DY304473

Overview
NameDY304473
Unique NameDY304473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304473 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.054e-14
Identity = 71/206 (34.47%), Postives = 96/206 (46.60%), Query Frame = 2
Query:  731 SPEPKPEAKPAVTS---------ENESKDTK---------TEPEMG----PEEVYIWGIPLLADERSDVILLNFLGARNFKVKNAFPMLKKPFQWRKGIRHWRIGWAKIGVRNWTKGWFRQGFDKER----APRFSTMVDGGIF---KKQGTFFKKNVFFEQKEKKRQKNFPEGGAQILHFLRGKRGGPLRGEK-LWVYFFRGPRR 1258
            S + K E KPAV +         E E+K  +         T PE      PEEV IWGIPLL DERSDVILL FL AR+FKVK AF MLK   QWRK  +   +    +    + K  F  G DK+        +    +  IF   +K   F K  + F++K  +     PE  +  + F+   R  P  G++ LW +  R  ++
Sbjct:  298 SEKKKEEEKPAVVTIEKAFAADQEEETKTVEAVEESIVSITLPETAAYVEPEEVSIWGIPLLEDERSDVILLKFLRARDFKVKEAFTMLKNTVQWRKENKIDDLVSEDLEGSEFEKLVFTHGVDKQGHVVIYSSYGEFQNKEIFSDKEKLSKFLKWRIQFQEKCVRSLDFSPEAKSSFV-FVSDFRNAPGLGQRALWQFIKRAVKQ 502          
BLAST of DY304473 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 8.921e-14
Identity = 59/170 (34.71%), Postives = 79/170 (46.47%), Query Frame = 2
Query:  626 EVAEAAEDDGAKXXXXXXXXXXXXXXXXPQEQLPQSPEPKPEAKPAVTSENESKDTKTEPEMGPEEVYIWGIPLLADERSDVILLNFLGARNFKVKNAFPMLKKPFQWRKGIRHWRIGWAKIGVRNWTKGWFRQGFDKERAPRFSTMVDGGIFKKQGTFFKKNVFFEQKE 1135
            E A +AE+DG K                 +E +     P+    P V    E+        + PEEV IWG+PLL DERSDVIL  FL AR+FKVK A  MLK   QWRK  +   +  +   V  + K  F  G DKE       +V   I+   G F  K +F ++++
Sbjct:  191 EKASSAEEDGTKTVEAI------------EESIVSVSPPESAVAPVVV---ETVAVAEAEPVEPEEVSIWGVPLLQDERSDVILTKFLRARDFKVKEALTMLKNTVQWRKENKIDELVESGEEVSEFEKMVFAHGVDKE-----GHVV---IYSSYGEFQNKELFSDKEK 337          
BLAST of DY304473 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 9.863e-13
Identity = 53/155 (34.19%), Postives = 74/155 (47.74%), Query Frame = 2
Query:  815 PEEVYIWGIPLLADERSDVILLNFLGARNFKVKNAFPMLKKPFQWRKGIRHWRIGWAKIGVRNWTKGWFRQGFDKERAPRFSTMVDGGIFKKQGTFFKKNVF---FEQKEKK---------------RQKNFPEGGAQILHFLRGKRGGPLRGEK 1225
            PEEV IWGIPLL D+RSDV+LL FL AR FKVK++F MLK   +WRK  +   +    + V +  K  F  G D+E  P          +   G F  K ++   F  +EK+               R+ +F  GG   +  +   +  P  G+K
Sbjct:  147 PEEVKIWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKIDELVEEDL-VDDLDKVVFMHGHDREGHP--------VCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRKLDFSSGGVSTIFQVNDMKNSPGLGKK 292          

HSP 2 Score: 69.707 bits (169), Expect = 4.144e-11
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  167 QPAEKTAMPAVEKEA---PVTLPETDEASNKETETPKSSSGDDAESEQK--VPES-GSFKEESTRVGDLPDNEKKALDELKQVVQEALNKHEFS 430
            + A+ T  P  E  A   P T+ ET+ AS ++ E    +S  +   E+K  +P++ GSFKEES+++ DL ++EKK+LDELK +V+EAL+ H+F+
Sbjct:   51 ETADTTTKPEEETAAEHHPPTVTETETASTEKQEVKDEASQKEVAEEKKSMIPQNLGSFKEESSKLSDLSNSEKKSLDELKHLVREALDNHQFT 144          
The following BLAST results are available for this feature:
BLAST of DY304473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PATL2_ARATH1.054e-1434.47Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL1_ARATH8.921e-1434.71Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
PATL3_ARATH9.863e-1334.19Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YM22RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304473 ID=DY304473; Name=DY304473; organism=Citrus clementina; type=EST; length=1264bp
CACCATTTCTATTATTCTTTATTTATTTGGTTGGGCTCTTAATTAGATAT
AATTAATATCAGCAGCAGCAGCAGCAGCAGCAACTATGGCGGAGGAAGTT
CAAAAGACAGAGTCCCAAGAGACAGCTGCTCAAGTTGAAGAGGTGGTGGT
TCAAACTGATCATGTGCAGCCGGCTGAGAAGACTGCAATGCCGGCGGTAG
AGAAAGAGGCACCGGTGACATTGCCGGAGACTGATGAGGCTTCTAATAAA
GAGACTGAGACTCCGAAATCCAGCAGTGGTGACGATGCTGAGAGTGAGCA
GAAGGTGCCCGAGTCTGGTTCTTTTAAGGAAGAAAGCACTAGAGTGGGTG
ATCTTCCGGATAATGAGAAGAAAGCGCTAGACGAGCTTAAGCAGGTTGTT
CAAGAAGCGCTTAACAAGCATGAGTTTAGTGCTAAAACAACACCAACACC
AACACCAACACCAGCACCGGCAGCAACAAAAGAAGAAGAAAAGAAAGAGA
CTGAGGCTGTCGTGGCAGAGGAGGAGAAGAAGCCAGAGCAACCTTCGGAA
CCAACAAAGCCAGAACCAGAAATTGCTGCTCAAGAAGAAAAGGAAACTGA
GGTTATTGAAGAAAAGACAGCTCCAGAAGTTGCTGAAGCTGCAGAAGATG
ATGGTGCCAAAACTGTAGAGGCCATAGAAGAGACAGTTGTAGCCGTATCA
TCTTCTGTTCCACAAGAGCAATTGCCTCAATCTCCAGAGCCAAAGCCTGA
GGCAAAGCCTGCTGTCACTTCAGAAAATGAGTCAAAAGACACGAAGACTG
AACCCGAAATGGGGCCTGAAGAGGTTTACATATGGGGCATTCCTCTCCTG
GCTGATGAGAGAAGCGATGTCATTCTCTTGAATTTCCTCGGCGCCCGAAA
CTTCAAGGTCAAAAATGCATTTCCAATGCTCAAGAAACCATTTCAATGGA
GAAAAGGAATTCGGCATTGGAGGATTGGATGGGCCAAAATTGGGGTGAGA
AATTGGACAAAAGGGTGGTTCAGGCAGGGGTTTGACAAAGAAAGGGCCCC
CCGGTTTTCCACCATGGTGGACGGGGGAATTTTCAAAAAACAAGGAACCT
TTTTCAAAAAAAACGTTTTTTTTGAACAAAAAGAAAAAAAAAGGCAAAAA
AATTTCCCGGAGGGGGGGGCGCAAATTCTTCATTTCCTCCGGGGGAAAAG
AGGAGGCCCCCTCCGAGGAGAAAAATTGTGGGTGTATTTTTTTCGGGGGC
CCCGCCGCCGGGGG
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