DY304633

Overview
NameDY304633
Unique NameDY304633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length942
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304633 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.545e-22
Identity = 85/278 (30.58%), Postives = 128/278 (46.04%), Query Frame = 3
Query:   21 DGTIERYLNTVY---VPPGLDTATGVQSKDVVVSPETSVKARIFIPKI---DGPPQKL-----------PLLVHYHGGAFSIASAFDTNGTNYLNSLVSHGNIIAVSIDYRLAPEHPLPIAYDDSWAALQWVATHSNGSGPEPWLNKYADLG-RFCLEGESAGANIAHHVAVRAGSTGLAGLKITGVLAVHPFFG------------------VKQHDALYKYVCPSSDLDDDPNLNP--EVDPNLKKMACKRLLVCVAENDELRDRGGAYYETLAKS 740
            DGT  R+L       V    +   GV S DV++    ++ +R++ P     + PP  L           P+++ +HGG+F+ +SA           LV     + VS++YR APE+P P AYDD W AL WV + S       WL    D      L G+S+G NIAH+VA+RAG    +G+ + G + ++P FG                  V+  D  +K   P  +  + P  NP      +L+ ++  + LV VA  D +RD   AY E L K+
Sbjct:   38 DGTFNRHLAEYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS-------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKA 305          
BLAST of DY304633 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.231e-21
Identity = 89/325 (27.38%), Postives = 140/325 (43.08%), Query Frame = 3
Query:   21 DGTIERYLNTVY---VPPGLDTATGVQSKDVVVSPETSVKARIFIPKIDGPPQK---------------------LPLLVHYHGGAFSIASAFDTNGTNYLNSLVSHGNIIAVSIDYRLAPEHPLPIAYDDSWAALQWVATHSNGSGPEPWLNKYADL-GRFCLEGESAGANIAHHVAVRAGSTGLAGLKITGVLAVHPFFG------------------VKQHDALYKYVCPSSDLDDDPNLNPEVDPNLKKMA---CKRLLVCVAENDELRDRGGAYYETLAKSEWGGRVELYETLDGDHLLSMFSDPNTEKVKPLVKKMVDF 857
            DGT ER L       VP       GV S D ++     ++ RI+    +G  ++                      P+++ +HGG+F  +SA  T   +     V     + VS++YR APEH  P AYDD W AL+WV +       +P++    D   R  L G+S+G NIAHHVAVRA      G+K+ G + ++  FG                  ++  D  +K   P     D P  NP   PN +++      + L+ V+  D   DR  AY + L   E G  V++ +  +    +  +  PNT     +++++ DF
Sbjct:   38 DGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNP-FGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADAL--REDGHHVKVVQCENA--TVGFYLLPNTVHYHEVMEEISDF 347          
BLAST of DY304633 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.805e-21
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 3
Query:  174 LPLLVHYHGGAFSIASAFDTNGTNYLNSLVSHGNIIAVSIDYRLAPEHPLPIAYDDSWAALQWVATHSNGSGPEPWLNKYADLGRFC-LEGESAGANIAHHVAVRAGSTGLAGLKITGVLAVHPFFG------------------VKQHDALYKYVCPSSDLDDDPNLNP--EVDPNLKKMACKRLLVCVAENDELRDRGGAYYETLAKS 740
            +P+L+ +HGG+F+ +SA       +   LV+   ++ VS+DYR +PEH  P AYDD W AL WV +         WL    D   +  L G+S+G NIAH+VAVRA +    G+K+ G + +HP FG                  ++  D  ++   P  +  D P  NP      +LK +   + LV VA  D ++D   AY + L K+
Sbjct:  106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS-------RVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKT 305          
BLAST of DY304633 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.477e-21
Identity = 80/276 (28.99%), Postives = 126/276 (45.65%), Query Frame = 3
Query:   21 DGTIERYLNTVY---VPPGLDTATGVQSKDVVVSPETSVKARIFIPKIDGPPQKL------------PLLVHYHGGAFSIASAFDTNGTNYLNSLVSHGNIIAVSIDYRLAPEHPLPIAYDDSWAALQWVATHSNGSGPEPWLNKYADLG-RFCLEGESAGANIAHHVAVRAGSTGLAGLKITGVLAVHPFFG------------------VKQHDALYKYVCPSSDLDDDPNLNP--EVDPNLKKMACKRLLVCVAENDELRDRGGAYYETLAKS 740
