DY304489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 4.584e-42 Identity = 107/300 (35.67%), Postives = 161/300 (53.67%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAP---PYNGYGYQASGSYGLMQYRLAPMQNQPGFHGIFPPVNQGNAMRGASPDLSSNMGA*NLCYASFRVLGASGLPGVGRVFRNPLPIPG 1075 VKLFVG VP+ TE ++ F++ V EV +IKDK T +GCCFV + ++AD+A+ A HN+ TLPG + P+QV+YADGE ER LE KLF+G L K +E EV +F +G ++D+ ++R + S+GC F+KY +KE A+AA++ +NG + M G + PL+V++A+ ++ + + P G+ P A P + +G + +R A +N + PP N G +RGA D G L LG G+P + NPLP+PG Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPG-------------ESREMAPPVGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN------VGPPSNTG--IRGAGSDFPPKPGQATLPSNQGGPLGGYGVPPL-----NPLPVPG 393
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: CELF3_DANRE (CUG-BP- and ETR-3-like factor 3 OS=Danio rerio GN=tnrc4 PE=2 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 2.781e-39 Identity = 80/172 (46.51%), Postives = 120/172 (69.77%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 709 +KLF+GQ+P+++ E L +F++F + E+ +IKDK T +GC F+ +R+ A KA NA H +KTLPG + P+QVK AD E R + KLF+GML K +S+A+V +F +G+I++ +LRG SKGCAF+KY++ +A AA+ A++G + G+S LVVK+ADTEKE Sbjct: 7 IKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNALHEQKTLPGMNRPIQVKPADSE-GRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKE 177 HSP 2 Score: 73.559 bits (179), Expect = 2.898e-12 Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 197 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELER 451 KLFVG + K +++A + MF+ F ++E +++ AS+GC FV S EA A++A H +TLPGASS L VK+AD E ER Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDG-ASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKER 178
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: CELF5_XENTR (CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropicalis GN=brunol5 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 6.196e-39 Identity = 77/172 (44.77%), Postives = 118/172 (68.60%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 709 +KLFVGQ+P+++ E L +F++F + E+ ++KD+ T +GC F+ +R A KA A H +KTLPG + P+QVK AD E + KLF+GML K SE EV+++F +G+I++ +LRG +SKGCAF+K+ + +A AA++A++G M G+S LVVK+ADT+KE Sbjct: 47 IKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHGSQTMPGASSSLVVKFADTDKE 218 HSP 2 Score: 70.8626 bits (172), Expect = 1.879e-11 Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 197 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELER 451 KLFVG + K +E ++ +MF+ F ++E ++++ +S+GC FV S EA A+ A H +T+PGASS L VK+AD + ER Sbjct: 136 KLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPDG-SSKGCAFVKFSSHAEAQAAIQALHGSQTMPGASSSLVVKFADTDKER 219
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: CELF4_DANRE (CUG-BP- and ETR-3-like factor 4 OS=Danio rerio GN=brunol4 PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 1.803e-38 Identity = 79/172 (45.93%), Postives = 114/172 (66.28%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 709 +KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ +R+ A KA A H +KTLPG + P+QVK AD E + KLF+GML K E +V LF +G+I++ ILRG SKGCAF+KY T +A AA+ A++G M G+S LVVK+ADT+KE Sbjct: 47 IKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFADTDKE 218
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: CEL3B_XENLA (CUG-BP- and ETR-3-like factor 3-B OS=Xenopus laevis GN=tnrc4-B PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 1.803e-38 Identity = 77/172 (44.77%), Postives = 116/172 (67.44%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 709 +KLF+GQ+P+++ E L +F++F + E+ +IKDK T +GC F+ +R+ A KA +A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +G I + +LRG TSKGCAF+K++T +A AA+ A++G + G+S LVVK+ADTEKE Sbjct: 7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178 HSP 2 Score: 72.7886 bits (177), Expect = 4.944e-12 Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 2 Query: 197 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELER 451 KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+NA H +TLPGASS L VK+AD E ER Sbjct: 96 KLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPDG-TSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: CELF3_HUMAN (CUG-BP- and ETR-3-like factor 3 OS=Homo sapiens GN=TNRC4 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.355e-38 Identity = 78/172 (45.35%), Postives = 114/172 (66.28%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 709 +KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178 HSP 2 Score: 72.4034 bits (176), Expect = 6.457e-12 Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 2 Query: 197 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELER 451 KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N H+ +TLPGASS L VK+AD E ER Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: CELF3_BOVIN (CUG-BP- and ETR-3-like factor 3 OS=Bos taurus GN=TNRC4 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.355e-38 Identity = 78/172 (45.35%), Postives = 114/172 (66.28%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 709 +KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178 HSP 2 Score: 72.4034 bits (176), Expect = 6.457e-12 Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 2 Query: 197 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELER 451 KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N H+ +TLPGASS L VK+AD E ER Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: CEL3A_XENLA (CUG-BP- and ETR-3-like factor 3-A OS=Xenopus laevis GN=tnrc4-A PE=2 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 3.075e-38 Identity = 77/172 (44.77%), Postives = 116/172 (67.44%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 709 +KLF+GQ+P+++ E L +F++F + E+ +IKDK T +GC F+ +R+ A KA +A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +G I + +LRG TSKGCAF+K++T +A AA+ A++G + G+S LVVK+ADTEKE Sbjct: 7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178 HSP 2 Score: 72.7886 bits (177), Expect = 4.944e-12 Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 2 Query: 197 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELER 451 KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+NA H +TLPGASS L VK+AD E ER Sbjct: 96 KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPDG-TSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: CELF4_MACFA (CUG-BP- and ETR-3-like factor 4 OS=Macaca fascicularis GN=BRUNOL4 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 4.016e-38 Identity = 80/172 (46.51%), Postives = 115/172 (66.86%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 709 +KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +A H +KTLPG + P+QVK AD E R + KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 224 HSP 2 Score: 68.9366 bits (167), Expect = 7.139e-11 Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2 Query: 197 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKL 466 KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA H +T+PGASS L VK+AD + ER ++ Sbjct: 142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 230
BLAST of DY304489 vs. ExPASy Swiss-Prot
Match: CELF3_MOUSE (CUG-BP- and ETR-3-like factor 3 OS=Mus musculus GN=Tnrc4 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 6.851e-38 Identity = 79/172 (45.93%), Postives = 115/172 (66.86%), Query Frame = 2 Query: 194 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 709 +KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +A H +KTLPG + P+QVK AD E R + KLF+GML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 177 HSP 2 Score: 72.4034 bits (176), Expect = 6.457e-12 Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 2 Query: 197 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELER 451 KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N H+ +TLPGASS L VK+AD E ER Sbjct: 95 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 178 The following BLAST results are available for this feature:
BLAST of DY304489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY304489 ID=DY304489; Name=DY304489; organism=Citrus clementina; type=EST; length=1273bpback to top |