DY304565

Overview
NameDY304565
Unique NameDY304565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304565 vs. ExPASy Swiss-Prot
Match: MGRN1_RAT (Probable E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.556e-15
Identity = 64/212 (30.19%), Postives = 113/212 (53.30%), Query Frame = 1
Query:  274 HQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FLVAFTFDAAAPGSITVAFFGKEDV--DCTVIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT-KVNAEIYPIIVRAEARPADSSEAEANPTGNSQITMAVFEKKEEGGFPVQVIKQILWVNRMRYELQEIYGIGN-----TVAGDE--TEFGKKSVFCLSE 846
            H+   T+R+ VN++K++LR+   + D ++P +        + + FTFDA A  +IT+     E+     TV + K   L+  T+ +++G+ Q+F  P    ID S + +  L   ++  ++P++++A     D  E     TG++ + +A FEK  +G F V+ +KQ   V+R+ Y LQEIYGI N     T   D+  ++   + V CLS+
Sbjct:   79 HEPVKTLRSLVNIRKDSLRLVRYKDDTDSPTEDGEKPRVLYSLEFTFDADARVAITIYCQAVEEFVNGMTVYSCKNPSLQSETVHYKRGVSQQFSLP-SFKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEV----TGHAHVLLAAFEKHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSD 285          
BLAST of DY304565 vs. ExPASy Swiss-Prot
Match: MGRN1_MOUSE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.466e-15
Identity = 63/212 (29.72%), Postives = 113/212 (53.30%), Query Frame = 1
Query:  274 HQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FLVAFTFDAAAPGSITVAFFGKEDV--DCTVIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT-KVNAEIYPIIVRAEARPADSSEAEANPTGNSQITMAVFEKKEEGGFPVQVIKQILWVNRMRYELQEIYGIGN-----TVAGDE--TEFGKKSVFCLSE 846
            H+   T+R+ VN++K++LR+   + D ++P +        + + FTFDA A  +IT+     E++     V + K   L+  T+ +++G+ Q+F  P    ID S + +  L   ++  ++P++++A     D  E     TG++ + +A FEK  +G F V+ +KQ   V+R+ Y LQEIYGI N     T   D+  ++   + V CLS+
Sbjct:   78 HEPVKTLRSLVNIRKDSLRLVRYKEDADSPTEDGEKPRVLYSLEFTFDADARVAITIYCQAVEELVNGVAVYSCKNPSLQSETVHYKRGVSQQFSLP-SFKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEV----TGHAHVLLAAFEKHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSD 284          
BLAST of DY304565 vs. ExPASy Swiss-Prot
Match: MGRN1_HUMAN (Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.912e-15
Identity = 63/212 (29.72%), Postives = 112/212 (52.83%), Query Frame = 1
Query:  274 HQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FLVAFTFDAAAPGSITVAFFGKEDV--DCTVIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT-KVNAEIYPIIVRAEARPADSSEAEANPTGNSQITMAVFEKKEEGGFPVQVIKQILWVNRMRYELQEIYGIGN-----TVAGDE--TEFGKKSVFCLSE 846
            H+   T+R+ VN++K++LR+   + D ++P +        + + FTFDA A  +IT+     E+      V + K   L+  T+ +++G+ Q+F  P    ID S + +  L   ++  ++P++++A     D  E     TG++ + +A FEK  +G F V+ +KQ   V+R+ Y LQEIYGI N     T   D+  ++   + V CLS+
Sbjct:   78 HEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLP-SFKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEV----TGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSD 284          
