DY304617

Overview
NameDY304617
Unique NameDY304617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length965
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304617 vs. ExPASy Swiss-Prot
Match: ABCE1_MOUSE (ATP-binding cassette sub-family E member 1 OS=Mus musculus GN=Abce1 PE=2 SV=1)

HSP 1 Score: 435.261 bits (1118), Expect = 2.578e-121
Identity = 207/274 (75.55%), Postives = 236/274 (86.13%), Query Frame = 3
Query:   96 DKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYSDPPDWQEILSHFRGSELQNYFTKILEDDLKALIKPQYVDKIPKAVKGTVAQLLDNKDEMKNQTQICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSLNSPEKFFIVSEAQL 917
            DKLTRIAIVN D+CKPK+CRQECKKSCPVVRMGKLCIEVTP  KIA ISE LCIGCGIC+KKCPF A++I+N+PSNLEK TTHRY  N+FKLHRLPIPRPGEVLGLVG NGIGKSTALKILAGKQKPNLG+Y DPPDWQEIL++FRGSELQNYFTKILEDDLKA+IKPQYVD+IPKA KGTV  +LD KDE K Q  +C+ LDL+H+++R +  LSGGELQRFA A+VCIQ A++FMF+EPS  LDVK RL    T RSL +P+++ IV E  L
Sbjct:    3 DKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL 276          
BLAST of DY304617 vs. ExPASy Swiss-Prot
Match: ABCE1_HUMAN (ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1)

HSP 1 Score: 435.261 bits (1118), Expect = 2.578e-121
Identity = 207/274 (75.55%), Postives = 236/274 (86.13%), Query Frame = 3
Query:   96 DKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYSDPPDWQEILSHFRGSELQNYFTKILEDDLKALIKPQYVDKIPKAVKGTVAQLLDNKDEMKNQTQICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSLNSPEKFFIVSEAQL 917
            DKLTRIAIVN D+CKPK+CRQECKKSCPVVRMGKLCIEVTP  KIA ISE LCIGCGIC+KKCPF A++I+N+PSNLEK TTHRY  N+FKLHRLPIPRPGEVLGLVG NGIGKSTALKILAGKQKPNLG+Y DPPDWQEIL++FRGSELQNYFTKILEDDLKA+IKPQYVD+IPKA KGTV  +LD KDE K Q  +C+ LDL+H+++R +  LSGGELQRFA A+VCIQ A++FMF+EPS  LDVK RL    T RSL +P+++ IV E  L
Sbjct:    3 DKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL 276          
BLAST of DY304617 vs. ExPASy Swiss-Prot
Match: AB2E_ARATH (ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2 PE=2 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 4.407e-113
Identity = 195/274 (71.17%), Postives = 230/274 (83.94%), Query Frame = 3
Query:   96 DKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYSDPPDWQEILSHFRGSELQNYFTKILEDDLKALIKPQYVDKIPKAVKGTVAQLLDNKDEMKNQTQICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSLNSPEKFFIVSEAQL 917
            D+LTRIAIV++DRCKPK+CRQECKKSCPVV+ GKLCIEVT   K+A ISEELCIGCGICVKKCPF+AI IIN+P +LEK TTHRY  N+FKLHRLP+PRPG+VLGLVG NGIGKSTALKILAGK KPNLGR++ PPDWQEIL+HFRGSELQNYFT+ILED+LKA+IKPQYVD IP+AVKG V ++LD KDE   + ++C  L+L+ + DR++  LSGGELQRFAIA+V IQNAE++MF+EPS  LDVK RL   +  RSL  P  + IV E  L
Sbjct:    3 DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICVKKCPFEAIQIINLPRDLEKDTTHRYGANTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFTSPPDWQEILTHFRGSELQNYFTRILEDNLKAIIKPQYVDHIPRAVKGNVGEVLDQKDERDKKAELCADLELNQVIDRDVENLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276          
BLAST of DY304617 vs. ExPASy Swiss-Prot
