DY304492

Overview
NameDY304492
Unique NameDY304492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1223
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_DANRE (Large subunit GTPase 1 homolog OS=Danio rerio GN=lsg1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.072e-48
Identity = 109/244 (44.67%), Postives = 149/244 (61.07%), Query Frame = 1
Query:  208 KNEKTGLGRALVKHHNHMIQETKEKGKFYRKQHKKV---------------LESVTDVNDIDAVIQQAEEAEAYPVPILLINLDEGSRSSTREMMMTAEERKEEEALHAGN---LRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            + E +GLGRAL+K       E    G+ YR+    +               L+SVT+ + +D  +  AE A    V   L N+ +   +  R  ++++EE +  + LH  N   LR+PRRPPW+ S S E L   E+ SFL WRR LARLEE +KL+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RCPDLE Y +E+  +K  +LL+NKADLL    R+ WA+YF+   I  VFWS
Sbjct:    7 RGEGSGLGRALIK-------ERLNAGRGYRRNDTWLHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAELAGTEFVAEKL-NI-KFVPAEARAGLLSSEESRRLKKLHEENKQLLRIPRRPPWDESTSPEVLQQTEKDSFLTWRRDLARLEEEQKLILTPFERNLDFWRQLWRVIERSDVVVQIVDARNPLLFRCPDLEKYVKEVSVHKVNMLLLNKADLLTREQRRAWARYFQKEGIRAVFWS 241          
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_HUMAN (Large subunit GTPase 1 homolog OS=Homo sapiens GN=LSG1 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.226e-44
Identity = 97/231 (41.99%), Postives = 138/231 (59.74%), Query Frame = 1
Query:  226 LGRALVKHHNHMIQETKEKGKFYRKQH--------KKVLESVTDVNDIDAVIQQAEEAEAYPVPILLINLDEGSRSSTREMMMTAEERKEEEALHAGN---LRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            LGRAL++H     +  +    +             +  L+SVT+ + +D  +  AE A    V   L N+ +   +  R  +++ EE +  + LH  N   L +PRRP WN + + EEL   E+ +FL WRR L RLEE +KL+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y +E+D  K  ++L+NKADLL    R  WA YF+  D+  +FWS
Sbjct:   12 LGRALMRHQTQRSRSHRHTDSWLHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAELAGTEFVAEKL-NI-KFVPAEARTGLLSFEESQRIKKLHEENKQFLCIPRRPNWNQNTTPEELKQAEKDNFLEWRRQLVRLEEEQKLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEMDANKENVILINKADLLTAEQRSAWAMYFEKEDVKVIFWS 240          
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_CHICK (Large subunit GTPase 1 homolog OS=Gallus gallus GN=LSG1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.568e-44
Identity = 102/241 (42.32%), Postives = 140/241 (58.09%), Query Frame = 1
Query:  202 MGKNEKTGLGRALVKHHN----------HMIQETKEKGKFYRKQHKKVLESVTDVNDIDAVIQQAEEAEAYPVPILLINLDEGSRSSTREMMMTAEERKEEEALHAGN---LRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            MGK   TGLGR+L +             H  +   E G   R        S  + + ++  +  AE A    V   L N+   S  S R  ++TA+E +    LH  N   LR+PRRP W+ + S E+L   ER+SFL WRR LA LEE +KL+LTPFE+NL+ WRQLWRV+ERSD++V +VDAR+PL +RC DLE+Y +E+   K  ++L+NKADLL    R  WA++F+   +  VFWS
Sbjct:    1 MGKKRGTGLGRSLQRQRGSERRGASSWLHASEVVGESGPERR--------SAVEQSPLEEFLATAELAGTRFVAERL-NIQFVSAQS-RTGLLTAQEAQHVRQLHEENRQFLRIPRRPYWDRTTSSEDLKQAERESFLEWRRQLAHLEEEKKLILTPFERNLEFWRQLWRVIERSDIVVQIVDARNPLLFRCQDLESYVKEVSNDKENMILINKADLLSEEQRAAWAQFFEKEGVKVVFWS 231          
