DY304590

Overview
NameDY304590
Unique NameDY304590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length948
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 344.354 bits (882), Expect = 5.808e-94
Identity = 159/185 (85.95%), Postives = 175/185 (94.59%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LGRSGLRVSQL+YGAWV+FGNQLDVKEAK+LLQ CRD GVNFFDNAEVYANGRAEEIMGQA+R+LGW+RSD+VVSTK+FWGGQGPNDKGLSRKHIVEG + SLKRLDMDYVDV+YCHRPD +TP+EETVRAMN+VID G AFYWGTSEWSAQQITEAW +A RLDLVGPIVEQPEYN+ SRHKV
Sbjct:    5 NLGRSGLRVSQLSYGAWVTFGNQLDVKEAKALLQACRDAGVNFFDNAEVYANGRAEEIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCHRPDATTPVEETVRAMNWVIDHGMAFYWGTSEWSAQQITEAWSVANRLDLVGPIVEQPEYNLFSRHKV 189          
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.645e-59
Identity = 102/185 (55.14%), Postives = 142/185 (76.76%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL +DYVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY+M  R KV
Sbjct:   41 NLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKV 225          
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.351e-58
Identity = 101/185 (54.59%), Postives = 142/185 (76.76%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY+M  R KV
Sbjct:   41 NLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKV 225          
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.765e-58
Identity = 101/185 (54.59%), Postives = 142/185 (76.76%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY+M  R KV
Sbjct:   41 NLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKV 225          
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.765e-58
Identity = 101/185 (54.59%), Postives = 142/185 (76.76%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY+M  R KV
Sbjct:   41 NLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKV 225          
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 3.011e-58
Identity = 101/185 (54.59%), Postives = 141/185 (76.22%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L  PI EQ EY+M  R KV
Sbjct:   41 NLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKV 225          
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.158e-56
Identity = 96/185 (51.89%), Postives = 140/185 (75.68%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  +++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG +ASL+RL ++YVDV++ +RPD +TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +L+ P+ EQ EY++  R KV
Sbjct:   75 NLGKSGLRVSCLGLGTWVTFGGQISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKV 259          
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.818e-56
Identity = 96/185 (51.89%), Postives = 140/185 (75.68%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R KV
Sbjct:   75 NLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKV 259          
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.818e-56
Identity = 96/185 (51.89%), Postives = 140/185 (75.68%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R KV
Sbjct:   93 NLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKV 277          
BLAST of DY304590 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.818e-56
Identity = 96/185 (51.89%), Postives = 140/185 (75.68%), Query Frame = 2
Query:  107 HLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 661
            +LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R KV
Sbjct:   82 NLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKV 266          
The following BLAST results are available for this feature:
BLAST of DY304590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
KCAB_ORYSJ5.808e-9485.95Probable voltage-gated potassium channel subunit b... [more]
KCAB2_XENLA4.645e-5955.14Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN1.351e-5854.59Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT1.765e-5854.59Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE1.765e-5854.59Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_HUMAN3.011e-5854.59Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_CHICK2.158e-5651.89Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RAT2.818e-5651.89Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RABIT2.818e-5651.89Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU2.818e-5651.89Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YC04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304590 ID=DY304590; Name=DY304590; organism=Citrus clementina; type=EST; length=948bp
CACTCTCTCAGTCACAGTTTCCAGATTTTCTCGTACACTTCCCCAACAGG
CCAAAAAAACAGACAACAAAAAGGTTAAAAAAGGAAATTACAAAATGCAA
TACAAGCACCTGGGGAGATCGGGGCTGAGAGTGAGCCAGCTCGCGTACGG
AGCGTGGGTCAGCTTCGGGAACCAGCTGGACGTGAAGGAGGCGAAGTCGC
TCTTGCAATGCTGCCGCGACCACGGCGTCAACTTCTTCGACAATGCCGAG
GTCTACGCCAACGGCCGCGCGGAAGAGATCATGGGCCAGGCCATTCGCGA
GCTCGGGTGGAAGCGATCCGACATCGTCGTTTCCACCAAGATCTTTTGGG
GCGGCCAGGGCCCCAACGATAAAGGCCTCTCCAGAAAACACATTGTCGAG
GGCACCAAAGCTTCCTTGAAACGCCTCGACATGGATTACGTCGACGTTAT
TTATTGTCACAGGCCGGACACGTCGACACCGATAGAGGAGACGGTGAGGG
CGATGAATTATGTGATTGATAAGGGGTGGGCGTTTTACTGGGGAACAAGT
GAGTGGTCGGCGCAGCAGATCACCGAGGCTTGGGGGATTGCTGAGCGCTT
GGATTTGGTGGGCCCCATTGTTGAGCAACCAGAGTATAACATGTTGTCTA
GGCACAAGGTTTCGTATTAGTTCTTTATCATTGTTGTTGTGTTTTTGTAG
ATTTTGAGGTTGTTGTTGTTGTGTTTTCCTTGTTACCAAATTTAAACTGA
AGTAAACCCGTAAAAATTGAATGGTGAAAACGTGAAAAAAGGGATAAATA
TAACTTGAAAGTGGGAAGGGTAATGGGCAATGACCTTATTTACTCCTAAA
ATTCTAAATTTCCAAACTGCTTTATGGAAAAGTAATTAAAAAACACCCTG
AAACCTGTTTTATGGGTGGACCCGGCAAAAATATCCCAAAAAAACCCG
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