Match: RLI1_YEAST (Translation initiation factor RLI1 OS=Saccharomyces cerevisiae GN=RLI1 PE=1 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 6.164e-107
Identity = 189/280 (67.50%), Postives = 226/280 (80.71%), Query Frame = 3
Query:   93 TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYSDPPDWQEILSHFRGSELQNYFTKILEDDLKALIKPQYVDKIPKAVKGTVAQL-----LDNKDEMKNQTQICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSLNSPEKFFIVSEAQL 917
            +DK +RIAIV+AD+CKPK+CRQECK+SCPVV+ GKLCIEVTP  KIA ISE LCIGCGICVKKCPFDAI IIN+P+NLE H THRYS NSFKLHRLP PRPG+VLGLVG NGIGKSTALKILAGKQKPNLGR+ DPP+WQEI+ +FRGSELQNYFTK+LEDD+KA+IKPQYVD IP+A+KG V ++     L  +   ++  +  K+L L ++  R+I  LSGGELQRFAI M C+Q A+++MF+EPS  LDVK RLN  +  RSL +P K+ I  E  L
Sbjct:    2 SDKNSRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281          
BLAST of DY304617 vs. ExPASy Swiss-Prot
Match: YOX6_SCHPO (Uncharacterized ABC transporter ATP-binding protein C14F5.06 OS=Schizosaccharomyces pombe GN=SPBC14F5.06 PE=2 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 2.508e-100
Identity = 177/278 (63.67%), Postives = 217/278 (78.06%), Query Frame = 3
Query:   93 TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYSDPPDWQEILSHFRGSELQNYFTKILEDDLKALIKPQYVDKIPKAVK---GTVAQLLDNKDEMKNQTQICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSLNSPEKFFIVSEAQL 917
            ++ LTRIAIV+ D+C+PK+CRQEC++SCPVVR GKLCIEV P D+IA ISE LCIGCGICVKKCPF AI IIN+P+NLE   THRYS NSFKLHRLP PRPG+VLGLVG NGIGKSTALKIL+GK KPNLGRY +PPDW E++ +FRGSELQN+FTK++ED++KALIKPQYVD IP+A+K    TV+ L+  +    N  ++    DL ++ +RE+  LSGGELQRFAIA V  Q A+++MF+EPS  LD+K RL   R  RSL +   + IV E  L
Sbjct:    2 SESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGICVKKCPFGAINIINLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILSGKMKPNLGRYDNPPDWAEVVKYFRGSELQNFFTKVVEDNIKALIKPQYVDHIPRAIKTGDKTVSGLIKARANNNNFEEVMDHTDLQNLLNREVGHLSGGELQRFAIAAVATQKADVYMFDEPSSYLDIKQRLKAGRVIRSLLATTNYVIVVEHDL 279          
BLAST of DY304617 vs. ExPASy Swiss-Prot
Match: AB1E_ARATH (ABC transporter E family member 1 OS=Arabidopsis thaliana GN=ABCE1 PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 8.069e-99
Identity = 173/275 (62.91%), Postives = 216/275 (78.55%), Query Frame = 3
Query:   93 TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYSDPPDWQEILSHFRGSELQNYFTKILEDDLKALIKPQYVDKIPKAVKGTVAQLLDNKDEMKNQTQICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSLNSPEKFFIVSEAQL 917
            +D+LTRIAIV+ DRCKPK+CRQECKKSCPVV+ GKLCIEV    K A ISEELCIGCGICVKKCPF+AI IIN+P +L K TTHRY  N FKLHRLPIPRPG+VLGLVG NGIGKSTALKILAGK KPNLGR++ PPDW+EIL+HFRGSELQ+YF +++E++LK  IKPQ+VD I + V+G + ++L+  DE     +IC  ++L+ + +RE   +SGGELQRFAIA V ++ A+++MF+EPS  LDV+ RL   +  RSL   + + IV E  L
Sbjct:    2 SDRLTRIAIVSEDRCKPKKCRQECKKSCPVVKTGKLCIEVGSTSKSAFISEELCIGCGICVKKCPFEAIQIINLPKDLAKDTTHRYGANGFKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNTPPDWEEILTHFRGSELQSYFIRVVEENLKTAIKPQHVDYIKEVVRGNLGKMLEKLDERGLMEEICADMELNQVLEREARQVSGGELQRFAIAAVFVKKADIYMFDEPSSYLDVRQRLKAAQVIRSLLRHDSYVIVVEHDL 276          
