DY304612

Overview
NameDY304612
Unique NameDY304612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 6.477e-55
Identity = 137/250 (54.80%), Postives = 147/250 (58.80%), Query Frame = 3
Query:  159 MGFDDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASD--EDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHKXXXXXXXXXXXXPSYMAMP 902
            MGFDD CNTGLVLGLG        P+   NN N    Q          EPSL+L L G+               S+ V  G ++           L RQ S HS VS SFSSGRVVKRERD                SD  EDE+G++ARKKLRLTK+QSALLEESFK HSTLNPKQKQ LARQLNLRPRQVEVWFQNRRA TKLKQTEVDCE LKKCCETL DEN RL K            P YM MP
Sbjct:    1 MGFDDTCNTGLVLGLG--------PSPIPNNYNSTIRQSSVYK----LEPSLTLCLSGD--------------PSVTVVTGADQ-----------LCRQTSSHSGVS-SFSSGRVVKRERDGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMP 212          
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.443e-54
Identity = 136/260 (52.31%), Postives = 157/260 (60.38%), Query Frame = 3
Query:  159 MGFDDGCNTGLVLGLGFASAIETTPTNKANNI----NIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXX------RASDE--DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHKXXXXXXXXXXXXPSYMAMP 902
            MG DD CNTGLVLGLG    +  TP N  + I    + V+H+ ++L      +PSL+L L GE                      Y+    AG  +   + RQ S HS +S SFSSGRV KRER++                   R SD+  DE+GV+ARKKLRLTK+QSALLE++FK HSTLNPKQKQALARQLNLRPRQVEVWFQNRRA TKLKQTEVDCE LKKCCETLTDENRRL K            P YM MP
Sbjct:    1 MGLDDSCNTGLVLGLG----LSPTPNNYNHAIKKSSSTVDHRFIRL------DPSLTLSLSGE---------------------SYKIKTGAGAGDQ--ICRQTSSHSGIS-SFSSGRV-KREREISGGDGEEEAEETTERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHMP 225          
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.121e-41
Identity = 113/260 (43.46%), Postives = 137/260 (52.69%), Query Frame = 3
Query:  171 DGCNTGLVLGLGF---ASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEI--YPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSG-----------RVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHKXXXXXXXXXXXXPSYMAMP 902
            DG    LVLGLG    A         +    ++V   +         EPS+ L L   +  +  + T  ++  +   DVN+    +A A   E       A+P  + S + S G           R                     RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRA TKLKQTEVDCE LK+CCETLT+ENRRLHK            P YM +P
Sbjct:   15 DGGRLELVLGLGVGVGAGVRRGEEEERGRREDVVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGQGLRGHAEAAAQGGGGGGGGERSSSRASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLP 273          
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.121e-41
Identity = 113/260 (43.46%), Postives = 137/260 (52.69%), Query Frame = 3
Query:  171 DGCNTGLVLGLGF---ASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEI--YPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSG-----------RVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHKXXXXXXXXXXXXPSYMAMP 902
            DG    LVLGLG    A         +    ++V   +         EPS+ L L   +  +  + T  ++  +   DVN+    +A A   E       A+P  + S + S G           R                     RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRA TKLKQTEVDCE LK+CCETLT+ENRRLHK            P YM +P
Sbjct:   15 DGGRLELVLGLGVGVGAGVRRGEEEERGRREDVVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGHGLRGHAEAAAQGGGGGGGGERSSSRASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLP 273          
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.642e-40
Identity = 85/113 (75.22%), Postives = 92/113 (81.42%), Query Frame = 3
Query:  564 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHKXXXXXXXXXXXXPSYMAMP 902
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRA TKLKQTEVDCE LK+CCETLT+ENRRL K            P YM +P
Sbjct:  165 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLP 276          
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.642e-40
Identity = 85/113 (75.22%), Postives = 92/113 (81.42%), Query Frame = 3
Query:  564 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHKXXXXXXXXXXXXPSYMAMP 902
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRA TKLKQTEVDCE LK+CCETLT+ENRRL K            P YM +P
Sbjct:   78 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLP 189          
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.499e-39