BLAST of DY304565 vs. ExPASy Swiss-Prot
Match: RN157_XENLA (RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 66/208 (31.73%), Postives = 105/208 (50.48%), Query Frame = 1
Query:  289 TIRNDVNVKKETLRVEPDEEN-----------PGQFLVAFTFDAAAPGSITVAFFGKEDVDCTVIA--TKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT-KVNAEIYPIIVRAEARPADSSEAEANPTGNSQITMAVFEKKEEGGFPVQVIKQILWVNRMRYELQEIYGIGN-------TVAGDE-TEFGKKSVFCLSE 846
            T+R+ +N++K+TLR+    E               + V FTFD  A  +IT+ +   E+    + +   K   L+  T+ F++G+ Q+F  P  T +D S + E  LT  ++ E+YP++V A     +         G+S + MA FEK  +G F V+ +KQ   V+ + Y LQEIYGI N        VA DE ++   + V CLS+
Sbjct:   83 TLRSLINIRKDTLRLVRCTEELKTTGVEGSRPKVHYNVEFTFDTDARVAITMYYQATEEFQGGIPSYLPKSSNLQSDTVHFKRGVSQQFCFPSHT-VDPSEWREEELTFDLDREVYPMVVHAVVEEGEEH------LGHSHVLMATFEKHADGSFCVKPLKQKQVVDGVSYLLQEIYGIENKYNSQDSKVAEDELSDNSAECVVCLSD 283          
BLAST of DY304565 vs. ExPASy Swiss-Prot
Match: RN157_HUMAN (RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 64/208 (30.77%), Postives = 108/208 (51.92%), Query Frame = 1
Query:  289 TIRNDVNVKKETLRV---EPDEENPGQ--------FLVAFTFDAAAPGSITVAFFGKEDVDCTVIA--TKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT-KVNAEIYPIIVRAEARPADSSEAEANPTGNSQITMAVFEKKEEGGFPVQVIKQILWVNRMRYELQEIYGIGN-------TVAGDE-TEFGKKSVFCLSE 846
            T+R+ VN++K+TLR+     + ++PG+        + V FTFD  A  +IT+ +   E+    + +   K+  L+  T+ +++G+ Q+F  P  T +D S + E  L   ++ E+YP++V A     D         G+  + +  FEK  +G F V+ +KQ   V+ + Y LQEIYGI N        VA DE ++   + V CLS+
Sbjct:   83 TLRSLVNIRKDTLRLVKCAEEVKSPGEEASKAKVHYNVEFTFDTDARVAITIYYQATEEFQNGIASYIPKDNSLQSETVQYKRGVCQQFCLPSHT-VDPSEWAEEELGFDLDREVYPLVVHAVVDEGDEY------FGHCHVLLGTFEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDEVSDNSAECVVCLSD 283          
BLAST of DY304565 vs. ExPASy Swiss-Prot
Match: RN157_MOUSE (RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 61/208 (29.33%), Postives = 103/208 (49.52%), Query Frame = 1
Query:  289 TIRNDVNVKKETLR-------VEPDEENPGQ----FLVAFTFDAAAPGSITVAFFGKEDVDCTVIA--TKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT-KVNAEIYPIIVRAEARPADSSEAEANPTGNSQITMAVFEKKEEGGFPVQVIKQILWVNRMRYELQEIYGIGN--------TVAGDETEFGKKSVFCLSE 846
            T+R+ +N++K+TLR       V+   E  G+    + V FTFD  A  +IT+ +   E+    + +   K+  L+  T+ +++G+ Q+F  P  T +D S + E  L   ++ E+YP++V A     D         G+  + +  FEK  +G F V+ +KQ   V+ + Y LQEIYGI N            D ++   + V CLS+
Sbjct:   83 TLRSLINIRKDTLRLVKCAEEVKSHGEEAGKAKVHYNVEFTFDTDARVAITIYYQATEEFQNGIASYIPKDNSLQSETVHYKRGVFQQFCLPSHT-VDPSEWAEEELGFDLDREVYPLVVHAVVDEGDEY------FGHCHVLLGTFEKHPDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDDVSDNSAECVVCLSD 283          
BLAST of DY304565 vs. ExPASy Swiss-Prot
Match: MGRN1_DANRE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 56/212 (26.42%), Postives = 105/212 (49.53%), Query Frame = 1
Query:  274 HQKAVTIRNDVNVKKETLRV-------EPDEENPGQ----FLVAFTFDAAAPGSITVAFFGKEDV--DCTVIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT-KVNAEIYPIIVRAEARPADSSEAEANPTGNSQITMAVFEKKEEGGFPVQVIKQILWVNRMRYELQEIYGIGN-------TVAGDETEFGKKSVFCLSE 846
            H+   T+R+ VN++K++LR+       +   E+ G     + V F FD  A  +IT+     E+      + + K   +   T+ +++G+ Q+F  P    ID + +    L   ++  ++P++V+A     D      + TG++ + +A FE+  +G F V+ +KQ   V+R+ Y LQEIYGI N       +   + ++   + V CLS+
Sbjct:   78 HEPVKTLRSLVNIRKDSLRLVRYKDDSDSTPEDTGDPRVLYSVEFCFDTDARVAITLYCQAFEEFANGMAIYSAKSPSMVSETVHYKRGINQQFSLP-SFKIDFTKWKPEELNFDLDKGVFPLVVQAIVDDGD------DVTGHAHVLLAAFERHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENRNNQETKSTEDENSDNSSECVVCLSD 282          
The following BLAST results are available for this feature:
BLAST of DY304565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MGRN1_RAT1.556e-1530.19Probable E3 ubiquitin-protein ligase MGRN1 OS=Ratt... [more]
MGRN1_MOUSE3.466e-1529.72Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus ... [more]
MGRN1_HUMAN5.912e-1529.72Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo... [more]
RN157_XENLA1.456e-1331.73RING finger protein 157 OS=Xenopus laevis GN=rnf15... [more]
RN157_HUMAN4.237e-1330.77RING finger protein 157 OS=Homo sapiens GN=RNF157 ... [more]
RN157_MOUSE4.684e-1229.33RING finger protein 157 OS=Mus musculus GN=Rnf157 ... [more]
MGRN1_DANRE1.780e-1126.42Probable E3 ubiquitin-protein ligase MGRN1 OS=Dani... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YA24RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304565 ID=DY304565; Name=DY304565; organism=Citrus clementina; type=EST; length=846bp
AAAATAATGGGTAATTCTGGAAGCCACAGGCGCCACCACAGCAACATCCC
ACCGCCGACACCGCCGCCGACGACCAGACAAACACAAAGCCAATACGTGT
TCGCCGCTGCTACGCCATACCCGTCTCAATACCCGAACCAATACTACCCT
CTTTACCCTGGATACTACCCTCCGCCTGTGCCCGTCCACGGGGCCTACGG
TTACCATCACATGCCGAGCGGGCATTACCCGGCGCACCCTCCGCCTCCCC
CGCCTCCGCCGCAGTATATGGAGCACCAGAAGGCGGTGACGATTAGAAAT
GATGTGAATGTGAAAAAAGAGACGCTTAGGGTTGAGCCTGACGAGGAGAA
TCCTGGGCAGTTTCTTGTTGCTTTCACTTTTGATGCCGCGGCGCCTGGAA
GTATTACTGTCGCATTTTTCGGTAAAGAAGATGTAGACTGTACTGTAATT
GCAACCAAAGAAGAACTGCTTAAACCAGTCACCATAACCTTCCAACAAGG
TCTTGGCCAGAAGTTTAGACAACCTTGTGGAACAGGGATTGACTTGTCAA
TGTTTGATGAGATAGCGTTAACTAAGGTGAATGCTGAAATTTATCCTATA
ATTGTGAGGGCTGAGGCACGCCCGGCAGATTCCAGCGAAGCAGAAGCAAA
TCCAACCGGGAATTCTCAAATTACTATGGCAGTGTTTGAAAAGAAAGAGG
AAGGTGGCTTCCCTGTACAGGTAATTAAGCAGATCTTGTGGGTGAACAGA
ATGAGGTATGAGCTTCAGGAAATTTACGGGATTGGGAATACAGTTGCTGG
GGATGAGACTGAATTTGGGAAAAAAAGTGTTTTCTGCTTGTCGGAA
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