DY304487

Overview
NameDY304487
Unique NameDY304487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304487 vs. ExPASy Swiss-Prot
Match: CTU2_ARATH (Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabidopsis thaliana GN=CTU2 PE=2 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 4.355e-93
Identity = 172/285 (60.35%), Postives = 215/285 (75.44%), Query Frame = 1
Query:   88 MACNSATGCQSGCYKNEFERDLKPATETISDS-NEQNLCVKCKANEPTP---GAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDXXXXXXXXXXQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSFTADIQYADARWEIPVVLPLRDCLAPELHMPCQLD 930
            MACNS+ GC+SGCY  E +   K   + +S   N +++CVKCK N P     G  +DG+ C DCFR+N+FGKFRLAV S+A+ITP+DNVLVAFSGG SSRV+LQFVHELQ +A KN++AS+DRSLPVFGVGV FVDETA +P  S+E+ +AI+ ++  VS LSPP K+LHV+P+ESIF S+  D R+   KL+DSV D TGKED          QK A+ENGYNRL+LG CTSRIA HV+TATVKGRGYS +ADIQ+ DARW++P+VLPLRDC+  E+   C LD
Sbjct:    1 MACNSS-GCESGCYDREKDNGSKIVDDAVSGGGNHESVCVKCKCNAPMTFGDGGFDDGRFCADCFRNNVFGKFRLAVTSHAMITPSDNVLVAFSGGSSSRVSLQFVHELQIKALKNYEASRDRSLPVFGVGVAFVDETAAFPALSTEMIDAIEWVRYTVSCLSPPAKDLHVVPVESIFGSDSLDARDGLLKLLDSVPDDTGKEDLLLHLKMLSLQKVAAENGYNRLVLGSCTSRIASHVLTATVKGRGYSLSADIQHVDARWKVPIVLPLRDCVRLEITRLCLLD 284          
BLAST of DY304487 vs. ExPASy Swiss-Prot
Match: CTU2_ORYSI (Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza sativa subsp. indica GN=CTU2 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 6.765e-70
Identity = 131/273 (47.99%), Postives = 175/273 (64.10%), Query Frame = 1
Query:  112 CQSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDXXXXXXXXXXQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSFTADIQYADARWEIPVVLPLRDCLAPELHMPCQLD 930
            C S       E     A E +   +    C KC               C +CFR+NL GKF+LAV SNA++ P D+VL+AFSGGP+SRVALQF+HE++ +A +++D S  ++LPVFGVGV FVDE+     P  EI+ AI++I+ IVS+LS   K +H++ +E +F +   DG  R ++ VD + D TG+ED          QK A ENGY +++LG C S IACHV++ATVKG+GYS  AD+QY D RWEIPVVLPLRDCLA EL + C+LD
Sbjct:   18 CSSSASAAAVEDAAAAAAEKVGRLSLSRECGKCGGGAAAVAVAGGLGLCGECFRANLLGKFKLAVTSNAMVRPTDSVLLAFSGGPASRVALQFIHEMRCKAIESWDVSNSQALPVFGVGVAFVDESVLCSKPRDEIEMAIEDIRSIVSSLSTGVKAMHIVRLEDVFSTESEDGERRLREAVDMIGDDTGREDFLRCLRMLSLQKIAMENGYAKIMLGSCASAIACHVLSATVKGQGYSLPADVQYVDTRWEIPVVLPLRDCLAQELTLLCELD 290          
BLAST of DY304487 vs. ExPASy Swiss-Prot
Match: CTU2_ORYSJ (Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza sativa subsp. japonica GN=CTU2 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.968e-69
Identity = 131/273 (47.99%), Postives = 174/273 (63.74%), Query Frame = 1
Query:  112 CQSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDXXXXXXXXXXQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSFTADIQYADARWEIPVVLPLRDCLAPELHMPCQLD 930
            C S       E     A E +   +    C KC               C +CFR+NL GKF+LAV SNA++ P D+VL+AFSGGP+SRVALQF+HE++ +A +++D S  ++LPVFGVGV FVDE+     P  EI+ AI++I+ IVS+LS   K +H+  +E +F +   DG  R ++ VD + D TG+ED          QK A ENGY +++LG C S IACHV++ATVKG+GYS  AD+QY D RWEIPVVLPLRDCLA EL + C+LD
Sbjct:   18 CSSSASAAAVEDAAAAAAEKVGRLSLSRECGKCGGGAAAVAVAGGLGLCGECFRANLLGKFKLAVTSNAMVRPTDSVLLAFSGGPASRVALQFIHEMRCKAIESWDVSNSQALPVFGVGVAFVDESVLCSKPRDEIEMAIEDIRSIVSSLSTGVKAMHIARLEDVFSTESEDGERRLREAVDMIGDDTGREDFLRCLRMLSLQKIAMENGYAKIMLGSCASAIACHVLSATVKGQGYSLPADVQYVDTRWEIPVVLPLRDCLAQELTLLCELD 290          
BLAST of DY304487 vs. ExPASy Swiss-Prot
Match: CTU2_HUMAN (Cytoplasmic tRNA 2-thiolation protein 2 OS=Homo sapiens GN=CTU2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.980e-14