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_MACFA (Large subunit GTPase 1 homolog OS=Macaca fascicularis GN=LSG1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.660e-44
Identity = 97/231 (41.99%), Postives = 137/231 (59.31%), Query Frame = 1
Query:  226 LGRALVKHHNHMIQETKEKGKFYRKQH--------KKVLESVTDVNDIDAVIQQAEEAEAYPVPILLINLDEGSRSSTREMMMTAEERKEEEALHAGN---LRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            LGRAL++H     +  +    +             +  L+SVT+ + +D  +  AE A    V   L N+ +   +  R  +++ EE +  + LH  N   L +PRRP WN + + EEL   E+ +FL WRR L RLEE +KL+LT FE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y +EID  K  ++L+NKADLL    R  WA YF+  D+  +FWS
Sbjct:   12 LGRALMRHQTQRSRSHRHTDSWLHTSELNDGYDWGRLNLQSVTEESSLDDFLATAELAGTEFVAEKL-NI-KFVPAEARTGLLSFEESQRIKKLHEENKQFLCIPRRPNWNKNTTPEELKQAEKDNFLEWRRQLVRLEEEQKLILTSFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEIDASKENVILINKADLLTAEQRSAWATYFEKEDVKVIFWS 240          
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_RAT (Large subunit GTPase 1 homolog OS=Rattus norvegicus GN=Lsg1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.340e-42
Identity = 97/242 (40.08%), Postives = 138/242 (57.02%), Query Frame = 1
Query:  202 MGKNEKTG---LGRALVKHHNHMIQETKEKGKFYRKQH--------KKVLESVTDVNDIDAVIQQAEEAEAYPVPILLINLDEGSRSSTREMMMTAEERKEEEALHAGN---LRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            MG+    G   LGR L++H     +  +    +             +  L+SVT+ + ++  +  AE A    V   L N+ +      R  +++ EE +  + LH  N   L +PRRP W+   S EEL   E+ +FL WRR L RLEE +KL+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y +EID  K  ++L+NKADLL    R  WA +F+   +  +FWS
Sbjct:    1 MGRRRAPGGGSLGRVLIRHQTQRSRSHRHTDSWLHTSELNDGYDWGRLNLQSVTEQSSLEDFLATAELAGTEFVAEKL-NI-KFVPPEARTGLLSFEESQRIKRLHEENRQFLCIPRRPNWDRKTSPEELKQAEKDNFLKWRRQLVRLEEEQKLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEIDAAKENVILINKADLLTAEQRVAWAVHFEKEGVKVIFWS 240          
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_BOVIN (Large subunit GTPase 1 homolog OS=Bos taurus GN=LSG1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.269e-41
Identity = 88/193 (45.60%), Postives = 123/193 (63.73%), Query Frame = 1
Query:  316 LESVTDVNDIDAVIQQAEEAEAYPVPILLINLDEGSRSSTREMMMTAEERKEEEALHAGN---LRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            L+SVT+ + +D  +  AE A    V   L N+ +      R  +++ EE +  + LH  N   L +PRRP W+   S EEL   E+ +FL WRR L  LEE + L+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y + ID+ K  ++L+NKADLL    R  WA++FK  ++  +FWS
Sbjct:   50 LQSVTEQSSLDDFLATAELAGTEFVAEKL-NI-KFVPPEARTGLLSFEENQRIKKLHEENKQFLCIPRRPKWDQKTSPEELKQAEKDNFLEWRRQLVWLEEEQNLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKTIDDNKENVILINKADLLTAEQRSAWAEFFKKENVKVIFWS 240          
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_MOUSE (Large subunit GTPase 1 homolog OS=Mus musculus GN=Lsg1 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 3.693e-41
