DY304561

Overview
NameDY304561
Unique NameDY304561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length913
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304561 vs. ExPASy Swiss-Prot
Match: CC075_HUMAN (UPF0405 protein C3orf75 OS=Homo sapiens GN=C3orf75 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.531e-16
Identity = 66/249 (26.51%), Postives = 126/249 (50.60%), Query Frame = 3
Query:  111 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFAHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDKGK-----------SSEGGLVLLYEKILKTICGLPGDKK--DYVTIMMDDISLVEVAANGGSDYVLDFLHYCHSLTS-EFDCSLIMLNHEDIYSSMERPTLILQ-MEYLADILVKAEPLSTGLATDVHGQLTVLNKGTSHRLGSSGHRIHSF--HYKVKENGVEYF*PG 806
            G++ L+ D  +T GSF++H  +   L       + FVA    F+HY  + +KLG +L   R+  + +F + L      V + +           ++ G L  L+E + + +  +   +    Y  +++DD+S++ ++   G+  VLDF+HYC +    E   ++++L H+   +  E   ++L  + + + ++++AE L+TG   DVHGQL +L +  S     + HR  SF   YK+++  V +F  G
Sbjct:   19 GKLTLLCDA-KTDGSFLVHHFLSFYLKANCK--VCFVALIQSFSHYSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEARWTYPVLLVDDLSVL-LSLGMGAVAVLDFIHYCRATVCWELKGNMVVLVHDSGDAEDEENDILLNGLSHQSHLILRAEGLATGFCRDVHGQLRILWRRPSQ---PAVHRDQSFTYQYKIQDKSVSFFAKG 260          
BLAST of DY304561 vs. ExPASy Swiss-Prot
Match: CC075_MOUSE (UPF0405 protein C3orf75 homolog OS=Mus musculus GN=Tmem103 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.027e-15
Identity = 66/249 (26.51%), Postives = 124/249 (49.80%), Query Frame = 3
Query:  111 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFAHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRC-----------PDVDKGKSSEGGLVLLYEKILKTICGLPGDKKD----YVTIMMDDISLVEVAANGGSDYVLDFLHYCHS-LTSEFDCSLIMLNHEDIYSSME-RPTLILQMEYLADILVKAEPLSTGLATDVHGQLTVLNKGTSHRLGSSGHRIHSFHYKVKENGVEYF*PG 806
            G + L+ D  +T GSF++H  +   L       + FVA    F+HY+ + +KLG +L   RD  + +F + L               P     ++  G L  LY  I  T+   P D ++    Y  +++D++S++ ++   G+  VLDF+ YC + +  E   +++ L H+   ++ E   TL+  + + + ++++AE L+TG   DVHGQL++L +  S         + ++ YK+++  V +F  G
Sbjct:   19 GTLTLLCDA-KTDGSFLVHHFLSFYLKANCK--VCFVALVQSFSHYNIVGQKLGVSLTAARDRGQLVFLEGLKSSVEVLFHSQDEPHPLQFLREAGTGNLQSLYTFIQDTL--KPADSEESPWKYPVLLVDNLSVL-LSLGVGAVAVLDFMQYCRATVCCELKGNVVALVHDTEGATDEGNDTLLNGLSHQSHLILRAEGLATGFCKDVHGQLSILWRRPSRSTAQRAQSL-TYQYKIQDKNVSFFAKG 260          
BLAST of DY304561 vs. ExPASy Swiss-Prot
Match: CC075_XENLA (UPF0405 protein C3orf75 homolog OS=Xenopus laevis GN=tmem103 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.989e-15
Identity = 66/244 (27.05%), Postives = 121/244 (49.59%), Query Frame = 3
Query:  111 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFAHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDV--DKGKSSE----------GGLVLLYEKILKTICGLPGDKKDYVTIMMDDISLVEVAANGGSDYVLDFLHYCH-SLTSEFDCSLIMLNHEDIYSSMERPTLILQ-MEYLADILVKAEPLSTGLATDVHGQLTVLNKGTSHRLGSSG-HRIHSFHYKVKENGVEYF 797
            G+  L+ D   T GSF++H  +   L       + FVA    F+HY+ + +KLG NL + +D  + +F + L      +  DK ++ E            L  LY  +   +    G       +++DD+S++ ++    S  VLDF+HYC  ++ +++  +++ L H    S  E   L+L+ + + + ++++AE LSTG   DVHGQL ++    S   G  G ++   + YK+++  V +F
Sbjct:   19 GKFTLLCDS-NTDGSFLVHHFLSYYLRAGCR--VCFVALVQSFSHYNIVAQKLGVNLSSAKDEGQLVFLEGLKSYTDLLFGDKSEAEETNPLCFLRAGSDLRPLYSFVSAALAPSAGQPWKCPVLILDDLSVL-LSLGVTSLQVLDFMHYCRATVCTQYKGNVLCLVHGAEESGDEENELVLRSLSHQSHLILQAEGLSTGFCKDVHGQLKIIRGAVSS--GKRGKNQPEIYQYKIQDKHVAFF 256          
BLAST of DY304561 vs. ExPASy Swiss-Prot
Match: CC075_RAT (UPF0405 protein C3orf75 homolog OS=Rattus norvegicus GN=Tmem103 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.640e-13
Identity = 61/249 (24.50%), Postives = 122/249 (49.00%), Query Frame = 3
