DY304574

Overview
NameDY304574
Unique NameDY304574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length802
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROF3_HEVBR (Profilin-3 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.268e-37
Identity = 71/76 (93.42%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDGHHLT+AAI+GHDGSVWAQSS+FPQFKPEE+AAIMKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCDIDGHHLTAAAIIGHDGSVWAQSSSFPQFKPEEVAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROF_PYRCO (Profilin OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.621e-35
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDGHHLT+AAI+GHDGSVWAQSS FP+FKPEEI AIMKDF+EPGSLAPTGLHLGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDIDGHHLTAAAILGHDGSVWAQSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKK 87
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.729e-35
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+ DG HLT+AAI+GHDGSVWAQS+NFPQFKP EIAAIMKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCETDGQHLTAAAIIGHDGSVWAQSANFPQFKPAEIAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROF6_HEVBR (Profilin-6 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.729e-35
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROF5_HEVBR (Profilin-5 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.177e-35
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDGH LT+AAI+GHDGSVWAQSS FPQFK +E+AA+MKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCDIDGHRLTAAAIIGHDGSVWAQSSGFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROF1_MALDO (Profilin-1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.376e-34
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDGHHLT+AAI+GHDGSVWA SS FP+FKPEEI AIMKDF+EPGSLAPTGLHLGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDIDGHHLTAAAILGHDGSVWAHSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKK 87
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROF4_HEVBR (Profilin-4 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.797e-34
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AAIMKDF+EPGSLAPTGLHLG TKYMVIQGEPGAVIRGKK
Sbjct:   12 MCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAIMKDFDEPGSLAPTGLHLGSTKYMVIQGEPGAVIRGKK 87
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROFX_ORYSJ (Profilin LP04 OS=Oryza sativa subsp. japonica GN=Os06g0152100 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.521e-33
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+IDG+HLT+AAIVGHDGSVWAQS NFPQ+KPEEI  IMKDF+EPGSLAPTGL LGGTKYMVIQGEPG VIRGKK
Sbjct:   12 MCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKK 87
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROFX_ORYSI (Profilin LP04 OS=Oryza sativa subsp. indica GN=OsI_020954 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.521e-33
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+IDG+HLT+AAIVGHDGSVWAQS NFPQ+KPEEI  IMKDF+EPGSLAPTGL LGGTKYMVIQGEPG VIRGKK
Sbjct:   12 MCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKK 87
[Close]
BLAST of DY304574 vs. ExPASy Swiss-Prot
Match: PROF1_MAIZE (Profilin-1 OS=Zea mays GN=PRO1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.781e-33
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+GHHLTSAAIVGHDG+ WAQS+ FP+FKPEE+AAIMKDF+EPG LAPTGL LGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGHHLTSAAIVGHDGATWAQSTAFPEFKPEEMAAIMKDFDEPGHLAPTGLILGGTKYMVIQGEPGAVIRGKK 87
The following BLAST results are available for this feature:
BLAST of DY304574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF3_HEVBR2.268e-3793.42Profilin-3 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF_PYRCO3.621e-3590.79Profilin OS=Pyrus communis PE=1 SV=1[more]
PROF_LITCN4.729e-3589.47Profilin OS=Litchi chinensis PE=1 SV=1[more]
PROF6_HEVBR4.729e-3588.16Profilin-6 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF5_HEVBR6.177e-3588.16Profilin-5 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF1_MALDO1.376e-3489.47Profilin-1 OS=Malus domestica PE=1 SV=1[more]
PROF4_HEVBR1.797e-3488.16Profilin-4 OS=Hevea brasiliensis PE=1 SV=1[more]
PROFX_ORYSJ1.521e-3386.84Profilin LP04 OS=Oryza sativa subsp. japonica GN=O... [more]
PROFX_ORYSI1.521e-3386.84Profilin LP04 OS=Oryza sativa subsp. indica GN=OsI... [more]
PROF1_MAIZE5.781e-3385.53Profilin-1 OS=Zea mays GN=PRO1 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ9YB10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304574 ID=DY304574; Name=DY304574; organism=Citrus clementina; type=EST; length=802bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGTGATTTATTTCTCTCATAAT
ATTACTTTTTGCATTGATTCTATTACATTATGCGATAGCAGTTAAAATTT
GCAAGTTCTTTTCATGCTTATGATAAGACTTTCCTAATGAGGTTTGGTGT
GAGCATCATTATCATGATCAATGTCCCCCAAAGTTGTTTGAACTTTTGAA
TGTAAAGTTGTTATCCAAGGAATCTCTATCTTTCGTGCTGTCAAGGACTT
CAACTGCTCATCTGTAAGACTGTATATTTATGGATACAGACTTTTGAATG
AGGCATCTTCTCAAAAGAAGAATAATACAGCTTCATGGGTCTGATTGATG
GGTCCACCTCAAGGACTGCTTAATTGAGTTAGGTCTGATTTTGCACATTC
TTTATTGGTGATAGTTACTTATCGCTGTGGAACACAAGCCAATGGATGCC
AGATTGCTTCTCCTTTTACCTTTTATAATCTTTTTTGTAATATGAAAAAT
CCTATCTGTTGGTGGGTAACCTTAAACCCGCACCTAATAGTGCTCTAATT
TCCTTTTCTTTTGCCTTTGGAAAATGAAATATGGACCCCCATTCTGTTTC
GG
back to top