Identity = 89/193 (46.11%), Postives = 123/193 (63.73%), Query Frame = 1
Query:  316 LESVTDVNDIDAVIQQAEEAEAYPVPILLINLDEGSRSSTREMMMTAEERKEEEALHAGN---LRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            L+SVT+ + ++  +  AE A    V   L N+ +      R  +++ EE +  + LH  N   L +PRRP W+   S EEL   E+ +FL WRR L RLEE +KL+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y +EID  K  ++L+NKADLL    R  WA +F+   +  +FWS
Sbjct:   50 LQSVTEQSSLEDFLATAELAGTEFVAEKL-NI-KFVPPEARTGLLSFEESQRIKKLHEENRQFLCIPRRPNWDRKTSPEELKQAEKDNFLKWRRQLVRLEEEQKLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEIDAAKENVILINKADLLTAEQRFAWAVHFEKEGVKVIFWS 240          
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_YEAST (Large subunit GTPase 1 OS=Saccharomyces cerevisiae GN=LSG1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 8.226e-41
Identity = 95/200 (47.50%), Postives = 127/200 (63.50%), Query Frame = 1
Query:  316 LESVTDVNDIDAVIQQAEEAEAYPVP-----ILLINLDEGSRSSTRE-MMMTAEERKEEEALH---AGNLRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEE-NEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            L SVT  + +D  +  A  A+          + +I +D G+ S+T +   MT E+R    A     A +L VPRRP WN  MS  +LD  E+++FL WRR LA L+E NE L+LTPFE+N+++W+QLWRV+ERSDL+V +VDAR+PL +R  DLE Y +E D+ K  LLLVNKADLL    R  WAKYF   +I F F+S
Sbjct:   65 LRSVTQESALDEFLSTAALADKDFTADRHSNVKIIRMDSGNDSATSQGFSMTNEQRGNLNAKQRALAKDLIVPRRPEWNEGMSKFQLDRQEKEAFLEWRRKLAHLQESNEDLLLTPFERNIEVWKQLWRVVERSDLVVQIVDARNPLLFRSVDLERYVKESDDRKANLLLVNKADLLTKKQRIAWAKYFISKNISFTFYS 264          
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_DROME (Large subunit GTPase 1 homolog OS=Drosophila melanogaster GN=ns3 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.083e-40
Identity = 100/247 (40.49%), Postives = 141/247 (57.09%), Query Frame = 1
Query:  202 MGKNEKTG---LGRALVKHH----------NHMIQETKEKGKFYRKQHKKVLESVTDVNDIDAVIQQAE----EAEAYPVPILLINLDE--GSRSSTREMMMTAEERKEEEALHAGNLRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            MGK  K G   LGR L+K            N  +  T E    Y    +  L SVT+ +   A ++ AE    E +A  + I  +N  +  G  S T+E  M    +K +E  H   L++PRRP W    S EEL   E ++FL WRR LA L+E+E++++TP+EKNL+ WRQLWRV+ERSD++V +VDAR+PL +R  DLE Y +E++  K  ++LVNK+DLL    R+ WA+YF    I   F+S
Sbjct:    1 MGKKNKGGAPNLGRQLIKDRFGHTQRRKVDNDTMLHTTELQDGY-DWGRLNLSSVTEESSFQAFLRTAELAGTEFQAEKLNITFVNPKQRVGLLSKTQEQRM---HQKHDE--HRDQLKIPRRPKWTKETSAEELVRAENEAFLDWRRDLALLQEDEEILMTPYEKNLEFWRQLWRVVERSDVVVQIVDARNPLLFRSADLERYVKEVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFYS 241          
BLAST of DY304492 vs. ExPASy Swiss-Prot
Match: LSG1_SCHPO (Large subunit GTPase 1 OS=Schizosaccharomyces pombe GN=lsg1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 6.964e-40
Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 1
Query:  223 GLGRAL----VKHHNHMIQETKEKGKFYRKQHKKVLESVTDVNDIDAVIQQAEEAEAYPVPILLINLDEGSRSSTREMMMTAEER---KEEEALHAGNLRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDEYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 885