Identity = 79/300 (26.33%), Postives = 113/300 (37.67%), Query Frame = 1
Query:  181 SNEQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGP-SSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNP----CDGRE------RFKKLVD---------------------------------------------------SVSDATGKEDXXXXXXXXXXQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSFTADIQYADAR-WEIPVVLPLRD 891
            S EQ  CVKCK  +P          C DCF++    KFR  +  N LI P + VL+A+SGGP SS +  Q +  L Q + K            F  GV+FVDE A       E    + E+K I+     P    HV+ +E +F   P    C  +E       +K  VD                                                   SV   T KE+             A  +GY++++ G   +R+A  ++T    GRG     D  ++D R  ++ VV P+RD
Sbjct:   23 SREQK-CVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLR---------FVAGVIFVDEGAACGQSLEERSKTLAEVKPILQATGFP---WHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDSFLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEELLQTLRTHLILHMARAHGYSKVMTGDSCTRLAIKLMTNLALGRGAFLAWDTGFSDERHGDVVVVRPMRD 309          
BLAST of DY304487 vs. ExPASy Swiss-Prot
Match: CTU2_RAT (Cytoplasmic tRNA 2-thiolation protein 2 OS=Rattus norvegicus GN=Ctu2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.173e-13
Identity = 79/325 (24.31%), Postives = 123/325 (37.85%), Query Frame = 1
Query:  112 CQSG-CYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGP-SSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIF---------------------------------------CSNPCDGR-----------------------ERFKKLVDSVSDATGKEDXXXXXXXXXXQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSFTADIQYADAR-WEIPVVLPLRD 891
            CQ+G  Y    +R+  P       S EQ  CVKC    P          C DCF++    KFR  +  N +I P + VL+++SGGP SS +  Q +  L Q + K       R +P    GV++VDE A       +    + E+K I+ N   P    HV+ +E +F                                       C++P  G+                       E   +L  S+   T KE+             A  +GY +++ G   +R+A  ++T    GRG     D  ++D R  ++ +V P+RD
Sbjct:    2 CQAGEDYAGPAQREPPPVPRP---SREQK-CVKCAEGLPVVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRVIFPGEKVLLSWSGGPSSSSMVWQVLEGLSQDSAKRL-----RFVP----GVIYVDEGAACGQSLEDRVKTLAEVKRILGNTGFP---FHVVALEEVFSLPPSVLRRASQEPAGTEEAYKAAVDSFLQQQHVLGTEACASPAQGQGQLRPSHSQEPSGTVGHPKDAQTEALSRLFKSIKTLTAKEELLQTLRTHLTVHVARSHGYRKVMTGESCTRLAIKLMTNLALGRGAFLAWDTGFSDERHGDVVLVRPMRD 310          
BLAST of DY304487 vs. ExPASy Swiss-Prot
Match: CTU2_BOVIN (Cytoplasmic tRNA 2-thiolation protein 2 OS=Bos taurus GN=CTU2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.412e-13
Identity = 71/287 (24.74%), Postives = 110/287 (38.33%), Query Frame = 1
Query:  199 CVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNP----CDGRE---------------------------------------------------RFKKLVDSVSDATGKEDXXXXXXXXXXQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSFTADIQYADAR-WEIPVVLPLRD 891
            CVKCK   P          C DCF++    KFR  +  + LI P + VL+A+SGGPSS   +  V E   R      A + R +P    GVV++DE A       +    + E+KL +     P    H + +E +F   P    C  +E                                                      +L+DSV   T KE+             A  +GY++++ G   +R+A  ++T+   GRG     D  ++D R  ++ VV P+R+
Sbjct:   28 CVKCKEGLPVVVIRAGDAFCRDCFKALYVHKFRAMLGKSRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSRD----SAKRLRFVP----GVVYIDEGAACGQSPEDRARTLAEVKLALQTTGFP---WHAVALEEVFSLPPSALRCSAQEAAGTEGAYKAAVDSFLQQQHALGTNGVERQSQHCAQDPQSPTGPPTTAQTQALSRLIDSVKTLTAKEELLQTLRTHLILHVARNHGYSKVMTGDSCTRLAIKLMTSLALGRGAFLAWDTGFSDERHGDVVVVRPMRE 303          
BLAST of DY304487 vs. ExPASy Swiss-Prot
