DY304624

Overview
NameDY304624
Unique NameDY304624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 6.288e-98
Identity = 180/198 (90.91%), Postives = 185/198 (93.43%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPXXXXXXXXXAQEACSIL 715
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDK FLA H GAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKVVLQPP         AQ++CSIL
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPP-KQKKKKREAQKSCSIL 197          
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 5.323e-97
Identity = 172/198 (86.87%), Postives = 184/198 (92.93%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPXXXXXXXXXAQEACSIL 715
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKLDLRDDKQF A H GAVPI+TAQGEEL+KLIGAP YIECS+KTQQNVKAVFDAAIKVVLQPP         +Q+ CSIL
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQPPKNKKKKKRKSQKGCSIL 198          
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 3.450e-96
Identity = 176/198 (88.89%), Postives = 184/198 (92.93%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPXXXXXXXXXAQEACSIL 715
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF   H GAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKVVLQPP         AQ+ACSIL
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPP-KTKKKKSKAQKACSIL 197          
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 350.903 bits (899), Expect = 5.885e-96
Identity = 177/198 (89.39%), Postives = 182/198 (91.92%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPXXXXXXXXXAQEACSIL 715
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKLDLRDDKQF   H GAVPI+TAQGEELRKLIGA  YIECSSKTQQN+KAVFDAAIKVVLQPP         AQ+ C+IL
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQPP-KQKKKKKKAQKGCAIL 197          
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.921e-95
Identity = 175/198 (88.38%), Postives = 183/198 (92.42%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPXXXXXXXXXAQEACSIL 715
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF   H GAVPITTAQGEELRKLI AP YIECSSK+QQNVKAVFDAAI+VVLQPP         AQ+ACSIL
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPP-KQKKKKSKAQKACSIL 197          
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 3.815e-95
Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 664
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF   H GAVPITT QGEEL+KLIG+P+YIECSSKTQQNVKAVFDAAIKVVLQPP
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQPP 181          
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 347.821 bits (891), Expect = 4.982e-95
Identity = 173/198 (87.37%), Postives = 183/198 (92.42%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPXXXXXXXXXAQEACSIL 715
            MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF   H GAVPITTAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAI+VVLQPP         AQ+ACSIL
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQPP-KQKKKKSKAQKACSIL 197          
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 1.110e-94
Identity = 172/198 (86.87%), Postives = 183/198 (92.42%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPXXXXXXXXXAQEACSIL 715
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF   H GAVPITTAQGEEL+KLIGAP YIECSSKTQ+NVK VFDAAI+VVLQPP         AQ+ACSIL
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQPP-KQKKKKSKAQKACSIL 197          
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 4.218e-94
Identity = 175/198 (88.38%), Postives = 179/198 (90.40%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPXXXXXXXXXAQEACSIL 715
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF   H GAVPITTAQGEELRK IGAP YIECSSKTQ NVK VFDAAIKVVLQPP          + ACSIL
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQPP-KAKKKKKAQRGACSIL 197          
BLAST of DY304624 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 9.396e-94
Identity = 170/198 (85.86%), Postives = 182/198 (91.92%), Query Frame = 2
Query:  122 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAYHRGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPXXXXXXXXXAQEACSIL 715
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF   H GAVPITT QGEEL+KLIGAP YIECSSK+Q+NVK VFDAAI+VVLQPP         AQ+ACSIL
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQPP-KQKKKKNKAQKACSIL 197          
The following BLAST results are available for this feature:
BLAST of DY304624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_LOTJA6.288e-9890.91Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC3_ARATH5.323e-9786.87Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC1_BETVU3.450e-9688.89Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC5_ORYSJ5.885e-9689.39Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RHO1_PEA2.921e-9588.38Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC5_ARATH3.815e-9594.48Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC11_ARATH4.982e-9587.37Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC1_ARATH1.110e-9486.87Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC6_ORYSJ4.218e-9488.38Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC6_ARATH9.396e-9485.86Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YD16RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304624 ID=DY304624; Name=DY304624; organism=Citrus clementina; type=EST; length=912bp
ATCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGCACTTGTTCTGAGTT
ATGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAACACAGAGGCTGT
CTCAAGTGCACGTGGCGCGAGATGAGTGCGTCGAGGTTCATAAAGTGCGT
GACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCATTTCTTACA
CCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTGACAATTTC
AGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGGTTGTGGGA
CACTGCAGGCCAGGAAGATTACAATAGACTAAGGCCATTGAGCTACCGTG
GGGCAGATGTCTTCTTACTCGCATTCTCTCTCATTAGCAAGGCCAGCTAT
GAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCTGG
TGTTCCAATAATTCTTGTCGGGACGAAGCTCGATCTTCGGGATGATAAGC
AGTTCCTTGCATATCACCGTGGTGCAGTGCCAATTACCACGGCCCAAGGG
GAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATCGAGTGTAGTTC
CAAGACACAACAGAATGTGAAAGCTGTCTTTGATGCAGCCATCAAGGTGG
TTCTCCAGCCACCAAAGAACAAGAAGAAAAAGAAGAGAAAGGCACAAGAG
GCTTGCTCTATATTGTGATTCTTCAAAACAAGAGTTCTGTGAAGGAAACG
TGACCAATTCATAATTTATCCTAAACCTTACCTTCTATGTTTTCCTCGAC
TCTTCCTGCCTCATGGCAGACCCAGTGGTTTATGGTCTCAACTGACCCAT
TTAAATGGCTATGTAGAAGCCTCATATTACGTGTTTCCTCCTTTTGGTTT
GTGTTTTCACCT
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