DY304506

Overview
NameDY304506
Unique NameDY304506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1265
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_ARATH (DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.781e-46
Identity = 133/376 (35.37%), Postives = 188/376 (50.00%), Query Frame = 1
Query:    1 RILRPLLVVENMGKIKSLEGKNYTFQA-----------LLDHGIIELVGTEEEEDCCTAWGIKYLLKDI---EDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            R  RPL +V+N  K+   +   Y  Q            L+  G IE + TEEEE    +  I  L++     E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   +        H H    P    G NAIVA++ + GYNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  + G  D LDDDG    G  +   D++IGK                +  DHSI L+H+E GMV +V+L++N DG  F  V +R V  P   +KFSS  GQKG  G+       P +  +G  P++  NPHA
Sbjct:  623 RCSRPLFIVDNQ-KLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME--------HLHFRQLPA---GINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP-WTIEGVTPDIIVNPHA 977          
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_SOLLC (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.359e-45
Identity = 131/375 (34.93%), Postives = 188/375 (50.13%), Query Frame = 1
Query:    1 RILRPLLVVENMG------KIKSLEGKNYTFQA----LLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            R  RPL +VE          I++L+ +    +     L+  G IE + TEEEE    +  I  L++   +  D     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   +        H H    P    G NAIVA++ + GYNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  + G  D LDDDG    G  +   D++IGK                +  DHS  L+H+E GMV +V+L++N DG  F  V +R V  P   +KFSS  GQKG  G+       P +  +G  P++  NPHA
Sbjct:  622 RCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME--------HLHFRQLPA---GINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP-WTVEGITPDIIVNPHA 976          
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_DICDI (DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.772e-45
Identity = 125/365 (34.25%), Postives = 186/365 (50.96%), Query Frame = 1
Query:    1 RILRPLLVVE-NMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSG--------ADHSIKLKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            R  RPL VV+ N  +IK       +    Y +Q LL  GI+E +  EEEE    A   + L+    ++    +THCE+  S +LG+ C IIPF +H+ + R  YQ+     QA+G   TN  +R+DT++H LFYPQ+PL  T   +      Y H   LP      GQN  VA+  + GYNQEDS+++N+++++RG+FRS   R+YK E   K+  +     +          + G  + +DDDG    G  +   DI+IGK         D G         D S  L+ +E G+V +V+L+++ +G  F  V +R +  P   +KFSS  GQKG  G+       P F  +G  P++  NPHA
Sbjct:  617 RCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAM-GKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSME------YLHFRELPA-----GQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDE-QKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLP-FTVEGIVPDIIVNPHA 967          
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_YEAST (DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces cerevisiae GN=RPB2 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 2.177e-44
Identity = 122/354 (34.46%), Postives = 181/354 (51.13%), Query Frame = 1
Query:   61 KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            + YT+ +LL+ G++E +  EEEE    A   + L           D++  K I+       FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +   + +       ++ K G  D LDDDG    G  +   D++IGK                  S  D S  L+ TE G+V +V++++N DG  F  V +R    P   +KF+S  GQKG  G+       P F  +G  P+L  NPHA
Sbjct:  677 EEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSI-TETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMP-FTAEGIVPDLIINPHA 1016          
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_DROME (DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 4.850e-44
Identity = 129/373 (34.58%), Postives = 188/373 (50.40%), Query Frame = 1
