DY304602

Overview
NameDY304602
Unique NameDY304602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 421.394 bits (1082), Expect = 3.720e-117
Identity = 219/274 (79.93%), Postives = 244/274 (89.05%), Query Frame = 2
Query:  113 MAMAALRREGRRFAT-PLISPCPIAAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL*NLADFQFPCVMFNGVLEKGC 925
            MAMAALRREGRR A  P  SP P+ A+RS  +S  EE    GVRSISTQ+VRNRMKSVKNIQKITKAMKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA LVRDSKKDIELIITELQKNPLNYTQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKL +LDSYEIEG E+K E+L NL +FQF  V+FN VLE  C
Sbjct:    1 MAMAALRREGRRLAAAPFTSPTPLNALRSSLVSPSEEIGLSGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDSYEIEGAESKSEVLQNLTEFQFSSVLFNAVLENAC 274          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 1.120e-113
Identity = 209/272 (76.84%), Postives = 241/272 (88.60%), Query Frame = 2
Query:  113 MAMAALRREGRRFATPLISPCPIAAIRSPFLSE-EDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL*NLADFQFPCVMFNGVLEKGC 925
            MAMA  RREGRR   P I+  PIAAIRSP  S+ E+  LGVRSISTQ+VRNRMKSVKNIQKITKAMKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ RDSK DI L +TEL KNPLNY QVSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKL ELDSYEIEGGETKGEIL NLA+FQF CVMFN VLE  C
Sbjct:    1 MAMAVFRREGRRLL-PSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENAC 271          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.006e-21
Identity = 76/250 (30.40%), Postives = 132/250 (52.80%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRD--SKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL-*NLADFQFPCVMFNGVLEKGCR 928
            S + ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A++                 + T   K  +++ ++S++GLCGG N+   K++++  +   G  K+ K + +G+K +  L RD  S     + +TE+++  ++Y     +A D+L      EFD   I Y+KF +VVS +PT   ++  +  ++E E    L +   YE +      ++L   +A   F  ++ NG  E+G R
Sbjct:    3 SLKDLKNRIESVKSTRKITKAMQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDVGEFDVATIFYAKFVNVVSQIPTAQQIIPAKFEQQEGEEASTLFD---YEPDEEAILADLLPRGVATQIFSALLENGASEQGAR 247          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 7.213e-20
Identity = 70/203 (34.48%), Postives = 115/203 (56.65%), Query Frame = 2
Query:  230 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDS 823
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL    D  T  D KK++I+ +SSD+GLCG I+S+  K  KS     +   KE K + +G+K ++IL R       +   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S + +   AES     ++D+
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTIS-SAESMSIYDDIDA 223          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_DINSH (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.230e-19
Identity = 74/244 (30.33%), Postives = 128/244 (52.46%), Query Frame = 2
Query:  254 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-------GDTP--------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL-*NLADFQFPCVMFNGVLEKGCR 928
            ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A+L       GD+         T   + +++V +++++GLCGG NS+  K++++  +      K  K + +G+K +  L RD  K     +   +   ++Y   + +A D+L      EFD   I +++F SV+S +PT   ++ P   E +A++   L +   YE        ++L   +A   F  ++ NG  E+G R
Sbjct:    7 LKNRIESVKSTRKITKAMQMVAAAKLRRAQDAAEASRPYTERFNAVLAGLAASVGDSDSGPRLLVGTGSDQTHLLVVMTAERGLCGGFNSSIAKLARAHAEKLVAQGKTVKILTVGKKGREQLKRDLSKHFIGHVDLSEVKRVSYDNAADIAADVLGRFDAGEFDVATIFFNRFQSVISQIPTAQQII-PASFEGDADADATLYD---YEPSEEAILADLLPRGVATQIFAALLENGASEQGAR 246          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.099e-19
Identity = 74/248 (29.84%), Postives = 122/248 (49.19%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG----------DTPTVDA-----KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL-*NLADFQFPCVMFNGVLEKGCR 928
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN+R   +   A+LG          +TP + A     + +++V  ++++GLCG  NS+  ++++   +      K  K + +G+K   IL R+ +  I  +I       L +     + +++L      EFD   + YS+F SV++ +PT   ++  E+    A    +      YE E GE    +L  NL       ++ N   E+G R
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLAGTGADRVHLLVVCTAERGLCGAFNSSIARLARDHARRLVAEGKTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFENAEAVTENLLNRFEAGEFDIATLFYSRFRSVIAQVPTAQQIIPAEI--SPASESAQTDAAYEYEPEEGEILAALLPKNLTVQILRALLENAASEQGAR 248          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_PELUB (ATP synthase gamma chain OS=Pelagibacter ubique GN=atpG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.741e-19
Identity = 74/239 (30.96%), Postives = 114/239 (47.70%), Query Frame = 2
Query:  254 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL*NLADFQFPCVMFNGVLE 916
