DY304508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 3.901e-34 Identity = 79/140 (56.43%), Postives = 91/140 (65.00%), Query Frame = 3 Query: 27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 MASSMISS TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMK VWPP GL+KFETLSYLPPLS E+L K+I YL+ GWIPC Sbjct: 1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMK----------------------------------------VWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPC 100 HSP 2 Score: 75.8702 bits (185), Expect = 4.958e-13 Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 Query: 724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIPT 876 L+ +VYRE++ SPGYYDGRYW MWKLPM+GCTDA QVL E+ + + PT Sbjct: 105 LEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPT 155
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 2.141e-32 Identity = 74/137 (54.01%), Postives = 83/137 (60.58%), Query Frame = 3 Query: 36 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 ++ISS V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM QVWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPC Sbjct: 2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCM----------------------------------------QVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPC 98 HSP 2 Score: 78.9518 bits (193), Expect = 5.857e-14 Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 1 Query: 724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEV 849 L+KG+VYRE+H SPGYYDGRYWTMW+LP++G TD+ QVLKE+ Sbjct: 103 LEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKEL 144
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 2.141e-32 Identity = 80/140 (57.14%), Postives = 85/140 (60.71%), Query Frame = 3 Query: 27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 MA SMISS TVA +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM QVWPP GLKKFETLSYLPPLS E L KE+ YLLR IPC Sbjct: 1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPC 100 HSP 2 Score: 81.2629 bits (199), Expect = 1.180e-14 Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1 Query: 724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIPT 876 L+ G+VYREH+ SPGYYDGRYWTMWKLPM+GC D+ QVLKE+ + P+ Sbjct: 105 LEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPS 155
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 6.229e-32 Identity = 77/140 (55.00%), Postives = 85/140 (60.71%), Query Frame = 3 Query: 27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 MASSMISS T+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM QVWPP G KKFETLSYLP L+ L KE+ YLLRS WIPC Sbjct: 1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPC 100 HSP 2 Score: 72.0182 bits (175), Expect = 7.160e-12 Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 Query: 724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873 L++G+V+R++ S P YYDGRYWTMWKLPM+GCTD+ QVL+E+ + P Sbjct: 105 LEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYP 154
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 8.135e-32 Identity = 76/140 (54.29%), Postives = 84/140 (60.00%), Query Frame = 3 Query: 27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 MASSM+S+ VA NRAS AQASMVAPFTGLKS+SAFP T+KT DITSIASNGGRVQCM QVWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PC Sbjct: 1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCM----------------------------------------QVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPC 100 HSP 2 Score: 80.8777 bits (198), Expect = 2.449e-17 Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1 Query: 724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEV 849 L+ G VYRE+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ Sbjct: 105 LEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQEL 146 HSP 3 Score: 30.0314 bits (66), Expect = 2.449e-17 Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 2 Query: 842 RRLGEVQKEYPHFFLRITEFEHQPSVQCLSFL 937 + L E+ K YP + RI F++ VQC+SFL Sbjct: 144 QELDEMIKAYPDCYGRIIGFDNVRQVQCISFL 175
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.388e-31 Identity = 74/140 (52.86%), Postives = 85/140 (60.71%), Query Frame = 3 Query: 27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 MASSM+S+ TVA+ NR S AQA+MVAPFTGLKS+ FP T+KTN+DITSI SNGG+VQCMK VWP G+KKFETLSYLPPL+ E L E+ YLLRSGWIPC Sbjct: 1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMK----------------------------------------VWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPC 100 HSP 2 Score: 78.9518 bits (193), Expect = 5.857e-14 Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 Query: 724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEV 849 L+ G VYREH PGYYDGRYWTMWKLPM+GCTDA QVLKE+ Sbjct: 105 LEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKEL 146
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 3.091e-31 Identity = 76/140 (54.29%), Postives = 86/140 (61.43%), Query Frame = 3 Query: 27 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 MASSM+SS VAT NR AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM QVWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PC Sbjct: 1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPC 98 HSP 2 Score: 75.8702 bits (185), Expect = 5.387e-17 Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 Query: 733 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873 G+VYREH ++PGYYDGRYWTMWKLPM+GCTD QV+ E+ + + P Sbjct: 106 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 152 HSP 3 Score: 33.8834 bits (76), Expect = 5.387e-17 Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = 2 Query: 848 LGEVQKEYPHFFLRITEFEHQPSVQCLSFLGCQAPS 955 L E +K YP F+RI F++ VQC+SF+ + S Sbjct: 144 LEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 179
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 4.037e-31 Identity = 80/142 (56.34%), Postives = 87/142 (61.27%), Query Frame = 3 Query: 27 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 MASSMISS TVAT A+R + AQA MVAPF GLKSSSAFP T+K +NDITSIASNGGRVQCM QVWPP GLKKFETLSYLPPLS E+L KE+ YLLR W+PC Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPC 101 HSP 2 Score: 83.5741 bits (205), Expect = 2.378e-15 Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 Query: 724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873 L+ G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD+ QVLKE+ + + P Sbjct: 106 LETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYP 155
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.175e-30 Identity = 80/142 (56.34%), Postives = 87/142 (61.27%), Query Frame = 3 Query: 27 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 MASSMISS TVAT A+R + AQA MVAPFTGLKSSSA P T+K +NDITSIASNGGRVQCM QVWPP GLKKFETLSYLPPLS E+L KE+ YLLR W+PC Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPC 101 HSP 2 Score: 83.5741 bits (205), Expect = 2.378e-15 Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 Query: 724 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873 L+ G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD+ QVLKE+ + + P Sbjct: 106 LEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYP 155
BLAST of DY304508 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.534e-30 Identity = 72/142 (50.70%), Postives = 90/142 (63.38%), Query Frame = 3 Query: 27 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 446 MASSM+S+ VAT A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM QVWPP G KKFETLSYLPPLS+E+LLKE+ YLL +GW+PC Sbjct: 1 MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPC 102 HSP 2 Score: 75.8702 bits (185), Expect = 6.992e-17 Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 Query: 733 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDAPQVLKEVGGSPEGIP 873 G+VYREH ++PGYYDGRYWTMWKLPM+GCTD QV+ E+ + + P Sbjct: 110 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 156 HSP 3 Score: 33.4982 bits (75), Expect = 6.992e-17 Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = 2 Query: 848 LGEVQKEYPHFFLRITEFEHQPSVQCLSFLGCQAPS 955 L E +K YP F+RI F++ VQC+SF+ + S Sbjct: 148 LEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPAS 183 The following BLAST results are available for this feature:
BLAST of DY304508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >DY304508 ID=DY304508; Name=DY304508; organism=Citrus clementina; type=EST; length=1130bpback to top |