BLAST of DY304617 vs. ExPASy Swiss-Prot
Match: Y719_METJA (Uncharacterized ABC transporter ATP-binding protein MJ0719 OS=Methanocaldococcus jannaschii GN=MJ0719 PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.705e-70
Identity = 138/282 (48.94%), Postives = 185/282 (65.60%), Query Frame = 3
Query:  108 RIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNL-EKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYSDPPDWQEILSHFRGSELQNYFTKILEDDLKALIKPQYVDKIPKAVKGTVAQLLDNKDEMKNQTQICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSLNSPEKFFIVSEAQLVLPGLPLRIHL 950
            R+AI++ DRC+PK+C  EC K CP VRMG+  IE+  N     ISE LC GCGICVK+CPF AI+II +P  L E    H Y +N FKL  L IPR G V+G++GQNGIGKST L+ILAG+  PNLG++   P++ +++ +FRG+ELQ YF K+    +KA+ K QYVD +PK VKG V  LL   DE     ++ + L+L +I DRE++ LSGGELQR AIA   ++N +++ F+EPS  LD++ R N  R  R LN   K  +V    +VL  L   IH+
Sbjct:   14 RLAIIDYDRCQPKKCSMECMKYCPGVRMGEKTIEIDENTGKPVISEVLCSGCGICVKRCPFKAISIIGLPEELSEDKIVHSYGQNRFKLFGLVIPRDG-VVGIIGQNGIGKSTVLRILAGELIPNLGKHDKEPNYDDVIKYFRGTELQEYFEKLKNKGVKAIHKVQYVDILPKVVKGKVGDLLKKVDEKGKFDEVVEKLELKNILDRELSQLSGGELQRVAIAAAYLRNGDIYFFDEPSSWLDIRQRFNAARLIRELN---KVVVVEHDLIVLDYLSDYIHI 291          

HSP 2 Score: 87.4261 bits (215), Expect = 1.318e-16
Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 3
Query:  396 GEVLGLVGQNGIGKSTALKILAGKQKPNLGRYSDPPDWQEILSHFRGSELQNYFTKILEDDLKALIKPQYVDKIPKAVKGTVAQLLDNKDEMKN---QTQICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSL 875
            GEV+G++G NGIGK+T +K+LAG  KP+ G                          I E D+K   KPQY   I     GTV  LL +   +     +++I   L L  + DRE+  LSGGELQR AIA    ++A++++ +EPS  LDV+ RL   +  R +
Sbjct:  373 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGEV------------------------IKEGDIKVSYKPQY---ITPDYDGTVEDLLSSITNIHTSYYKSEIINPLQLEKLLDREVRELSGGELQRVAIAACLSRDADIYLLDEPSAFLDVEQRLRVSKVIRRI 508          
BLAST of DY304617 vs. ExPASy Swiss-Prot
Match: Y4021_METAC (Putative ABC transporter ATP-binding protein MA_4021 OS=Methanosarcina acetivorans GN=MA_4021 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.732e-12
Identity = 52/184 (28.26%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  393 PGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYS--DPPDWQEILSHFRGSELQNYF-TKI---LEDDLKALIKPQYVDKIPKAVKGTVAQLLDNKDEMKNQT-QICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSLNSPEKFFIVSEAQLVL 923
            PGE + ++G NG GKST L +L G   P +G +   D    +E+    + +E ++YF TK+    ++    L  P   +++         QL    +E+K +  ++ +M++L+ ++DR    LSGGE ++  IA V   N ++ + +EP+  LD + +L      + L S  K  I++   L L
Sbjct:   30 PGEQISIIGSNGSGKSTLLSLLDGLIYPTVGEFYAFDNKIVEEVFDTIKDNEFRSYFRTKVGFLFQNSDVQLFSPTVFEEVAFGP----LQLNITPEEVKTRVLEVLEMMELTKLKDRSPHTLSGGEKKKLCIATVLATNPDVLLLDEPTAGLDPRTQLWLTELLQELGSMGKTIIIATHDLEL 209          
BLAST of DY304617 vs. ExPASy Swiss-Prot
Match: Y753_CLOTE (Putative ABC transporter ATP-binding protein CTC_00753 OS=Clostridium tetani GN=CTC_00753 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.178e-11