Identity = 75/93 (80.65%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  567 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHK 845
            A+ +D++G N+RKKLRL+KEQSALLE+ FK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRA TKLKQTEVDCE+LK+CCETLT+ENRRLH+
Sbjct:   82 AAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHR 174          
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.499e-39
Identity = 75/93 (80.65%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  567 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHK 845
            A+ +D++G N+RKKLRL+KEQSALLE+ FK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRA TKLKQTEVDCE+LK+CCETLT+ENRRLH+
Sbjct:   82 AAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHR 174          
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.499e-39
Identity = 100/220 (45.45%), Postives = 134/220 (60.91%), Query Frame = 3
Query:  186 GLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHK 845
            GL LGL F        +N + ++   +     L + + +  S +  +P     +++   T+     IDVN+    +A  G  +  +    +SP+S VS+S  +G+  +RE D              R   +DEDG N+RKKLRL+K+QSA+LEE+FK HSTLNPKQKQALA+QL LR RQVEVWFQNRRA TKLKQTEVDCE L++CCE LT+ENRRL K
Sbjct:    9 GLSLGLNFPKKQINLKSNPSVSVT-PSSSSFGLFRRSSWNESFTSSVPNS---DSSQKETRTFIRGIDVNRP-PSTAEYGDEDAGV----SSPNSTVSSS--TGKRSEREEDTDPQGS--------RGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQK 209          
BLAST of DY304612 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.473e-38
Identity = 103/228 (45.18%), Postives = 123/228 (53.95%), Query Frame = 3
Query:  168 DDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTC--FEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAGTKLKQTEVDCEILKKCCETLTDENRRLHK 845
            D G   GL LG G     +    ++          +   P   C   EPSL+L LP +    AA   T   S                          A   S++S   ++   VKRER               R  D+D+DG + RKKLRLTKEQSALLE+ F++HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRA TKLKQTEVDCE LK+CCETLT+ENRRL +
Sbjct:   11 DAGLALGLSLGGGGGGTTDAAAAHRGGC-------RRPSPSSQCPPLEPSLTLSLPDDAAAGAAATATATASGG---------------------GGPAHSVSSLSVGAAAAAAVKRERAEEADGERVSSTAAGR--DDDDDG-STRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQR 207          
The following BLAST results are available for this feature:
BLAST of DY304612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HAT9_ARATH6.477e-5554.80Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HAT22_ARATH1.443e-5452.31Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HOX27_ORYSJ3.121e-4143.46Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI3.121e-4143.46Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX11_ORYSJ2.642e-4075.22Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI2.642e-4075.22Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX15_ORYSJ8.499e-3980.65Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI8.499e-3980.65Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HAT4_ARATH8.499e-3945.45Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HOX19_ORYSJ2.473e-3845.18Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YD04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304612 ID=DY304612; Name=DY304612; organism=Citrus clementina; type=EST; length=904bp
GTCTTACTCATTCTCTCTTCTTAATAAAGAGGCCCGTTTGCTCCCCCATT
TCTCTCAAACTAAACTCTCCAAATTTCCTCTCTTTTTTTCTTTATTTTTC
TCTCCTTCGCTTCAGAAGTCCCGAGTGTTTCTCAAGACTCTCGAATCTCA
TATCTTAAATGGGTTTTGATGATGGGTGTAACACGGGCCTCGTGCTAGGG
TTAGGTTTCGCATCAGCCATAGAAACTACTCCAACAAATAAGGCGAACAA
TATAAATATTGTCAACCACCAGCAGCTGCAGCTGCCTAAGGGTACATGTT
TTGAGCCATCGCTTAGTCTGGGCCTTCCTGGTGAGATTTACCCTGAGGCT
GCTACTGCTACTACCAAAAAGAATAGTAATAGTATTGATGTGAACAAAGG
TTATGAGGAATCCGCAGCAGCAGGCGTCGCCGAATATCAAATACTAAATC
GTCAGGCTTCTCCTCACAGTGCTGTTTCTAATTCCTTCTCTAGCGGTAGA
GTCGTCAAGAGGGAGAGAGACCTTAGCAGTGAAGAGATAGAGGTTGAAAA
AGTTATTTCCTCAAGAGCCAGTGATGAAGATGAAGACGGTGTTAATGCCA
GAAAGAAACTTAGGCTCACCAAAGAACAATCTGCTCTTCTTGAGGAAAGC
TTCAAACAGCATAGCACTCTCAATCCGAAGCAAAAGCAAGCTTTGGCAAG
GCAACTAAACCTACGGCCAAGACAAGTTGAAGTATGGTTCCAGAATAGGA
GAGCCGGGACAAAGCTCAAGCAAACAGAAGTGGACTGTGAAATCTTGAAG
AAATGCTGTGAAACCCTAACTGATGAAAACAGAAGGCTGCATAAAGAACT
ACAAGAACTTCAAGCTCTGAATCTAGCTCAGCCCTCTTACATGGCTATGC
CGGC
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