            ++ R+ SVK+ QKITKAMKMVAA+KLR  Q  AE  R   +    ++ +               + T + K ++ + ++SD+GLCGG N+  +K +K+  +  S   K  K + +G K    L R  K  I   I+      +NY     +   I++N    EFD   I Y+KF +V++ +P    ++  +  E E  S       D+YE E  E   EIL NL        +F  +LE
Sbjct:    7 LKKRIASVKSTQKITKAMKMVAAAKLRRAQENAEKGRPYSEKMNNIILNLSSGISDKENAPKLLSGTGEDKVHLCIVLTSDRGLCGGFNTNIIKKAKTYFQKISDEGKTLKIITVGSKGYDQLKRVYKDAIVERISFKDSKTINYLDAEKVGKMIIENFEKEEFDVCTIFYNKFKNVITQIPQEQQIIPLKTSEAEENSSE-----DNYEFEPDE--DEILSNLLPKNISTQIFKAMLE 238          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_METS4 (ATP synthase gamma chain OS=Methylobacterium sp. (strain 4-46) GN=atpG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.106e-19
Identity = 69/226 (30.53%), Postives = 117/226 (51.77%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-----TPTVDAKK----------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELD-SYEIEGGETKGEIL 862
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN+R   +   A+LG+     TP  +  +          ++++  ++++GLCG  NS+  ++++   +  +   +  K + +G+K   IL R+ +  I  +I       L +     +A ++L      EFD   + YS+F SV+  +PT     + +++  E    G+  + D +YE E  E  GEIL
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLSGTGADRVHLLLVCTAERGLCGAFNSSIARLARDHARRLTAEGRTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFDNAETIAQNLLGRFEAGEFDIATLFYSRFRSVIVQIPT-----AQQIIPAEIPPAGEAAQTDAAYEYEPDE--GEIL 221          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.106e-19
Identity = 78/250 (31.20%), Postives = 117/250 (46.80%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIE-GGETKGEIL--*NLADFQFPCVMFNGVLEKGCR 928
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +    +LG+               T T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL      EFD   + YS+F SV+S +PT   ++  EL   E  +        + E E   ET  E L   NL    F  ++ N   E+G R
Sbjct:    3 SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLTGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGAAATGAGSDAAMEFEPNEETILETLLPKNLTVQIFRALLENAASEQGAR 252          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_HUMAN (ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.106e-19
Identity = 63/175 (36.00%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  230 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSF 739
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +  EFD   II++KF SV+S+
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISY 196          
The following BLAST results are available for this feature:
BLAST of DY304602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ATPG3_IPOBA3.720e-11779.93ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH1.120e-11376.84ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_ROSDO1.006e-2130.40ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_BOVIN7.213e-2034.48ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_DINSH1.230e-1930.33ATP synthase gamma chain OS=Dinoroseobacter shibae... [more]
ATPG_METNO2.099e-1929.84ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_PELUB2.741e-1930.96ATP synthase gamma chain OS=Pelagibacter ubique GN... [more]
ATPG_METS46.106e-1930.53ATP synthase gamma chain OS=Methylobacterium sp. (... [more]
ATPG_METEP6.106e-1931.20ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_HUMAN6.106e-1936.00ATP synthase subunit gamma, mitochondrial OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YC18RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304602 ID=DY304602; Name=DY304602; organism=Citrus clementina; type=EST; length=944bp
ATTTGTTCTATACCTGAGCTCGCACGACCCAAACAGAACATAAAGCTTTG
GATCTGCAGCGTTCAAAATAAAATATTTCTAGGGTTTCCTACGACGACGG
TTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGAAGGCCGGCGATT
CGCCACCCCTCTCATCTCCCCATGTCCAATCGCCGCAATCAGATCCCCTT
TCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCTATTTCAACTCAA
ATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCAGAAAATTACAAA
GGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGTTAAAG
CTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTGGTGAC
ACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGACCATCTCTTCTGA
CAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAGCAAGA
GTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACGTCATC
TTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTCAAAGAAAGATAT
TGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCAATTATACCCAGG
TTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAATTTGATGCTTTG
AGGATTATCTATAGCAAGTTCCATTCTGTGGTCTCCTTTCTGCCGACAAT
GGCAACTGTATTATCGCCTGAGCTTGTGGAGAGAGAAGCCGAATCTGGGG
GAAAGCTGGTTGAGCTAGACTCCTATGAAATTGAAGGGGGTGAAACAAAG
GGTGAAATACTTTAAAATCTGGCTGATTTCCAATTTCCCTGTGTCATGTT
CAATGGGGTGTTGGAAAAAGGCTGCCGTTAACCAAGGGGCAAGG
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