DY304503

Overview
NameDY304503
Unique NameDY304503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304503 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.787e-34
Identity = 93/160 (58.13%), Postives = 106/160 (66.25%), Query Frame = 2 
Query:  560 LRRRWRDVLPLRIRDFATRSRSGRNRILDWAEIL----NNSIEFRLEAPESDRYIGNPADYMD-AAGYEALLQNLAESDGG----RRGAPRAAKSAVLELPTVEILSEQE--TIVCAICKDMVNVGETATKFPCGHVNHGGLYWPVAW-NPGITGPVCRF 1003
            LRRR R   PL      T+SR+GRNRILDWAEIL    +NSIEFR+E   SDRY GNPADY+D AAGYEALLQNLAE DGG    RRGAP AAKSA+  L T E+ S +    +VCA+CKD + +GET  K PCGH  HG    P  W     + PVCRF
Sbjct:  151 LRRRNR--FPLT----TTQSRTGRNRILDWAEILMGIEDNSIEFRME---SDRYAGNPADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVP--WLGTRNSCPVCRF 299

HSP 2 Score: 68.9366 bits (167), Expect = 7.092e-11
Identity = 41/101 (40.59%), Postives = 53/101 (52.48%), Query Frame = 2 
Query:   92 YWCHHCEKRVSIETLANLPDVICHECKNGFVESIXXXXXXXXXXXXXXXD----HVDDPSFGSQFLQVLRLIAQAARDEDAPQQLTQDPQYGHDFLRIELD 382
            +WC+HC KRV +ETL +   V+C EC  GFVESI                    +V+D S GS FLQ+LRL+A A      P+ L     Y  DF R+EL+
Sbjct:   15 HWCYHCNKRVVVETLDDF--VVCCECNKGFVESIQPTPAAYSSPAPPQPLSPDLNVEDSSIGSHFLQMLRLLAHAPSQRSPPRHL-DVLSYEDDFFRLELN 112
The following BLAST results are available for this feature:
BLAST of DY304503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CIP8_ARATH7.787e-3458.13E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YO06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304503 ID=DY304503; Name=DY304503; organism=Citrus clementina; type=EST; length=1267bp
TGCAATCCGTAACTGCAGCTTGATGGCCGAATCTCCATCTCAGGCACCGA
CACCGACAACACCTACTGCGTCGGATACTGACCCGACGCAATATTGGTGC
CATCACTGTGAGAAACGTGTGTCAATCGAAACCCTTGCCAATCTCCCCGA
TGTTATTTGTCATGAATGTAAGAACGGCTTTGTCGAATCAATCCCCGTAA
CGTTAACCCCACCCTTTTCCCCACCTTCATTGACCCCTGATCACGTCGAT
GACCCCTCCTTCGGATCCCAGTTCCTTCAGGTCCTGCGTTTAATAGCGCA
AGCCGCGCGTGATGAGGACGCGCCCCAGCAGCTTACCCAGGATCCCCAGT
ATGGACATGATTTTCTTCGAATTGAGCTCGATGGATGGGAGAACGATGCG
CGTGAGGATGAAAATGATGAAAACGAAGAGAACCGAAACGTTGACGAAGA
AGGGGACGAAAATGAAAACGAAAACGAAGACGACGAAGAGAATGAAGGAG
GAGAAGATCGATCTGATAACGAGAACGAAGAGAATATAGAAAATGAAGAC
GAAGAAGATCTGAGACGGAGGTGGCGGGATGTGCTCCCCCTACGGATCCG
AGACTTCGCGACCCGATCGAGATCCGGTCGTAATCGGATCCTGGACTGGG
CCGAGATTCTGAACAACTCGATAGAATTTCGACTTGAAGCTCCGGAATCC
GACCGGTACATAGGCAATCCTGCGGATTACATGGACGCAGCTGGATACGA
GGCGTTGTTGCAGAACTTAGCTGAAAGTGACGGTGGTAGGAGAGGGGCCC
CGCGCGCGGCGAAATCTGCTGTGTTAGAGCTACCAACGGTGGAGATTTTG
TCTGAGCAGGAGACTATTGTATGTGCTATATGTAAGGATATGGTCAATGT
TGGTGAAACTGCTACGAAGTTTCCTTGTGGACATGTAAATCACGGGGGAC
TGTATTGGCCCGTTGCCTGGAATCCAGGGATAACTGGCCCGGTCTGTAGG
TTTTGAATTGCCCACCGAATGGATCCCAAATACAAAGAAAAAAAGGAAAA
AAAAAAATTTCCTCCCCCGTGCCCTTGTTGGGGGGAGCCTCCCGGCCCCC
CCTCGGAGGGGAATTTTAATTTTTAGGTTGTATGGCCCCCTGGTTTTCTT
TAAAAAAAAATTTTAGGTTTTTTTTTTTTCCATTTTCTCGTGTTTTCCTA
GGGACCCCTTTTTTTTCTCCCCCTTTTTTTTTTTTTTTTCGCCTTTTGGA
GGGAAAATTTTATAAAA
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