DY304593

Overview
NameDY304593
Unique NameDY304593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304593 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.124e-75
Identity = 138/208 (66.35%), Postives = 166/208 (79.81%), Query Frame = 3
Query:   30 LLMFIFPLQLTASMQLQGNNA--THSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATEST---QHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRL 638
            L +F   L  +A+  L  N +  + SGQINSNSVLVALLDS YTEL+ELVEKALLLQ LEDAVG+H+ITIFAP+NEALERDLDPEFKRFLLEPGNLKSLQTLL+ HI+  R+  N+  +E +   +HHTL +D V L S+  G K +  +++I P+ + RPDG+IHGIERLLIPRSVQ+DFN RR+L+SISAV PEGAPEVDPRTNRL
Sbjct:   14 LFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRL-SNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRL 220          

HSP 2 Score: 45.8246 bits (107), Expect = 1.124e-75
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 2
Query:  740 GPGRPHHHFNGKKQLKEFIQTLLTYRGYNKWA 835
            GPG   HHF+G+ Q+K+FI TLL Y GYN+ A
Sbjct:  254 GPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMA 285          
BLAST of DY304593 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.278e-73
Identity = 137/213 (64.32%), Postives = 163/213 (76.53%), Query Frame = 3
Query:   21 SFLLLMFIFPLQLTASMQLQGN-NATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATEST---QHHTLSSDSVELTSH---DSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRL 638
            S + + F F   L AS    G+ N T SGQINSNSVLVALLDS YTEL+ELVEKALLLQ LEDAVG+H+ITIFAP+NEALERDLDP+FKRFLL+PGNLKSLQTLLL HI+  R+  N+   E++   +H TL  D V   S     +G + ++ + +  P+ + RPDG+IHGIERLLIPRSVQ+DFN RRNLRSISAV PEGAPE+DPRTNRL
Sbjct:    9 SVITIFFSFFFLLNASALESGHHNITGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRL 221          

HSP 2 Score: 46.595 bits (109), Expect = 2.278e-73
Identity = 20/32 (62.50%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  740 GPGRPHHHFNGKKQLKEFIQTLLTYRGYNKWA 835
            GPG  H HFNG  Q+K+FI TLL Y GYN+ A
Sbjct:  257 GPGGAHKHFNGDAQVKDFIHTLLHYGGYNEMA 288          
BLAST of DY304593 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.037e-70
Identity = 133/205 (64.88%), Postives = 158/205 (77.07%), Query Frame = 3
Query:   24 FLLLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRL 638
            FLLL+F+     TA      +N    GQINSNSVLVALLDSHYTEL+ELVEKALLLQ LE+AVGKH+ITIFAP+N+ALER+LDP FK FLLEP NLKSLQ+LL+ HI+  RI   +  + S  H TLS+D + LT  D     +  +++I P+ V RPDG+IHGIERLLIPRSVQ+DFN RR+LRSISAV PEGAPEVDPRT+RL
Sbjct:   10 FLLLLFLTTSIATALP----DNKPVPGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWPSLSHHHRTLSNDHLHLTV-DVNTLKVDSAEIIRPDDVIRPDGIIHGIERLLIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRL 209          

HSP 2 Score: 46.2098 bits (108), Expect = 5.037e-70
Identity = 20/32 (62.50%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  740 GPGRPHHHFNGKKQLKEFIQTLLTYRGYNKWA 835
            GPG P  HFNG  Q+K+FI TLL Y GYN+ A
Sbjct:  243 GPGGPRGHFNGDAQVKDFIHTLLHYGGYNEMA 274          
BLAST of DY304593 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 8.567e-70
Identity = 124/203 (61.08%), Postives = 157/203 (77.34%), Query Frame = 3
Query:   30 LLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRL 638
            L   +F L LT S+     +   SGQINSNSVLVALLDSHYTEL+ELVEKALLLQ LE+AVG+H+ITIFAP+N+ALE++LDPEFK FLL+P NLKSLQ+LL+ HI+  RI   + ++    H TLS+D +  T+       ++ +++  P+ + RPDG+IHGIERLLIPRSVQ+DFN RR+LRSI+AV PEGAPEVDPRT+RL
Sbjct:    4 LSKLLFFLLLTISITTALPDKPGSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITSPQFSSAVVSHRTLSNDHLHFTNGK-----VNSAEITKPDDLTRPDGIIHGIERLLIPRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRL 201          

HSP 2 Score: 50.8322 bits (120), Expect = 8.567e-70
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2
Query:  740 GPGRPHHHFNGKKQLKEFIQTLLTYRGYNKWA 835
            GPG P HHFNG+ Q+K+FI TLL Y GYN+ A
Sbjct:  235 GPGGPRHHFNGEAQVKDFIHTLLHYGGYNEMA 266          
The following BLAST results are available for this feature:
BLAST of DY304593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA17_ARATH1.124e-7566.35Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA18_ARATH2.278e-7364.32Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA16_ARATH5.037e-7064.88Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA15_ARATH8.567e-7061.08Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YC09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304593 ID=DY304593; Name=DY304593; organism=Citrus clementina; type=EST; length=919bp
CCGAAACTCGGAAACTCATTTCATTTCTTCTTTTAATGTTTATATTCCCT
CTCCAACTCACGGCTTCAATGCAATTGCAAGGAAACAACGCAACTCACTC
TGGCCAAATCAACTCCAACTCAGTCCTGGTCGCACTTCTCGACTCGCATT
ACACCGAACTCTCTGAGCTCGTCGAGAAAGCTCTCCTCTTGCAGCCACTC
GAAGATGCTGTCGGCAAGCACAGCATCACCATTTTCGCTCCCAAAAATGA
AGCTTTGGAGCGGGATCTCGATCCCGAGTTCAAGCGCTTCTTGCTCGAGC
CAGGCAACTTGAAGTCTCTTCAGACGCTTTTGCTTCATCACATTGTCTCC
ACGCGAATAGAGTTAAACCGGACTGCCACCGAGTCAACTCAGCATCATAC
ACTGTCCAGTGATTCAGTCGAGCTAACGAGTCATGATTCGGGTGATAAAT
TTATAAGTCAATCCAAGGTCATTCATCCGAACGCCGTGGACCGTCCAGAT
GGAGTCATCCACGGCATCGAACGGCTGCTAATCCCTCGATCCGTACAGCA
AGATTTCAACAACCGAAGGAATCTCCGTTCAATCTCAGCCGTTAGACCGG
AAGGAGCACCAGAGGTCGACCCGAGGACAAACCGGTTGAAGAAACCGACA
CCAACCTCCAAACCCGGCTCATCTCCAGCCCCTTCCGGTTTAACTACGCA
TGGCTCCCGGTTCCTTAATTAGCTCCCGCCCCGGCACAAGGGCCGGGCCG
GCCGCACCACCACTTTAACGGAAAAAAACAATTAAAAGAATTCATCCAAA
CGCTTTTAACCTACCGCGGGTACAACAAATGGGCAAAATTTAATGGAACC
AACCTCCCCTGCAAAGGAAATTGGGGGGTCTGGGTTCGAAAGAAAATTAT
TTATGCTTTTGACCCCAAA
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