            GLGRA+     K+  +     K       K H+  L SVT   D+D  +  AE  E   +     N+           +++ EE    K+++  +   L +PRRP W+ + +  ELD  ER+SFL WRR+LA+L++ E  ++TPFE+NL++WRQLWRV+ERSD++V +VDAR+PLF+R   LE Y +E+   K+  LLVNKAD+L    R  W+ YF +++I F+F+S
Sbjct:   11 GLGRAIQSDFTKNRRNRKGGLKHIVDSDPKAHRAALRSVTHETDLDEFLNTAELGEVEFIAEKQ-NVTVIQNPEQNPFLLSKEEAARSKQKQEKNKDRLTIPRRPHWDQTTTAVELDRMERESFLNWRRNLAQLQDVEGFIVTPFERNLEIWRQLWRVIERSDVVVQIVDARNPLFFRSAHLEQYVKEVGPSKKNFLLVNKADMLTEEQRNYWSSYFNENNIPFLFFS 237          
The following BLAST results are available for this feature:
BLAST of DY304492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
LSG1_DANRE1.072e-4844.67Large subunit GTPase 1 homolog OS=Danio rerio GN=l... [more]
LSG1_HUMAN1.226e-4441.99Large subunit GTPase 1 homolog OS=Homo sapiens GN=... [more]
LSG1_CHICK3.568e-4442.32Large subunit GTPase 1 homolog OS=Gallus gallus GN... [more]
LSG1_MACFA4.660e-4441.99Large subunit GTPase 1 homolog OS=Macaca fascicula... [more]
LSG1_RAT3.340e-4240.08Large subunit GTPase 1 homolog OS=Rattus norvegicu... [more]
LSG1_BOVIN1.269e-4145.60Large subunit GTPase 1 homolog OS=Bos taurus GN=LS... [more]
LSG1_MOUSE3.693e-4146.11Large subunit GTPase 1 homolog OS=Mus musculus GN=... [more]
LSG1_YEAST8.226e-4147.50Large subunit GTPase 1 OS=Saccharomyces cerevisiae... [more]
LSG1_DROME4.083e-4040.49Large subunit GTPase 1 homolog OS=Drosophila melan... [more]
LSG1_SCHPO6.964e-4039.47Large subunit GTPase 1 OS=Schizosaccharomyces pomb... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ8YN18RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304492 ID=DY304492; Name=DY304492; organism=Citrus clementina; type=EST; length=1223bp
CTGCTGCTGCTGCTGCTGCATACACATTCATCAACCGTTTATCTTGCCAC
CGCCAAGGGTTCCAGCCGTGTTATTTGTTATAATAATATTGCCGGCAATT
GTCATTCATCATCATCACTTTCTTTTAATCCCCTTTAGTATCTATCAGCC
ACCAGCATATATAGCATCCGTCGATTAGGGTTTCATCATCAAAGCGACCA
AATGGGGAAGAACGAAAAGACAGGACTCGGAAGAGCCCTAGTGAAGCACC
ACAATCACATGATCCAAGAAACCAAAGAAAAGGGCAAATTCTACAGGAAG
CAACACAAGAAGGTTCTTGAATCCGTCACCGACGTCAACGACATCGACGC
CGTCATTCAACAGGCCGAGGAAGCCGAGGCCTACCCCGTCCCTATCCTCC
TCATCAATTTAGATGAGGGGTCCAGGAGTAGTACCAGAGAGATGATGATG
ACGGCGGAGGAGAGGAAGGAGGAGGAGGCGTTGCACGCTGGCAACCTTAG
AGTGCCACGTAGGCCGCCGTGGAATCCTTCAATGTCTGTGGAGGAGCTTG
ATGATAATGAGAGACAATCTTTTTTAGCTTGGCGGCGGAGTCTTGCCAGG
CTGGAGGAAAATGAGAAGCTTGTTCTTACTCCGTTTGAGAAGAATTTGGA
TATGTGGAGACAGCTTTGGCGGGTTCTTGAACGTAGTGACTTGATTGTGA
TGGTTGTTGATGCACGAGACCCCCTGTTCTACCGTTGCCCTGATCTTGAG
GCTTATGCACGAGAAATTGACGAGTATAAGAGAACACTGCTTTTGGTGAA
CAAGGCAGATCTTTTACCATTTTCTGTCAGGAAAAGATGGGCAAAGTACT
TTAAGGATCATGATATCCTCTTTGTGTTCTGGTCCGCTAAAGCTGCCTCT
GCAGCTCTAGAGGGGTAAGCAGTCCGTGACACTTGGAGGACACAGAATCC
CCAACAAAAAATAAATGAACCTGAAACAAAATATATAACAGAAAAAAACC
TTTGTGCCCCTTTTGAAAAAGAAAGCCAAAAAAAAAAATGGAAAATAAAA
AAGAAAAAAACGGTCTCCAATTACCAAAGGGCAAAACCAAAAGTTTCATT
CTTGTTTAAATAGAAAAAAAATTTGAAGGAAAAAATAGTACCCACCCCCC
CAAAAAATTTAAAATTGTGTGTGGAAAAATTTTTGGGTGGGGGGGGTAAA
ACTCTTTAAAATAAATGAAAAAG
back to top