DY304588

Overview
NameDY304588
Unique NameDY304588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length945
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.379e-47
Identity = 95/246 (38.62%), Postives = 153/246 (62.20%), Query Frame = 3
Query:   36 KTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGVD 770
            K  IG+IG+GVMG +MAS +L+ G+ V VY RT  KA  +  +GA    +  D++K + V+ +MVG P DV  +    +GI+     GA  +D T+S P+LA++I + A+EK  +A+DAPVS GDIGA++G LAI   G+    +   P+F ++G+   + G AG GQ  K+ NQI + A ++G++E + +A K+GL+    + +I  GAA S ++     RM+  +F PG + ++ +KDMG+ ++
Sbjct:    2 KKTIGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEPENVLKSITTGAAGSWSLSNLAPRMLQGNFEPGFYVKHFIKDMGIALE 247          
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.972e-37
Identity = 92/245 (37.55%), Postives = 135/245 (55.10%), Query Frame = 3
Query:   42 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQ-LQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGVD 770
            ++ +IG+GVMG  MA  L+  G+ VTVY RT +KA Q ++  G   A +P D A+   +VF+ VG   D+R + L   GIV G++ GA+ VD T++   +AREI       +   +DAPVS G  GA +G L +   GD A    + P+     +    +G  G GQ  K+ NQI +   + GL+EGL FA  AGLD  K ++ I  GAA+S  ME   + M    +  G   ++M KD+G+ +D
Sbjct:    3 KVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIVFTCVGNDDDLRQVVLGEHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAGVVQGLAEGLHFAKSAGLDGLKVIEVISKGAAQSWQMENRYKTMWQGQYDFGFAIDWMRKDLGIALD 247          
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.481e-37
Identity = 92/243 (37.86%), Postives = 133/243 (54.73%), Query Frame = 3
Query:   42 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGV 767
            ++G+IG+G+MG  MA  L  AG+ + V       A +L S GA    +   V ++S ++F MV     V  +    +G       G   VD +S  P   +   +   E     +DAPVS G+IGAR+G L+I   GD AV + + PLFE+LGK  T +G  G GQ+CK+ANQI+V  N+  +SE L+FA KAG D  +   A+ GG A S  +E++GERMI + F PG       KD+ + +
Sbjct:    2 KLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLAL 243          
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.078e-35
Identity = 81/244 (33.20%), Postives = 132/244 (54.10%), Query Frame = 3
Query:   42 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL-GKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGVD 770
            ++G+IG+G+MG  M+  LL AGYS+ V  R       + + GA  A++   +A+   V+ +M+     V+ +AL  +GI+ G  PG V +D +S  P  +REI +  + K    +DAPVS G+  A DG L++   GD A+      L + + G     GE G G   K+ANQ++V  N+  +SE L  A KAG++      AI+GG A S  ++     ++ ++F+PG   +  +KD+   +D
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALD 245          
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.078e-35
Identity = 81/244 (33.20%), Postives = 132/244 (54.10%), Query Frame = 3
Query:   42 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL-GKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGVD 770
            ++G+IG+G+MG  M+  LL AGYS+ V  R       + + GA  A++   +A+   V+ +M+     V+ +AL  +GI+ G  PG V +D +S  P  +REI +  + K    +DAPVS G+  A DG L++   GD A+      L + + G     GE G G   K+ANQ++V  N+  +SE L  A KAG++      AI+GG A S  ++     ++ ++F+PG   +  +KD+   +D
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALD 245          
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.073e-31
Identity = 76/250 (30.40%), Postives = 134/250 (53.60%), Query Frame = 3
Query:   24 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM--GEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGV 767
            ITP+  RIG++G+G+MG+ + S LL  G+ VTV+ RT+ K      +GA L  +P +V     + FS V  P+  R + L P G++ G+ PG  YV+ ++  P    E+ +V   +    ++APVS     + DG L I AAGD +V +  +  F+ +GK +F   GEAG      +   +V G+ +  ++EGL  A   G   + ++D +  G   S  ++   + ++  +F+P  + +++ KD+ + +
Sbjct:  171 ITPTDKRIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSFMATIAEGLTLAQATGQSQQTFLDILCQGQMASTFVDQKCQNILQGNFKPDYYLKHIQKDLRLAI 420          
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.324e-31