Query:  111 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFAHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRC-----------PDVDKGKSSEGGLVLLYEKILKTICGLPGDKKD----YVTIMMDDISLVEVAANGGSDYVLDFLHYCH-SLTSEFDCSLIMLNHEDIYSSMERPTLILQ-MEYLADILVKAEPLSTGLATDVHGQLTVLNKGTSHRLGSSGHRIHSFHYKVKENGVEYF*PG 806
            G++ L+ D  +T GSF++H  +   L       + FVA    F+HY+ + +KLG +L   R+  + +F + L               P     ++  G L  LY  I  T+   P D  +       +++D++S++ ++   G+  VLDF+ YC  ++  E   +++ L H+   +  E   ++L  + + + ++++ + L+TG   DVHGQL++L + +S         + ++ YK+++  V +F  G
Sbjct:   19 GKLTLLCDA-KTDGSFLVHHFLSFYLKANCK--VCFVALVQSFSHYNIVGQKLGVSLTAARERGQLVFLEGLKSSVEVLFHSQEEPHPLQFLREAGAGNLQSLYTFIQDTL--KPADSGESPWKCPVLLVDNLSVL-LSLGVGAVAVLDFMQYCRATVCCELKGNVVALVHDTEGAEDEENNILLNGLSHQSHLILRTQGLATGFCKDVHGQLSILWRRSSQPTAQRARSL-TYQYKIQDKNVSFFAKG 260          
BLAST of DY304561 vs. ExPASy Swiss-Prot
Match: CC075_XENTR (UPF0405 protein C3orf75 homolog OS=Xenopus tropicalis GN=tmem103 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.063e-12
Identity = 58/243 (23.87%), Postives = 113/243 (46.50%), Query Frame = 3
Query:  111 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFAHYDRILRKLGCNLVTQRDNKRFIFF-------DMLMLRCPDVDKGK-----SSEGGLVLLYEKILKTICGLPGDKKDYVTIMMDDISLVEVAANGGSDYVLDFLHYCH-SLTSEFDCSLIMLNHEDIYSSMERPTLILQ-MEYLADILVKAEPLSTGLATDVHGQLTVLNKGTSHRLGSSGHRIHSFHYKVKENGVEYF 797
            G+  L+ D  +T GSF++H  +   L       + FVA    F+HY  + +KLG NL + +D  + +F        D+L    P+ +         +   L  LY  +   +    G       +++DD+S++ ++       +LDF+HYC  ++ +++  +++ L H    S  E   L+ + + + + +++ AE LS+G   +VHGQL +     S        +   + YK+++  V +F
Sbjct:   19 GKFTLLCDS-KTDGSFLVHHFLSYYLRAGCR--VCFVALVQSFSHYSIVAQKLGVNLSSAKDEGQLVFLEGLRSYTDLLFGDNPEAEVTNPLCFLRAGSDLKPLYSFVSAALAPSAGQSWKCPVLILDDVSVL-LSLGVPPLQLLDFMHYCRATVCTQYQGNVVCLVHGAEESGDEEKELLRRSLSHQSQVILWAEGLSSGFCKEVHGQLKIFRGAVSSGKKRGQTQPEIYQYKIQDKHVTFF 257          
The following BLAST results are available for this feature:
BLAST of DY304561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CC075_HUMAN3.531e-1626.51UPF0405 protein C3orf75 OS=Homo sapiens GN=C3orf75... [more]
CC075_MOUSE1.027e-1526.51UPF0405 protein C3orf75 homolog OS=Mus musculus GN... [more]
CC075_XENLA2.989e-1527.05UPF0405 protein C3orf75 homolog OS=Xenopus laevis ... [more]
CC075_RAT1.640e-1324.50UPF0405 protein C3orf75 homolog OS=Rattus norvegic... [more]
CC075_XENTR1.063e-1223.87UPF0405 protein C3orf75 homolog OS=Xenopus tropica... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YA20RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304561 ID=DY304561; Name=DY304561; organism=Citrus clementina; type=EST; length=913bp
CCTAAACCCTATTTCACATTCACTCTCACTCGTAGATGGAGAATCAATAT
TTGAATCTCCTTGACAGAGCTTTAGGGCTCGACGGGCCGAGCGAGCCGTG
GCCACTCAGCGGCCGAGTTGTGTTAATCGAGGACTGCGTCGAGACAAGCG
GCTCGTTCGTGCTTCACCAGCTCGTAAAACGCTCTCTCTCTCCGACTTCA
TCAAATGTTATCATCTTCGTCGCCTTCGCCAACCCTTTCGCTCACTATGA
TCGAATCCTGCGTAAACTCGGATGCAATCTAGTGACACAAAGGGATAACA
AGAGATTCATTTTCTTTGACATGCTTATGCTGCGGTGCCCAGATGTAGAT
AAAGGAAAATCCAGTGAAGGTGGACTTGTTTTGCTGTATGAGAAAATACT
GAAAACTATATGTGGCTTACCGGGAGATAAGAAGGACTACGTTACTATTA
TGATGGATGATATTTCTCTCGTGGAGGTGGCTGCAAATGGTGGATCTGAT
TATGTCTTGGACTTCCTGCATTACTGCCACTCTTTGACGTCCGAATTTGA
TTGTTCGTTAATCATGCTTAATCATGAGGATATTTATTCGAGTATGGAGA
GGCCTACACTTATATTACAGATGGAGTATCTTGCGGACATCTTGGTTAAG
GCAGAGCCTTTGAGCACTGGTTTGGCAACTGATGTGCATGGACAGTTGAC
GGTTTTAAACAAGGGAACTTCTCACAGGTTAGGGAGCTCAGGGCACAGGA
TACATAGTTTTCACTACAAGGTCAAGGAAAACGGTGTTGAATATTTCTAG
CCTGGGAGCCGCGTCTGAAAATCATACAATTCCAATGGCTCAAGGGAAGA
TGGATTATTAACGCATCCCTAGGCGGATATGTAATTTACGGTCTGTGGGA
ATCAAAAAATTTC
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