DY304598

Overview
NameDY304598
Unique NameDY304598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length973
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304598 vs. ExPASy Swiss-Prot
Match: ESF2_CHAGB (Pre-rRNA-processing protein ESF2 OS=Chaetomium globosum GN=ESF2 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.789e-14
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  319 SNVEEIGEADMIGKEKEVNLMEEGKQEE---LNEXXXXXXXXXXXQRLLEEAAKADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRDNPKRDGGFQDQGFSKRWVEFTKKGVGKRV 708
            +N+ E G AD      +  + EEG +++   L             + L+   A   + G+ YLSRIPP M P KLR +L  YG+I RI+L PEDP+    R      R+GG + + F++ WVEF KK   K+V
Sbjct:   64 TNLRE-GTADSEAARDDEEIAEEGPKDDKADLPAELPGVSKPLAKKNLVASEAAIKKSGVVYLSRIPPFMKPAKLRSLLEPYGKINRIFLTPEDPTEHTRR-----VRNGGNKKRSFTEGWVEFVKKKDAKKV 190          
BLAST of DY304598 vs. ExPASy Swiss-Prot
Match: ESF2_CANAL (Pre-rRNA-processing protein ESF2 OS=Candida albicans GN=ESF2 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.758e-14
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  445 QRLLEEAAKADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRDNPKRDGGFQDQGFSKRWVEFTKKGVGK 702
            + L +E  +  + G+CYLSR+PP+M P KLR +LS++GEI R++L PEDPS  V  KR    + GG + + F++ W+EF  K   K
Sbjct:  111 KELAKEQKRIKRTGVCYLSRVPPYMKPAKLRSVLSRFGEIDRLFLKPEDPS--VYHKR---VKYGGNKKKNFTEGWIEFVNKSDAK 191          
BLAST of DY304598 vs. ExPASy Swiss-Prot
Match: ESF2_NEUCR (Pre-rRNA-processing protein esf-2 OS=Neurospora crassa GN=esf-2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.214e-14
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  337 GEADMIGKEKEVNLMEEGKQEELNEXXXXXXXXXXXQRLLEEAAKADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRDNPKRDGGFQDQGFSKRWVEFTKKGVGKR 705
            G+    GKEK+    E+ K+  L             + L+       + G+ Y+SR+PP M P KLR +L  YG++ RI+LAPEDP  R  RKR    R GG + + F++ W+EF KK   K+
Sbjct:   75 GQETTDGKEKKDGKKEKEKKSVLASDLPGMTKPLTKKNLIVTEEAIKKSGVVYISRVPPFMTPAKLRSLLEPYGKLNRIFLAPEDPVAR--RKR---IRSGGNKKKMFTEGWIEFVKKKDAKK 192          
BLAST of DY304598 vs. ExPASy Swiss-Prot
Match: ESF2_GIBZE (Pre-rRNA-processing protein ESF2 OS=Gibberella zeae GN=ESF2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.808e-13
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  445 QRLLEEAAKADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRDNPKRDGGFQDQGFSKRWVEFTKKGVGKRV 708
            + L+   A   + G+ YLSRIPP M P KLR +L  YG I RI+LAPEDP++   R      R GG + + +++ WVEFTKK   K V
Sbjct:  105 KNLVASEAAIKKSGVVYLSRIPPFMKPAKLRSLLEPYGTINRIFLAPEDPASHARR-----VRAGGNKKRSYTEGWVEFTKKKDAKAV 187          
BLAST of DY304598 vs. ExPASy Swiss-Prot
Match: ESF2_DEBHA (Pre-rRNA-processing protein ESF2 OS=Debaryomyces hansenii GN=ESF2 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.261e-13
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  292 ASRVENNLKSNVEEIGEADMIGKEKEV----NLMEEGKQEELNEXXXXXXXXXXXQRLLEEAAKADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRDNPKRDGGFQDQGFSKRWVEFTKK 690
            AS ++N    N E   E D+  ++ ++    ++++E   E   +           ++L +E  K  + G+CYLS+IPP+M P KLR +LS++G+I R++L PED ST   R      + GG + + ++  WVEF  K
Sbjct:   30 ASHIDNF--KNEESEDEEDLNEEDDDLFMNTDIIDEETIENSKQAKNINLKKLTPEQLAKEQKKIKKTGVCYLSKIPPYMKPAKLRSVLSRFGKIDRLFLKPEDNSTYTKR-----VKYGGNKKKNYTAGWVEFINK 159          
BLAST of DY304598 vs. ExPASy Swiss-Prot
Match: ESF2_PICST (Pre-rRNA-processing protein ESF2 OS=Pichia stipitis GN=ESF2 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.871e-13
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  292 ASRVENNLKSNVEEIGEADMIGKEKEVNLMEEGKQEELNEXXXXXXXXXXXQRLLEEAAKADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRDNPKRDGGFQDQGFSKRWVEFTKK 690