Identity = 72/249 (28.92%), Postives = 134/249 (53.82%), Query Frame = 3
Query:   24 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGV 767
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVS     + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D +  G   S+ ++   + ++  +F+P  + +Y+ KD+ + +
Sbjct:  262 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAI 510          
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.324e-31
Identity = 72/249 (28.92%), Postives = 134/249 (53.82%), Query Frame = 3
Query:   24 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGV 767
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVS     + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D +  G   S+ ++   + ++  +F+P  + +Y+ KD+ + +
Sbjct:  263 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAI 511          
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 6.954e-31
Identity = 72/249 (28.92%), Postives = 134/249 (53.82%), Query Frame = 3
Query:   24 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGV 767
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVS     + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D +  G   S+ ++   + ++  +F+P  + +Y+ KD+ + +
Sbjct:  263 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAI 511          
BLAST of DY304588 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.954e-31
Identity = 71/249 (28.51%), Postives = 134/249 (53.82%), Query Frame = 3
Query:   24 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSRGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIQGGAARSMAMELYGERMI*KDFRPGGFAEYMVKDMGMGV 767
            +TP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVS     + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D +  G   S+ ++   + ++  +F+P  + +Y+ KD+ + +
Sbjct:  263 VTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAI 511          
The following BLAST results are available for this feature:
BLAST of DY304588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
YKWC_BACSU2.379e-4738.62Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
Y1503_SHEFN4.972e-3737.55Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
GLXR_ECOLI8.481e-3737.862-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOLI6.078e-3533.202-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL66.078e-3533.202-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GLYR1_DANRE1.073e-3130.40Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_RAT5.324e-3128.92Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_CHICK5.324e-3128.92Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_HUMAN6.954e-3128.92Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_BOVIN6.954e-3128.51Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YC02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304588 ID=DY304588; Name=DY304588; organism=Citrus clementina; type=EST; length=945bp
TGGAAACTCCTTATCCAAAGCCCATTACTCCCAGCAAGACCCGCATCGGC
TGGATCGGGATCGGCGTAATGGGCAACGCCATGGCTTCCCGCCTTCTCTC
CGCCGGCTACTCCGTCACCGTCTACGCTCGCACCTCATCAAAAGCCCTTC
AGCTCCAATCACAAGGCGCCACTCTCGCCGCTTCACCGTTCGACGTCGCC
AAATCAAGCGGCGTTGTCTTCTCCATGGTGGGCACCCCACAAGACGTTCG
ATCAATTGCCCTCGATCCCGACGGCATCGTTTCTGGCCTCAACCCCGGCG
CCGTCTACGTTGACACCACGAGCAGTCACCCTGCCCTCGCGCGGGAAATA
TTCAAAGTCGCAAGAGAGAAAGATTGCTGGGCTGTTGACGCACCCGTATC
CCGAGGCGACATTGGCGCCCGAGATGGGAAATTAGCTATATTTGCTGCTG
GTGATAGTGCTGTTGTGCAGTGGCTGACTCCGTTGTTTGAGGTTCTGGGG
AAGCCTACGTTTATGGGCGAGGCGGGTTGTGGGCAAAGCTGTAAAATTGC
GAATCAGATTGTGGTGGGAGCAAACTTGTTGGGACTGAGTGAAGGTTTGG
TGTTTGCTGATAAAGCGGGGTTGGATGTGAGAAAATGGATGGATGCTATA
CAGGGAGGTGCAGCGCGATCAATGGCCATGGAGTTGTATGGGGAGAGAAT
GATATAGAAGGACTTTAGGCCTGGCGGGTTTGCTGAGTATATGGTGAAAG
ACATGGGAATGGGTGTTGATTTTGTTTAGGAAAGTGAGTAAGATATTATC
GGTTGTGATGCCCCGGTCTCCCTTTGAACATAACCGTTTTTATCGGCCTT
TGTTGGGCAAAAGGTCATTGGTTACCTGAGCCCTACAAGGGGTTTGTATC
CGTTAATTGGAAGAATCACATGTAAAATAATTTTTTTATGTTGCA
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