DY304629

Overview
NameDY304629
Unique NameDY304629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: Y1390_ARATH (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 4.137e-86
Identity = 155/179 (86.59%), Postives = 165/179 (92.18%), Query Frame = 3
Query:  114 MSFDDEE---SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPT 641
            MSF++EE   + EHTLLVVREV VYKIPPRTTSGGYKCGEWLQSDKIW+GRLRVVSCKDRCEIRLED NSG+LFAACFV PG+RENSVE  LDSSRYFVL+I+DG GK+AFIGLGF ERNEAFDFNVALSDHEKYVRRE EKE+GE SESD HIDIHPAVNHRLKEGETIRINVKPKPT
Sbjct:    1 MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPKPT 179          
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: NECP2_RAT (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus GN=Necap2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.154e-34
Identity = 79/169 (46.75%), Postives = 106/169 (62.72%), Query Frame = 3
Query:  126 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 626
            +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V+++ E      +  +G     P ++   KEG+TI+IN+
Sbjct:    2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG-----PKLDLGFKEGQTIKINI 162          
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: NECP1_PONAB (Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.154e-34
Identity = 78/168 (46.43%), Postives = 109/168 (64.88%), Query Frame = 3
Query:  129 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 626
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E      E+S+    +D  P ++   KEG+TI++++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE-----SEISKESQEMDARPKLDLGFKEGQTIKLSI 163          
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: NECP2_MOUSE (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus GN=Necap2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.814e-34
Identity = 79/169 (46.75%), Postives = 106/169 (62.72%), Query Frame = 3
Query:  126 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 626
            +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIGLGF +R +AFDFNVAL DH K+V+++ E      +  +G     P ++   K+G+TI+IN+
Sbjct:    2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG-----PKLDLGFKDGQTIKINI 162          
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: NECP1_RAT (Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus GN=Necap1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.675e-34
Identity = 82/170 (48.24%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  129 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINV 626
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEM-------DSRPKLDLGFKEGQTIKLSI 163          
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: NECP1_BOVIN (Adaptin ear-binding coat-associated protein 1 OS=Bos taurus GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.675e-34
Identity = 78/168 (46.43%), Postives = 110/168 (65.48%), Query Frame = 3
Query:  129 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 626
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF++R +AFDFNV+L DH K+V++E      E+S+    +D  P ++   KEG+TI++++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFNVSLQDHFKWVKQE-----SEISKESQEMDSRPKLDLGFKEGQTIKLSI 163          
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: NECP1_MOUSE (Adaptin ear-binding coat-associated protein 1 OS=Mus musculus GN=Necap1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.800e-34
Identity = 82/170 (48.24%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  129 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINV 626
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEM-------DNRPKLDLGFKEGQTIKLSI 163          
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: NECP2_HUMAN (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.269e-34
Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = 3
Query:  126 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 626
            +E   E  L V  +V VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V+++ E      +   G     P ++   KEG+TI++N+
Sbjct:    2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG-----PKLDLGFKEGQTIKLNI 162          
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: NECP1_HUMAN (Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens GN=NECAP1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 6.269e-34
Identity = 78/166 (46.99%), Postives = 107/166 (64.46%), Query Frame = 3
Query:  129 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRI 620
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E      E+S+    +D  P ++   KEG+TI++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE-----SEISKESQEMDARPKLDLGFKEGQTIKL 161          
BLAST of DY304629 vs. ExPASy Swiss-Prot
Match: NECP2_BOVIN (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus GN=NECAP2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.069e-33
Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = 3
Query:  126 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 626
            +E   E  L V  +V VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V+++ E      +   G     P ++   KEG+TI++N+
Sbjct:    2 EEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG-----PKLDLSFKEGQTIKLNI 162          
The following BLAST results are available for this feature:
BLAST of DY304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y1390_ARATH4.137e-8686.59Uncharacterized protein At1g03900 OS=Arabidopsis t... [more]
NECP2_RAT2.154e-3446.75Adaptin ear-binding coat-associated protein 2 OS=R... [more]
NECP1_PONAB2.154e-3446.43Adaptin ear-binding coat-associated protein 1 OS=P... [more]
NECP2_MOUSE2.814e-3446.75Adaptin ear-binding coat-associated protein 2 OS=M... [more]
NECP1_RAT3.675e-3448.24Adaptin ear-binding coat-associated protein 1 OS=R... [more]
NECP1_BOVIN3.675e-3446.43Adaptin ear-binding coat-associated protein 1 OS=B... [more]
NECP1_MOUSE4.800e-3448.24Adaptin ear-binding coat-associated protein 1 OS=M... [more]
NECP2_HUMAN6.269e-3445.56Adaptin ear-binding coat-associated protein 2 OS=H... [more]
NECP1_HUMAN6.269e-3446.99Adaptin ear-binding coat-associated protein 1 OS=H... [more]
NECP2_BOVIN1.069e-3345.56Adaptin ear-binding coat-associated protein 2 OS=B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YD21RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304629 ID=DY304629; Name=DY304629; organism=Citrus clementina; type=EST; length=899bp
CCACTCCTCTGAATTGATTCCTTCGTTTCACCTCTCTCGTCATTGTTCTT
CAATTCAGTTAAGTCACCTCAAATTCACTCGCATTTCTTCTTCATTTCCC
AAACAAAACGACCATGTCGTTCGACGACGAAGAATCGTTAGAGCACACGC
TCCTTGTCGTCCGCGAAGTCTGCGTTTACAAAATCCCCCCGCGTACAACC
TCTGGCGGCTACAAATGCGGCGAATGGTTGCAGTCCGACAAGATCTGGAC
AGGCCGCCTCCGGGTCGTATCCTGTAAGGACCGGTGTGAGATCCGGTTAG
AGGATCCCAACTCCGGCGAGCTCTTCGCAGCTTGTTTCGTTCAACCCGGC
CAGCGTGAGAACTCTGTGGAGACCGTCCTCGACTCGTCCCGATATTTCGT
GCTCAAGATCGAGGACGGTACAGGAAAACACGCGTTTATTGGATTAGGCT
TTAATGAGAGAAATGAAGCGTTTGATTTCAACGTCGCGTTGTCGGATCAC
GAGAAATACGTGAGACGAGAACTCGAGAAGGAGAGTGGCGAGATGAGTGA
GAGCGATGGTCATATCGATATACATCCCGCAGTTAATCATAGATTAAAGG
AAGGAGAAACGATCCGGATCAATGTGAAGCCCAAACCGACTAGTGGAACT
GGCATGCTTTCAGCTGCAGGGCTGTCTGGGGCGGTTTCAGTTTCGGCAAA
GGCTAAAACGGTGGGGGCTTGCCCACCCACTAGTGAAATGGGAAAAATAA
GGGCACCTCTGCCGCCGCCACCCAATGGTCCCGGTGCGGGCAAGAACAAC
TCAGCTGGTCCAAAAATGGGTGTCGGGGCCCCGAAGGAACCCCAAGGGGA
TCTACTAGTGGTCCCTTCTTTCAAACCCTTTCCAAAATGGGGGAAGGTA
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