE 153          
BLAST of DY304458 vs. ExPASy Swiss-Prot
Match: ACBD6_BOVIN (Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.109e-11
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  580 LQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFGYEE 864
            L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +V +L P+W   S    K+G+E  A+T      GPV SS  +EE
Sbjct:   66 LYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPSWNPQS--PEKKGKE--ANTGFG---GPVVSSLYHEE 153          
The following BLAST results are available for this feature:
BLAST of DY304458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ACBP2_ARATH4.169e-5550.84Acyl-CoA-binding domain-containing protein 2 OS=Ar... [more]
ACBP1_ARATH1.753e-5447.16Acyl-CoA-binding domain-containing protein 1 OS=Ar... [more]
PECI_MOUSE7.961e-1548.75Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus m... [more]
PECI_HUMAN1.358e-1447.89Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo ... [more]
PECI_RAT3.025e-1445.88Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattu... [more]
ACBP3_ARATH6.308e-1250.82Acyl-CoA-binding domain-containing protein 3 OS=Ar... [more]
ACBP4_ARATH1.835e-1146.38Acyl-CoA-binding domain-containing protein 4 OS=Ar... [more]
ACBP5_ARATH4.089e-1148.44Acyl-CoA-binding domain-containing protein 5 OS=Ar... [more]
ACBD6_HUMAN9.109e-1141.05Acyl-CoA-binding domain-containing protein 6 OS=Ho... [more]
ACBD6_BOVIN9.109e-1142.11Acyl-CoA-binding domain-containing protein 6 OS=Bo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YM05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304458 ID=DY304458; Name=DY304458; organism=Citrus clementina; type=EST; length=1251bp
CTGTCCCCAACCTTTTCAAGTGTCTCTTTCTTTTCACGATCTCACAAATC
AACCTCGGAAGCATCAATTTGCACCCAAGTTCAAAGGTTTTAGCCTTGTC
TTCCATCCAAAATTTGTCTCATTTTCTAGGGTTAGGGTTTTCTTTCAGTT
ACAAAAGCCATGAGTGATTGGCAGCCTCTTCTGCAATCAATACTCATAGG
CTTACTCTTCTCTTATCTTGTGGCTAAGTTAATCTCTGTGGTCCTTTCTT
TCAAAGAAGATAATCTCTCTATCACTCGCAGTAACAATAACAACTACAAT
GAACCAAAGCGGACTAAAGACGACGTAGTCGTCGCCGCCCCGAATCCGCG
CGGCCCGGAGGCGGATTCGGGTCGGCCTCACGATACGGAGTCGATGATCG
CGGAGCAAGGAAGCGTGAGGAACGAAGAGAGCTTGCCTTGCAGTGATGTT
GACAGCGATGGTGACGATGATTGGGAGGGTGTCGAGTCTACGGAACTGGA
TGAGATGTTCAGTGCGGCCACGGCATTTGTGGCGGCCAGTGCTGCTGCCT
CGTCGAAGAAGGTGTCCAATGATGTGCAGTTGCAGCTCTATGCGTTGTAC
AAGATTGCCACTGAAGGTCCCTGTAGTGCTCCCCAGCCTTCTGCGTTGAA
AATGACCGCTCGGGCCAAGTGGCAAGCATGGCAGAAATTGGGTGCCATGC
CTCCAGAAGAAGCAATGCAGAAATACATTGATATTGTTACAGAGCTGTAT
CCTACTTGGGCTGCTGGTTCATCTTTGAAGAGCAAACGTGGACAAGAAGA
TGCGGCAAGCACAGATTCCAAAGCACCAATGGGTCCTGTTTTCAGCTCTT
TTGGCTATGAAGAGGAATCTGGGAAATGATTTGAAAATGGATGCTATCCA
TGCCTTTGCCAGAAAAAGGAAACATGAATAATCTGCCTTAAATGTATTGA
AAAATGGTGTTTTCCGGTTAATTTTGAAAAAAAATTGAGGGGTCGTGCCC
CCCATTGCATTGGGGCTGGGTAAATCGCCGGAAACCCTGAAACATCTCTG
AAACTTACTTTGGTTAACCAAAAAAATGCTTAAAGTTAAAACCCCCAAGG
GGAAAAAATGAAAGGGAACAAAACTCCCCTTTTTCTTTTAATGCCTGGTT
GTTATAGTGATAAGAAGGGAAAAACCCCTTTTGGCCCCCAATTTTTTTCT
TTGGGTGGAAAAAAACAAAAAAATGCGAAAAAAAATAATAAGGAGCGCCA
T
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