Query:    1 RILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ------SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            RI RPLL+VEN         +  +K  +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   RSYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+VIGK                  S  D S  L+++E G+V +V+L+ N +G  F  + +R V  P   +KF+S  GQKG  G+    ++   F  +G  P++  NPHA
Sbjct:  621 RICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYK-DSENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI-QYRQEDMAFTCEGLAPDIIINPHA 973          
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_CANGA (DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata GN=RPB2 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.272e-44
Identity = 122/357 (34.17%), Postives = 183/357 (51.26%), Query Frame = 1
Query:   55 EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----------LKDIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            + ++YT+ +LL+ G++E +  EEEE    A   + L           ++++  K IK       FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN + R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +   + +       ++ K G  D LD+DG    G  +   DI+IGK                  S  D S  L+ TE G+V +V++++N DG  F  V +R    P   +KF+S  GQKG  G+       P F  +G  P+L  NPHA
Sbjct:  673 DAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDIPKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNFRMDTMANILYYPQKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSI-TETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMP-FTAEGIVPDLIINPHA 1015          
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_ASHGO (DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii GN=RPB2 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.144e-43
Identity = 122/357 (34.17%), Postives = 181/357 (50.70%), Query Frame = 1
Query:   55 EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----------LKDIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            E  NYT+ +LL+ GI+E +  EEEE    A   + L            +++  + IK       FTHCE+  S +LG++  +IPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++ G+FRS   RSY  +     M +   S +       ++ K G  + LDDDG    G  +   DI+IGK                  S  D S  L+ TE G+V +V++++N +G  F  V +R    P   +KF+S  GQKG  G+       P F  +G  P+L  NPHA
Sbjct:  672 EDINYTWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPARRIKAIHHSNTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFFRSYMDQEKRIGMSI-TESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDIIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMP-FTAEGVVPDLIINPHA 1014          
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_CAEEL (DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans GN=rpb-2 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 5.362e-43
Identity = 127/373 (34.05%), Postives = 188/373 (50.40%), Query Frame = 1
Query:    1 RILRPLLVVENMG-----------KIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK-FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK---AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----DSGADHSIK----------LKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            R+ RPLL+VEN             K  + E   YT+  L+  G++EL+ + EEE    A     + +D+         THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G  TTN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G NAIVA+  + GYNQEDS++MN ++++RG+FRS   RSY+   A +DN   ++  + + +  +      +    D LD+DG    G  +   D++IGK       D   D S K          L+ +E G+V +V+LS N DG  F  + +R V  P   +KF+S  GQKG  G+       P F  +G  P++  NPHA
Sbjct:  626 RVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAM----MPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCS----GMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMP-FTAEGLTPDIIINPHA 977          
