DY304564

Overview
NameDY304564
Unique NameDY304564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.288e-57
Identity = 103/137 (75.18%), Postives = 117/137 (85.40%), Query Frame = 1
Query:  184 FPITARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQ 594
            FP TAR IS +  P  N+  +LGFG RP PDPA++  SAIAQGPDDDVP+PGQQFAQFGAGCFWG ELA+QRVPGVTKTEVGYS G++ NP+YEDVCS TT HNE+VRVQYDPKE SF++LLD+FW RHDPTTLNRQ
Sbjct:   40 FPKTARSISVYKSPMNNLFTRLGFGSRPQPDPAAS--SAIAQGPDDDVPSPGQQFAQFGAGCFWGAELAYQRVPGVTKTEVGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQ 174          
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.748e-57
Identity = 105/140 (75.00%), Postives = 118/140 (84.29%), Query Frame = 1
Query:  184 FPITAR-PISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQVG 600
            FP T+R PIS +  P  N+ N+LGFG RP    A   ++AIAQGPDDDVP+ GQQFAQFGAGCFWGVELA+QRVPGVTKTEVGYS G +HNPSYEDVC+GTT HNEVVRVQYDPKECSF++LLD+FW RHDPTTLNRQ G
Sbjct:   39 FPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQ-ADPSSAAIAQGPDDDVPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGG 177          
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.617e-54
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  184 FPITA-RPI-----STHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQ 594
            FP+T+ +P+     S+     M+ L +LG G R +P  AS + S+IAQGPDDD+PAPGQQFAQFGAGCFWGVELAFQRVPGV+KTEVGY+QG+LHNP+Y D+CSGTTNH+EVVRVQYDPK CSFD+LLD FW RHDPTTLNRQ
Sbjct:   35 FPVTSTKPLFTLRHSSSTPKIMSWLGRLGXGTR-TPADASMDQSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQ 176          
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.001e-34
Identity = 68/105 (64.76%), Postives = 81/105 (77.14%), Query Frame = 1
Query:  283 STENSAIAQGPDDDVP-APGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQ 594
            ST N A+   PD D P  PG +FAQF AGCFWGVELAFQRV GV KTEVGYSQG +H+P+Y+ +CSGTT H E +R+Q+DP  C +  LL +FW+RHDPTTLNRQ
Sbjct:   10 STTNPAL--DPDLDSPDQPGLEFAQFAAGCFWGVELAFQRVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTLNRQ 112          
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  280 ASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQVG 600
            +ST N+       D    PG + AQF +GCFWG EL FQRV GV KTEVGYSQG++H+P+Y  VCSGTTNH+EVVRVQ+DP+ C +  LL +FW+RHDPTTLNRQ G
Sbjct:    3 SSTTNNPALDLDSDTPENPGHELAQFASGCFWGSELRFQRVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGG 109          
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.300e-25
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 1
Query:  349 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQ 594
            A FGAGCFWGVE AF++V GV  T VGY  G+L NP+YEDVC+G T H EVV V +DP    +  LLD+FW+ HDPTTLNRQ
Sbjct:   10 ATFGAGCFWGVEDAFRKVDGVVSTRVGYMGGHLENPTYEDVCTGLTGHAEVVEVTFDPDVVGYSDLLDVFWSIHDPTTLNRQ 91          
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.101e-24
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 1
Query:  349 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQ 594
            A F AGCFW VEL FQRV GVTKT VGY+ G + NP+Y  VCSG T   E V ++YDP++ +++ LL +FW++HDPTTLNRQ
Sbjct:    4 ATFAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWSKHDPTTLNRQ 85          
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_THEVU (Peptide methionine sulfoxide reductase msrA OS=Thermoactinomyces vulgaris GN=msrA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.438e-24
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1
Query:  349 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQ 594
            A FGAGCFWGVE  F++VPGV  T VGY  G   NP+YE+VC+  T H EVV+V+YDP++ S++ LL++FW  H+PTTLNRQ
Sbjct:    2 ATFGAGCFWGVEETFRQVPGVIDTAVGYMGGTTENPTYEEVCTDKTGHAEVVQVEYDPEQVSYEELLNVFWDNHNPTTLNRQ 83          
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_METMJ (Peptide methionine sulfoxide reductase msrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.438e-24
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = 1
Query:  328 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQ 594
            P    + A FGAGCFWGVE AF+RVPGV +T VG+  G + NP+Y +VC+G T H EVV+V YDP   S+  LLD FW  HDPTT NRQ
Sbjct:    3 PEKSLERATFGAGCFWGVEEAFRRVPGVVETAVGFMGGTVENPTYPEVCTGRTGHAEVVQVTYDPGTVSYRALLDTFWDAHDPTTPNRQ 91          
BLAST of DY304564 vs. ExPASy Swiss-Prot
Match: MSRA_RHORT (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=msrA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.217e-23
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  349 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQ 594
            A F AGCFWGVE  F+++PGVT T VGY+ G+   P+Y  VC+G T H E VRV YDP + +++ LLD+FWA HDPT ++RQ
Sbjct:    4 ATFAAGCFWGVEETFRKIPGVTGTTVGYTGGHFKEPTYRQVCAGDTGHAEAVRVDYDPDKVTYEQLLDVFWAAHDPTQVDRQ 85          
The following BLAST results are available for this feature:
BLAST of DY304564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
MSRA_BRANA1.288e-5775.18Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_ARATH3.748e-5775.00Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_LACSA6.617e-5470.63Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_SOLLC2.001e-3464.76Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_FRAAN3.414e-3461.68Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_METTH1.300e-2563.41Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_DICDI1.101e-2459.76Peptide methionine sulfoxide reductase OS=Dictyost... [more]
MSRA_THEVU1.438e-2459.76Peptide methionine sulfoxide reductase msrA OS=The... [more]
MSRA_METMJ1.438e-2458.43Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_RHORT1.217e-2356.10Peptide methionine sulfoxide reductase msrA OS=Rho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YA23RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304564 ID=DY304564; Name=DY304564; organism=Citrus clementina; type=EST; length=858bp
GAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTAAA
TAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCT
CCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAGAAC
CCTCTTTCTCTCTCTAAACCCAATCCGACCCATTTCCCTATCACTGCCCG
ACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCG
GCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCC
ATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTGC
CCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAG
TGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCAT
AACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAATGAAGT
TGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTG
ATATGTTTTGGGCTCGCCATGATCCTACCACGCTTAATCGGCAGGTGGGT
CTTTGTTTAAATTCCTTGAATTAAAGTGGGTTTTGGTTAATTTAAATGTT
TCTGTTTTGTAACTTTAGTAATTTTGCGGTTTTGATGATTTGTGTCTTTT
GGCTTAAAATGACAAACTTCGGTATAAGGATGATCTTTCTATTTATCTTT
TCTCCTTCAGGCAAAAATTGTTTTTCTGGCAAAGGGTTGGTGGGGGGTTT
TTAAATTCTGAACTTTCCCACCTTCGAATTTCATTTTGGTTAAAATGGTA
AAATTTCC
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