DY304508

Overview
NameDY304508
Unique NameDY304508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.901e-34
Identity = 79/140 (56.43%), Postives = 91/140 (65.00%), Query Frame = 3
Query:   27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            MASSMISS TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMK                                        VWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPC
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMK----------------------------------------VWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPC 100          

HSP 2 Score: 75.8702 bits (185), Expect = 4.958e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query:  724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIPT 876
            L+  +VYRE++ SPGYYDGRYW MWKLPM+GCTDA QVL E+  + +  PT
Sbjct:  105 LEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPT 155          
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.141e-32
Identity = 74/137 (54.01%), Postives = 83/137 (60.58%), Query Frame = 3
Query:   36 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            ++ISS  V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM                                        QVWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPC
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCM----------------------------------------QVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPC 98          

HSP 2 Score: 78.9518 bits (193), Expect = 5.857e-14
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 1
Query:  724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEV 849
            L+KG+VYRE+H SPGYYDGRYWTMW+LP++G TD+ QVLKE+
Sbjct:  103 LEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKEL 144          
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.141e-32
Identity = 80/140 (57.14%), Postives = 85/140 (60.71%), Query Frame = 3
Query:   27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            MA SMISS TVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM                                        QVWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPC
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPC 100          

HSP 2 Score: 81.2629 bits (199), Expect = 1.180e-14
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1
Query:  724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIPT 876
            L+ G+VYREH+ SPGYYDGRYWTMWKLPM+GC D+ QVLKE+    +  P+
Sbjct:  105 LEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPS 155          
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 6.229e-32
Identity = 77/140 (55.00%), Postives = 85/140 (60.71%), Query Frame = 3
Query:   27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            MASSMISS T+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM                                        QVWPP G KKFETLSYLP L+   L KE+ YLLRS WIPC
Sbjct:    1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPC 100          

HSP 2 Score: 72.0182 bits (175), Expect = 7.160e-12
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873
            L++G+V+R++ S P YYDGRYWTMWKLPM+GCTD+ QVL+E+    +  P
Sbjct:  105 LEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYP 154          
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 8.135e-32
Identity = 76/140 (54.29%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            MASSM+S+  VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM                                        QVWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PC
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCM----------------------------------------QVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPC 100          

HSP 2 Score: 80.8777 bits (198), Expect = 2.449e-17
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1
Query:  724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEV 849
            L+ G VYRE+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+
Sbjct:  105 LEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQEL 146          

HSP 3 Score: 30.0314 bits (66), Expect = 2.449e-17
Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  842 RRLGEVQKEYPHFFLRITEFEHQPSVQCLSFL 937
            + L E+ K YP  + RI  F++   VQC+SFL
Sbjct:  144 QELDEMIKAYPDCYGRIIGFDNVRQVQCISFL 175          
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.388e-31
Identity = 74/140 (52.86%), Postives = 85/140 (60.71%), Query Frame = 3
Query:   27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            MASSM+S+ TVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMK                                        VWP  G+KKFETLSYLPPL+ E L  E+ YLLRSGWIPC
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMK----------------------------------------VWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPC 100          

HSP 2 Score: 78.9518 bits (193), Expect = 5.857e-14
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1
Query:  724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEV 849
            L+ G VYREH   PGYYDGRYWTMWKLPM+GCTDA QVLKE+
Sbjct:  105 LEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKEL 146          
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 3.091e-31
Identity = 76/140 (54.29%), Postives = 86/140 (61.43%), Query Frame = 3
Query:   27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            MASSM+SS  VAT NR   AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM                                        QVWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PC
Sbjct:    1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPC 98          

HSP 2 Score: 75.8702 bits (185), Expect = 5.387e-17
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1
Query:  733 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873
            G+VYREH ++PGYYDGRYWTMWKLPM+GCTD  QV+ E+  + +  P
Sbjct:  106 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 152          

HSP 3 Score: 33.8834 bits (76), Expect = 5.387e-17
Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = 2
Query:  848 LGEVQKEYPHFFLRITEFEHQPSVQCLSFLGCQAPS 955
            L E +K YP  F+RI  F++   VQC+SF+  +  S
Sbjct:  144 LEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 179          
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.037e-31
Identity = 80/142 (56.34%), Postives = 87/142 (61.27%), Query Frame = 3
Query:   27 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            MASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K +NDITSIASNGGRVQCM                                        QVWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PC
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPC 101          

HSP 2 Score: 83.5741 bits (205), Expect = 2.378e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:  724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873
            L+ G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD+ QVLKE+  + +  P
Sbjct:  106 LETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYP 155          
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.175e-30
Identity = 80/142 (56.34%), Postives = 87/142 (61.27%), Query Frame = 3
Query:   27 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            MASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K +NDITSIASNGGRVQCM                                        QVWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PC
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPC 101          

HSP 2 Score: 83.5741 bits (205), Expect = 2.378e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:  724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873
            L+ G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD+ QVLKE+  + +  P
Sbjct:  106 LEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYP 155          
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.534e-30
Identity = 72/142 (50.70%), Postives = 90/142 (63.38%), Query Frame = 3
Query:   27 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446
            MASSM+S+  VAT  A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM                                        QVWPP G KKFETLSYLPPLS+E+LLKE+ YLL +GW+PC
Sbjct:    1 MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPC 102          

HSP 2 Score: 75.8702 bits (185), Expect = 6.992e-17
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1
Query:  733 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873
            G+VYREH ++PGYYDGRYWTMWKLPM+GCTD  QV+ E+  + +  P
Sbjct:  110 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 156          

HSP 3 Score: 33.4982 bits (75), Expect = 6.992e-17
Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = 2
Query:  848 LGEVQKEYPHFFLRITEFEHQPSVQCLSFLGCQAPS 955
            L E +K YP  F+RI  F++   VQC+SF+  +  S
Sbjct:  148 LEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPAS 183          
The following BLAST results are available for this feature:
BLAST of DY304508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RBS_FAGCR3.901e-3456.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA2.141e-3254.01Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE2.141e-3257.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GOSHI6.229e-3255.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR8.135e-3254.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES1.388e-3152.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_MESCR3.091e-3154.29Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_PYRPY4.037e-3156.34Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.175e-3056.34Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_MESCR1.534e-3050.70Ribulose bisphosphate carboxylase small chain 6, c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YO12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304508 ID=DY304508; Name=DY304508; organism=Citrus clementina; type=EST; length=1130bp
AAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCG
ACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGT
CGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGA
AGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAA
TGCATGAAGGTCATCATCATAATCATACAAGAATTCATTTCTTCTTTTGC
TTCTTTAAATTGACGGCTTTCTTCTTTTAGCTCTCAATTATGTTTTTAAT
TAATTTTCTTGTGAGCTTGTATGTTACAGGTGTGGCCACCAACTGGCTTG
AAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTT
GCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCACCCCAGGTTTTGAAGGAGGTTG
GGGGAAGTCCAGAAGGAATACCCACATTTCTTCCTCCGAATTACCGAATT
TGAACACCAGCCTTCAGTGCAGTGCCTCAGTTTCCTTGGCTGCCAAGCCC
CCAGCGTCCAAGTTCCCAATTAATTTTGGTTAACCCCCCCAGCAAAAATG
GTGGATAATTATAAGTGTAACCCCCCAAAAGGACCTTTCAACCAAGGGGG
GGTTTCGGTTTGCCTTTTATTTTTTCCTTAAGGCGGGCTTTTTGCGGCCG
CCCCAAACATTTTTTTGGTTTTTCCCCCCC
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