DY304603

Overview
NameDY304603
Unique NameDY304603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304603 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.128e-59
Identity = 132/266 (49.62%), Postives = 172/266 (64.66%), Query Frame = 2
Query:   95 TQTQSPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEA-GALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLXXXXXXXXXXXXWFLKNTNRFREPLETLIKDIKKAPC---HDCHKGERNLVEV-ENNG--ILVKQSVIMXXXXXXXXXXXRECHCIFLPITPNPKNGYF 871
            +Q+QSPS+ACKSTPYPKLCR+IL+A KSSPS PY YGKF++KQC KQA +LSK I  Y    + +   + AE  GA+ DCGEL EL+V+YL +++ ELK A+ MT   V+ V SLLSG+VTNQQTC D LV++KSG AA +  P+ N+TRLYS+SLGLV+HAL+RNL                  + +REPLETLIK ++K  C    DC K  RNL E+ E +G  ILV ++VI+            +      P    P++GYF
Sbjct:   74 SQSQSPSLACKSTPYPKLCRTILNAVKSSPSDPYRYGKFTIKQCLKQASRLSKVITSYARRVESKPGSATAEEIGAVADCGELSELSVNYLETVTTELKTAQVMTAALVEHVNSLLSGVVTNQQTCLDGLVEAKSGFAAAIGSPMGNLTRLYSISLGLVSHALNRNLKRFKASKGKILG---GGNSTYREPLETLIKGLRKT-CDNDKDCRKTSRNLGELGETSGGSILVSKAVIVGPFKSDNFTTITDA-IAAAPNNTRPEDGYF 334          
BLAST of DY304603 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.630e-58
Identity = 134/263 (50.95%), Postives = 165/263 (62.74%), Query Frame = 2
Query:  110 PSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTH-EKQRSRFSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLXXXXXXXXXXXXWFLKNTNRFREPLETLIKDIKKA--PCHDCHKGERNLVEV-ENNG--ILVKQSVIMXXXXXXXXXXXRECHCIFLPITPN---PKNGYF 871
            P+IACKSTPYPKLCR+ILSA KSSPS PY+YGKF++KQC KQA++LSK I  +    E      +  E  A+ DCGEL EL+V+YL +++ ELK AE MT   VDRVTSLL G+VTNQQTC D LVD+KSG A  +  PL N+TRLYSVSLGLV+HAL+RNL             F       REPLETLIK ++K      DC K  RNL E+ E +G  ILV+++V +            E     +   PN   P+ GYF
Sbjct:   84 PNIACKSTPYPKLCRTILSAVKSSPSDPYHYGKFTMKQCLKQARRLSKVINRFAQRVEADPGTSTVEEVSAVADCGELAELSVEYLETVTEELKAAELMTAALVDRVTSLLGGVVTNQQTCLDGLVDAKSGFATAIGTPLGNLTRLYSVSLGLVSHALNRNLKRYKGSKGKI---FGGGNKPVREPLETLIKVLRKTCDKGKDCRKANRNLGELGETSGGSILVREAVTVGPYETDNFPTITEA----VAAAPNHTFPEQGYF 339          
BLAST of DY304603 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.181e-16
Identity = 56/168 (33.33%), Postives = 90/168 (53.57%), Query Frame = 2
Query:   86 QNSTQTQSPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEAGALTDCGELMELNVDYLRSISGELK---EAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSG---IAAVLYEPLSNVTRLYSVSLGLVT 571
            Q    + S S  CK+TP PK C+S+    ++S      YG+FS+++   Q++K ++TI  YL  ++  +  S +  GAL DC  L  L  DYL +    +     +++++    D + +LLS  +TN+QTC D +  + S    I   +  PL N T+L+SVSL L T
Sbjct:   23 QTLLPSNSSSTICKTTPDPKFCKSVFP--QTSQGDVREYGRFSLRKSLTQSRKFTRTIDRYL--KRNNALLSQSAVGALQDCRYLASLTTDYLITSFETVNITTSSKTLSFSKADEIQTLLSAALTNEQTCLDGINTAASSSWTIRNGVALPLINDTKLFSVSLALFT 186          
BLAST of DY304603 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13