            DGT  R+L       VP   +   GV S DV++  +T++ +R++ P   G    +            P++V +HGG+F+ +SA           LV     + VS++YR APE+  P AYDD WA L+WV + S       WL    D   R  L G+S+G NI H+VAVRA     + + + G + ++P FG                  V+  D  ++   P  +  + P  +P      +L+ ++  + LV VA  D ++D    Y E L K+
Sbjct:   38 DGTFNRHLAEFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS-------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKA 303          
BLAST of DY304633 vs. ExPASy Swiss-Prot
Match: YFZ3_SCHPO (AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe GN=SPAC1039.03 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.229e-12
Identity = 69/269 (25.65%), Postives = 103/269 (38.29%), Query Frame = 3
Query:   45 NTVYVPPGLDTATGVQSKDVVVSPETSVKA------RIFIPKIDGPPQKLPLLVHYHGGAFSIASAFDTNGTNYLNSLVSHGNIIAVSIDYRLAPEHPLPIAYDDSWAALQWVATHSNGSGPEPWLNKYADLGRFCLEGESAGANIA----HHVAVRAGSTGLAGLKITGVLAVHPFFGVKQHDA-----------------LYKYVCPSSDLDDDPNLNPEVDPNLKKMACKRLLVCVAENDELRDRGGAYYETLAKSEWGGRVELYE 770
            N   V PG      V+S + +  P    KA      RIF P    P    P  + +HGG + + +    N  ++   +      + V++DYRLAPE P P   DD W AL +   +++  G  P  NK A      + G SAG NIA    H VA    +     L++  V         K H +                   ++  P+     +P  +P   P+         L+C A  D L     AY E L K+     +++YE
Sbjct:   51 NNGNVMPGQSELLPVESTEDITIPRKHTKAPSGVPSRIFRPHGTAPEGGWPCFLWFHGGGWVLGNINTEN--SFATHMCEQAKCVVVNVDYRLAPEDPFPACIDDGWEALLYCYENADTLGINP--NKIA------VGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVPVCDNTANAKTHKSWELFENTPQLPAAKMMWYRRHYLPNEKDWSNPEASPFFYPDSSFKNVCPALICAAGCDVLSSEAIAYNEKLTKAGVESTIKIYE 309          
The following BLAST results are available for this feature:
BLAST of DY304633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L1_ARATH1.545e-2230.58Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ2.231e-2127.38Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH3.805e-2132.86Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH8.477e-2128.99Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
YFZ3_SCHPO3.229e-1225.65AB hydrolase superfamily protein C1039.03 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YE01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304633 ID=DY304633; Name=DY304633; organism=Citrus clementina; type=EST; length=942bp
CCTACTTCAAAGTTTACAAAGATGGCACCATAGAGAGGTATCTTAATACA
GTTTACGTTCCCCCAGGCCTAGACACAGCAACCGGAGTCCAATCCAAAGA
CGTCGTGGTCTCGCCGGAGACCAGCGTTAAGGCCCGTATTTTCATTCCAA
AAATCGACGGCCCACCCCAAAAGCTTCCACTCCTGGTTCACTACCATGGC
GGAGCTTTTAGCATAGCCTCGGCCTTTGATACAAATGGAACTAATTATCT
CAATTCGCTTGTGTCCCATGGTAATATCATTGCCGTATCCATTGATTATA
GGCTTGCCCCAGAGCATCCTCTCCCAATTGCTTATGATGACTCATGGGCC
GCGCTGCAGTGGGTTGCTACCCACTCCAACGGGTCAGGCCCCGAACCTTG
GCTCAACAAATATGCCGACCTGGGGCGGTTTTGCTTGGAGGGCGAGAGTG
CCGGGGCGAATATAGCTCACCACGTGGCGGTCCGAGCTGGCAGTACCGGC
TTGGCTGGGTTGAAAATTACTGGGGTACTTGCAGTGCACCCATTCTTTGG
AGTCAAGCAGCATGATGCACTGTACAAGTATGTATGTCCAAGTAGCGATT
TGGATGATGACCCGAATTTGAACCCAGAAGTGGATCCGAACTTGAAGAAA
ATGGCTTGCAAGCGATTGTTGGTGTGTGTGGCCGAGAACGATGAGCTCAG
AGATAGAGGCGGGGCTTATTATGAGACTTTGGCTAAAAGTGAGTGGGGTG
GCAGAGTAGAATTGTACGAGACTCTTGATGGGGACCATTTGCTTTCTATG
TTTAGTGATCCCAATACTGAAAAGGTTAAGCCCTTGGTGAAGAAAATGGT
TGATTTCACCTATCAATGAAACTGAACGTTACCGTTTTACTTCTTGGGTT
CGAATAATTAAAAAAAATTCCCTGGGTTCCCCGAATTATTTT
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