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_HUMAN (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 9.146e-43
Identity = 125/373 (33.51%), Postives = 190/373 (50.94%), Query Frame = 1
Query:    1 RILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            RI RPLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   RSYK +   K   + +V  + + +         +    D LDDDG    G  +   D++IGK                  +  D S  L+ +E G+V +V+++ N +G  F  + +R V  P   +KF+S  GQKG  G+       P F  +G  P++  NPHA
Sbjct:  620 RICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQ----GMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMP-FTCEGITPDIIINPHA 971          
BLAST of DY304506 vs. ExPASy Swiss-Prot
Match: RPB2_MOUSE (DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 2.661e-42
Identity = 124/373 (33.24%), Postives = 190/373 (50.94%), Query Frame = 1
Query:    1 RILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSGVSLRQVPSPCS*NKFSSMPGQKGGFGLFGVPRKFPFFPYQGKFPNLEKNPHA 1029
            RI RPLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   RSYK +   K   + +V  + + +         +    + LDDDG    G  +   D++IGK                  +  D S  L+ +E G+V +V+++ N +G  F  + +R V  P   +KF+S  GQKG  G+       P F  +G  P++  NPHA
Sbjct:  620 RICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQ----GMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMP-FTCEGITPDIIINPHA 971          
The following BLAST results are available for this feature:
BLAST of DY304506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RPB2_ARATH1.781e-4635.37DNA-directed RNA polymerase II subunit RPB2 OS=Ara... [more]
RPB2_SOLLC3.359e-4534.93DNA-directed RNA polymerase II subunit RPB2 OS=Sol... [more]
RPB2_DICDI9.772e-4534.25DNA-directed RNA polymerase II subunit rpb2 OS=Dic... [more]
RPB2_YEAST2.177e-4434.46DNA-directed RNA polymerase II subunit RPB2 OS=Sac... [more]
RPB2_DROME4.850e-4434.58DNA-directed RNA polymerase II subunit RPB2 OS=Dro... [more]
RPB2_CANGA8.272e-4434.17DNA-directed RNA polymerase II subunit RPB2 OS=Can... [more]
RPB2_ASHGO3.144e-4334.17DNA-directed RNA polymerase II subunit RPB2 OS=Ash... [more]
RPB2_CAEEL5.362e-4334.05DNA-directed RNA polymerase II subunit RPB2 OS=Cae... [more]
RPB2_HUMAN9.146e-4333.51DNA-directed RNA polymerase II subunit RPB2 OS=Hom... [more]
RPB2_MOUSE2.661e-4233.24DNA-directed RNA polymerase II subunit RPB2 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YO10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304506 ID=DY304506; Name=DY304506; organism=Citrus clementina; type=EST; length=1265bp
AGGATTTTACGCCCTCTTTTGGTGGTTGAAAATATGGGCAAGATTAAATC
CCTGGAGGGGAAAAATTACACCTTTCAAGCCCTTTTGGACCATGGAATAA
TTGAACTTGTTGGAACTGAAGAAGAGGAAGATTGCTGTACTGCATGGGGT
ATTAAATACCTCTTAAAGGACATTGAAGATAAAAAACCCATAAAGTTCAC
TCACTGTGAACTTGATATGTCCTTCTTGCTTGGTTTGAGTTGTGGGATTA
TCCCATTTGCAAACCATGACCATGCAAGGAGGGTTCTGTATCAATCACAG
AAGCATTCTTCCCAGGCTATAGGTTTTCCAACAACCAATCCCAGCATCAG
AGTTGATACTCTATCACACCAGCTTTTCTACCCTCAAAGGCCCCTTTTTC
GGACAATGATTTCAGATTGTCTTGGAAAACCAGGTTATGGCCATAATCAT
ATACTGCCAAGGCCAGAGCTCTACAATGGGCAGAATGCGATTGTGGCTGT
GAATGTCCACTTGGGATACAACCAAGAGGACTCCCTGGTGATGAACCGTG
CCTCTCTGGAACGTGGTATGTTTCGATCTGAGCACATTAGAAGTTACAAG
GCTGAGGTCGATAACAAAGAGATGCAGGTGAAGAGGCGGTCATCTGATGA
TATGGTGAATTTTGGAAAGATTCAAAGTAAAATTGGCCGCGTCGACAGCC
TAGATGATGATGGCTTTCCCTTCATTGGTGCTAACCTCCAGAGTGGTGAC
ATCGTGATTGGAAAGTATGCTGATTCTGGGGCTGATCACAGTATAAAACT
GAAGCACACTGAACGGGGAATGGTTCAAAAAGTCGTGCTATCTTCTAATG
ATGATGGAAAGAATTTTTCTGGGGTATCTCTGAGACAGGTTCCTTCCCCC
TGTTCTTGAAACAAGTTCTCTAGCATGCCTGGGCAAAAAGGTGGTTTTGG
GCTTTTTGGAGTCCCCAGAAAATTTCCCTTTTTCCCATACCAGGGCAAAT
TCCCCAACTTGGAAAAAAACCCCCATGCTTTTCTCCTCCAGGCCAAACTC
CCGGGGCCACCTTTTAAAAGCCGGCCTTAGGGAAAGGGAAATTCGTTCCT
TTAAGGAAAGGGGGAAATTCCCTTTGGGCCTGAAAAAAAAAATTCCCCCC
CCCCCTTTTTTCCCCCTCCCCCCTCTCCGTTTGGATTTCACCTATCTCCC
CCGGAGAACCCCCCCTCTCCCCCACAGGGGCCGGCGGGGGAGATATTTCT
TCCCCCTAAAAAGGG
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