            A   EN  +  V++  + D +        +E G  +  +E           ++L +E  +  + G+CYLSRIPP+M P  LR ILS++G+I R++L PED  + +  KR    + GG + + F++ WVEF  K
Sbjct:   82 ADNFENENEEEVDDYIDGDGMRNFDMGESIEVGDVDSTSERKNGKIKKLTSRQLQKEQKRIKRTGVCYLSRIPPYMKPATLRSILSRFGKIDRLFLKPED--SAIYHKR---VKYGGNKKKNFTEGWVEFVNK 209          
BLAST of DY304598 vs. ExPASy Swiss-Prot
Match: ESF2_SCHPO (Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe GN=esf2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.973e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  454 LEEAAKADQR-GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRDNPKRDGGFQDQGFSKRWVEFTKKGVGKRV 708
            +E+  KA +R G+ YLSRIPP+M P KLRQILSQYG+I R+YL PE  + R  R      R+GG +   + + W+EF  K V K V
Sbjct:  111 VEKQRKAIKRSGVIYLSRIPPYMAPNKLRQILSQYGKIGRVYLTPESSAKRAQR-----LRNGGNKRVMYEEGWIEFESKRVAKSV 191          
BLAST of DY304598 vs. ExPASy Swiss-Prot
Match: ESF2_YARLI (Pre-rRNA-processing protein ESF2 OS=Yarrowia lipolytica GN=ESF2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.921e-12
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 1
Query:  316 KSNVEEIGEADMIGKEKEVNLMEEGKQEELNEXXXXXXXXXXXQRLL--EEAAKADQR----GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRDNPKRDGGFQDQGFSKRWVEFTKKGVGK 702
            K   E  G+ D    E+E    EE ++EE  +            + +  EE  K +++    G+ Y SRIPP MDP KLR +L ++G + RIYL PEDP  + +R      R GG +   +++ W EFTKK   K
Sbjct:   64 KDFFELAGKTDDGDDEEEDEEDEEEEEEEKEKKPVKTSSTKAKTKPMTKEEIEKHNKKIAKTGVVYFSRIPPLMDPGKLRMLLQRFGIVDRIYLVPEDPKAQAVR-----IRHGGNRALAYTEGWAEFTKKRYAK 193          
The following BLAST results are available for this feature:
BLAST of DY304598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ESF2_CHAGB2.789e-1436.09Pre-rRNA-processing protein ESF2 OS=Chaetomium glo... [more]
ESF2_CANAL4.758e-1444.19Pre-rRNA-processing protein ESF2 OS=Candida albica... [more]
ESF2_NEUCR6.214e-1436.59Pre-rRNA-processing protein esf-2 OS=Neurospora cr... [more]
ESF2_GIBZE1.808e-1345.45Pre-rRNA-processing protein ESF2 OS=Gibberella zea... [more]
ESF2_DEBHA5.261e-1332.12Pre-rRNA-processing protein ESF2 OS=Debaryomyces h... [more]
ESF2_PICST6.871e-1332.33Pre-rRNA-processing protein ESF2 OS=Pichia stipiti... [more]
ESF2_SCHPO8.973e-1348.84Pre-rRNA-processing protein esf2 OS=Schizosaccharo... [more]
ESF2_YARLI9.921e-1234.81Pre-rRNA-processing protein ESF2 OS=Yarrowia lipol... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YC14RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304598 ID=DY304598; Name=DY304598; organism=Citrus clementina; type=EST; length=973bp
CCCTTCTCTCGCAAAAATTGTAACACTGGGACCGAGCAGCCGGCGCTTTT
AAACGTAACCACCATTGCTGCGAGCCAGTCACTCCGCCGCCACGGGTTCG
TGTTCCTGCTGCTCGCTCGCGTGACTCGTTTCCACTCATCAATTTCTGTT
GCTTTCTTTAAATCCTAAAACAAACTAATGGGTGAGAAGGGAAATCCAAA
ATCATGTGAAAGGAGTGAGAGAAAGCAGAGGAAGAAAAAGGAAAATTTTT
TTGTTAAGGAGACTGGGAAGACCGATGAAGAAGAAGAAGAAGCAAGTCGA
GTAGAAAATAATCTAAAATCTAATGTTGAGGAAATAGGGGAAGCTGACAT
GATTGGGAAAGAAAAAGAGGTGAATTTAATGGAGGAAGGGAAGCAGGAGG
AATTAAATGAAAAAAATTCAAAACATAGTAAAAGTAAAAAGAAGCAGCGC
TTATTAGAGGAAGCTGCTAAAGCTGATCAGCGTGGGATTTGCTACTTGAG
TCGGATTCCTCCCCATATGGATCCTGTGAAGCTGCGTCAGATCCTCTCTC
AGTATGGAGAAATACAACGGATTTATCTTGCCCCTGAAGATCCTTCCACC
AGAGTACTTCGTAAACGAGATAATCCTAAGCGAGATGGTGGGTTTCAAGA
TCAAGGATTTTCAAAAAGGTGGGTTGAGTTCACAAAGAAAGGTGTTGGAA
AGAGGGTTCCCAAAAATGCCAAAAGGTAAACCTTTTGGAGGCAAAAATAA
GGACCTCCATTGTAATATGATCTTTGGAAAAAGCAGTAGTCAATTCAAAT
TCAAAAGCCGAAAGTTCTAACCGCAGAAATTTGCCTAAAACAATCGAACA
TCCGAAAAAATTAACAAATAACCCTTCAAAATTTTATAGCTGCGATAAAA
AGGGCCAAGAATTCTAACAAATTTTAGAGGTGAGGGAAGTCCCGACCGAT
TTGGGTAAAACAAATGAAACAAA
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