Identity = 50/155 (32.26%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  107 SPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDEL--VDSKSGIAAVLYEPLSNVTRLYSVSLGL 565
            SPS  C+  P P  CRS+L    + P   Y+YG+ S+++   +A++    I   L  +++    + +  GAL DC  L  L +DYL S S      ++++    + V + LS  +TN+QTC + L    S++G++  L+    N T+LY VSL L
Sbjct:   34 SPSNICRFAPDPSYCRSVLP---NQPGDIYSYGRLSLRRSLSRARRFISMIDAEL--DRKGKVAAKSTVGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDVHTFLSAAITNEQTCLEGLKSTASENGLSGDLF----NDTKLYGVSLAL 179          
BLAST of DY304603 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13
Identity = 57/172 (33.14%), Postives = 83/172 (48.26%), Query Frame = 2
Query:   92 STQTQS-PSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTD------EFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYE-----PLSNVTRLYSVSLGLVT 571
            S+QT S  S  CK+TP PK C+S+   F  S  +   YG FS+++   Q++K  +T+  Y+      S+   A   AL DC  L  L +DYL +    + +  + T          D + +LLS  +TN+QTC + L  + S  A          PL N T+L  VSL L T
Sbjct:   21 SSQTLSNSSTICKTTPDPKYCKSV---FPHSQGNVQQYGCFSIRKSLSQSRKFIRTVDRYIKRNAHLSQ--PAVIRALQDCRFLAGLTMDYLLTSFETVNDTSAKTSFKPLSFPKADDIQTLLSAALTNEQTCLEGLTTAASYSATWTVRTGVALPLVNDTKLLGVSLALFT 187          
The following BLAST results are available for this feature:
BLAST of DY304603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PME25_ARATH1.128e-5949.62Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME47_ARATH3.630e-5850.95Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME41_ARATH1.181e-1633.33Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME20_ARATH2.723e-1332.26Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME7_ARATH6.067e-1333.14Probable pectinesterase/pectinesterase inhibitor 7... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YC19RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304603 ID=DY304603; Name=DY304603; organism=Citrus clementina; type=EST; length=897bp
CCATAAAGATAAAAGAATGAAGTGCCATTCCGTAGCCATTTTATTCTTCT
TCTCCTTCTCACTCCTCTTTCTTTGTTGTTTATCTCAAAACTCCACACAA
ACACAATCACCTTCCATTGCATGCAAATCAACTCCATATCCAAAGCTTTG
CCGTTCGATCCTCTCCGCTTTCAAATCCTCACCGTCCAGCCCTTACAACT
ACGGCAAGTTCTCAGTCAAACAATGCACGAAACAAGCACAAAAGCTCTCC
AAAACCATCAGGCATTACCTCACCCACGAGAAGCAACGGTCCCGATTCAG
CCACGCGGAGGCCGGGGCTCTGACCGACTGCGGGGAGCTGATGGAACTGA
ACGTTGACTACTTACGTTCGATTTCTGGGGAGCTGAAGGAGGCTGAGTCG
ATGACGGATGAATTCGTGGACAGAGTCACGAGTCTGCTGAGTGGGATCGT
CACGAATCAGCAGACTTGCTTTGACGAGCTTGTGGATTCGAAGAGCGGCA
TTGCTGCTGTGCTGTATGAGCCGCTGTCGAATGTGACTCGTTTGTACAGT
GTTTCGCTTGGGCTCGTGACCCACGCACTGGACCGGAATTTGAGGCGGAA
TAAGAAGCGAAGCAAACGGTCCAAGAATTGGTTTTTGAAGAACACGAACC
GGTTTCGTGAACCGCTCGAGACTCTTATCAAGGATATAAAAAAGGCACCT
TGCCATGATTGCCACAAAGGAGAAAGAAATCTTGTTGAAGTGGAGAACAA
TGGAATTCTTGTAAAACAAAGTGTGATAATGAACCCAAATGGGAACTGAT
AATTTCACAACAATCGGGAATGCCATTGCATTTTCCTCCCCATAACTCCA
AACCCGAAAAATGGGTATTTTTGTTATTTATGCACCAAAAACCTGTT
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