Identity = 61/206 (29.61%), Postives = 100/206 (48.54%), Query Frame = 3
Query:  321 NLEKHTTHRYSKN-SFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYSDPPDWQEILSHFRGSEL---QNYFTKILEDDLKALIKPQYVDKIP------KAVKGTVAQLLDNKDEMKNQT--QICKMLDLSHIRDREIAALSGGELQRFAIAMVCIQNAELFMFEEPSF*LDVKHRLNPPRTKRSLNSPEKFFIV 902
            N E    ++  K+ SFKLHR      GE++ ++G+NG GKST  KI+AG                 ++  ++G  L   +N  +  L++ +K   K  Y+ + P      K V   V   L N  E K +   Q+ K+L++S++ D+    LSGGE QR AIA   I + E+ + +EP+  +D + + N     ++L    K  +V
Sbjct:  192 NFEYERGYKILKDLSFKLHR------GEIMTVMGENGAGKSTLFKIIAG-----------------MIDKYKGKVLIDNKNIKSLKLKERIK---KIGYLSQNPNDYFGRKTVFEEVGYTLKNIGEYKEEKVEQVMKLLNISYLEDKNPRDLSGGEKQRVAIACTIITDPEILILDEPTRGMDAEAKENLGEIIKTLAEVGKSIVV 371          
The following BLAST results are available for this feature:
BLAST of DY304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ABCE1_MOUSE2.578e-12175.55ATP-binding cassette sub-family E member 1 OS=Mus ... [more]
ABCE1_HUMAN2.578e-12175.55ATP-binding cassette sub-family E member 1 OS=Homo... [more]
AB2E_ARATH4.407e-11371.17ABC transporter E family member 2 OS=Arabidopsis t... [more]
RLI1_YEAST6.164e-10767.50Translation initiation factor RLI1 OS=Saccharomyce... [more]
YOX6_SCHPO2.508e-10063.67Uncharacterized ABC transporter ATP-binding protei... [more]
AB1E_ARATH8.069e-9962.91ABC transporter E family member 1 OS=Arabidopsis t... [more]
Y719_METJA2.705e-7048.94Uncharacterized ABC transporter ATP-binding protei... [more]
Y4021_METAC5.732e-1228.26Putative ABC transporter ATP-binding protein MA_40... [more]
Y753_CLOTE2.178e-1129.61Putative ABC transporter ATP-binding protein CTC_0... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YD09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304617 ID=DY304617; Name=DY304617; organism=Citrus clementina; type=EST; length=965bp
TTCGAAGTTAAAGGACACGCGAACATAGGCAAGATATCGCCAACGTTCGC
TTTTAAAAAGCAGAAATGTCCCGGAACAGGAACCAAGAAGAAACTGATAA
ACTTACGCGTATTGCTATTGTAAACGCCGATCGTTGCAAACCAAAGAGAT
GCAGGCAAGAGTGCAAGAAAAGCTGCCCCGTGGTGCGTATGGGCAAGCTG
TGCATTGAAGTGACGCCCAATGACAAGATAGCAACTATATCCGAGGAACT
CTGCATTGGTTGTGGTATTTGTGTCAAGAAATGTCCCTTCGACGCAATCA
CTATCATCAACATCCCGTCAAACCTGGAGAAGCATACCACCCATCGCTAC
TCCAAAAACTCATTCAAGCTCCATCGCTTGCCGATTCCACGTCCAGGAGA
AGTCCTTGGGCTTGTTGGGCAAAACGGTATTGGCAAGTCAACTGCCCTGA
AGATCCTTGCTGGCAAACAGAAGCCCAATCTTGGACGTTATTCTGACCCT
CCAGACTGGCAAGAGATCCTGTCTCACTTCCGCGGCTCTGAGCTCCAGAA
CTACTTCACCAAGATTCTGGAAGATGATCTGAAGGCTTTGATCAAGCCGC
AGTATGTGGACAAAATCCCAAAGGCTGTGAAAGGAACTGTAGCTCAACTG
CTAGACAACAAGGATGAGATGAAGAACCAGACTCAGATCTGCAAAATGCT
TGATCTATCTCACATCCGTGACCGTGAAATAGCAGCGCTGTCTGGTGGAG
AGTTGCAGCGCTTTGCCATCGCCATGGTGTGCATTCAGAACGCTGAACTA
TTCATGTTTGAAGAGCCGTCCTTCTAATTGGACGTGAAACACCGTCTGAA
CCCCCCCCGTACGAAACGCTCGCTTAATTCTCCGGAAAAATTCTTTATTG
TATCCGAAGCCCAACTTGTCCTTCCTGGACTACCTCTTCGAATTCATTTG
GCGGTCTGTCGGGGA
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