Match: CTU2_DANRE (Cytoplasmic tRNA 2-thiolation protein 2 OS=Danio rerio GN=ctu2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.457e-13
Identity = 72/315 (22.86%), Postives = 122/315 (38.73%), Query Frame = 1
Query:  124 CYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHE-LQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFC---------------SNPC------------------------------------DGRERFKKLVDSVSDATGKEDXXXXXXXXXXQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSFTADIQYADARW-EIPVVLPLRDCLAPEL 909
            C   E    L+   E I  S     C+KCK              C  CF+     KFR  +  N +I P + VL+A SGG +S   L  V E L + A K     K R +P    G+V++D+         E   +I ++K I +    P     ++P+E +F                SNPC                                    + +   ++L  S+   + K++             A EN Y+++++G   SR+A  +++    GRG +  +D  ++D R+ ++ +V P+RD  + E+
Sbjct:    2 CQVEEDYNGLECNQEKIPVSGLNRKCMKCKEGTAVLIIRVSDAFCRSCFKEYFIHKFRAMLGKNRVIFPQEKVLLAVSGGAASCTMLSQVQEGLSRDAPK-----KLRFMP----GIVYIDDGGACGRSEDERQTSISQLKNIFTQTGFP---YFIVPLEKVFSLPTSVLVPGTFDPDPSNPCYKQAVDKYLKEKQKLREEEAVCAVAQLNLEDSAYLPEHKLALQRLFSSLKTLSAKQEMLQTLRQHLILHVARENSYSKVMMGESCSRLAVKLLSNIALGRGAALASDTGFSDPRFGDVVIVRPMRDYSSKEI 304          
The following BLAST results are available for this feature:
BLAST of DY304487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CTU2_ARATH4.355e-9360.35Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabido... [more]
CTU2_ORYSI6.765e-7047.99Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza s... [more]
CTU2_ORYSJ1.968e-6947.99Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza s... [more]
CTU2_HUMAN8.980e-1426.33Cytoplasmic tRNA 2-thiolation protein 2 OS=Homo sa... [more]
CTU2_RAT1.173e-1324.31Cytoplasmic tRNA 2-thiolation protein 2 OS=Rattus ... [more]
CTU2_BOVIN3.412e-1324.74Cytoplasmic tRNA 2-thiolation protein 2 OS=Bos tau... [more]
CTU2_DANRE4.457e-1322.86Cytoplasmic tRNA 2-thiolation protein 2 OS=Danio r... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YN12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304487 ID=DY304487; Name=DY304487; organism=Citrus clementina; type=EST; length=1270bp
CTTCCTTCTGCTTCAGCTAAAACCCTGGCCTGGATTTGAAGTTCTGAACT
ACGTACTTGAAAGAGCAAAACGCAAAGCATCGAAGCTATGGCGTGCAATT
CCGCGACTGGCTGCCAGTCCGGTTGTTACAAAAACGAATTCGAACGAGAT
TTAAAGCCCGCAACGGAAACAATAAGCGACTCGAATGAGCAAAATCTGTG
CGTAAAGTGCAAGGCCAACGAGCCGACGCCCGGCGCCGGCGAAGATGGGA
AGCATTGCTTGGATTGCTTTAGGAGTAATTTGTTCGGGAAGTTTCGTCTG
GCTGTTGCTTCCAACGCCTTGATCACTCCAGCTGACAACGTTCTCGTCGC
CTTCTCCGGTGGCCCAAGTTCCCGGGTGGCTCTTCAGTTTGTGCATGAGT
TGCAGCAGAGAGCGCAGAAGAATTTTGATGCTAGTAAAGATAGATCTTTA
CCTGTATTTGGTGTCGGAGTTGTGTTCGTCGATGAAACCGCTTATTATCC
AGTTCCTTCTTCGGAAATTGACAATGCTATCCAAGAGATTAAATTGATTG
TATCAAATCTATCCCCGCCAACAAAAGAGTTACATGTCATTCCAATAGAA
AGTATCTTCTGTTCAAATCCGTGTGATGGAAGGGAGAGATTCAAAAAGTT
AGTGGATTCTGTTAGTGATGCCACTGGAAAAGAAGATCTTCTGTTGCAGC
TAAGGATGTTGTCTTTGCAAAAGTTTGCTTCAGAAAATGGTTACAATAGA
CTGTTACTAGGGCTATGCACATCAAGGATTGCTTGCCATGTTATAACAGC
AACTGTGAAGGGTCGAGGCTATTCTTTTACCGCAGATATACAATATGCTG
ATGCTAGGTGGGAGATCCCTGTAGTGCTTCCACTTCGTGACTGTCTTGCT
CCAGAGCTCCACATGCCTTGCCAACTTGACTGGGGCGTTCAAAAATCGGG
GAGTTACTTAAACCAACTCCCTCCGGTATCATTGGCTTGGTATCCTCATT
TGGTGAAAATCCTCCAGGGAAGAAAATCCCTCCCCGGAAAGAACAACATT
AATCCGGAACCCCCGGAAAAACCGGAATCCCCTTTCCCTTCCCACAAAAA
TTCCCCCAAACAAAAAAGAACTTCTCCTGGTTCCCTCTTTTTCCCCCCCC
CCAAAAAACCCCCCCGAAAAAAAAATTTAAAACTTCACCGCCCCCCAAAA
AAAAAAACCCCTCCTTCTTTCTCCCTTCCCGAGAAGCTCTCTTCCTCCCT
TTTTTCTCTTTTTTTTTGTG
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