DY304636

Overview
NameDY304636
Unique NameDY304636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length954
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: Y4958_ARATH (Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.751e-75
Identity = 145/220 (65.91%), Postives = 167/220 (75.91%), Query Frame = 1
Query:  271 MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEXXXXXXXXXXXXXXXXCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIV 918
            MAA RN+    G+R + +DEE        +G   D+SPT KR KSERFPL+ WE                CIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+GYCSTYIFMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV  +   K+RFFQAEIAKRR +LLNYMLFLRITP+LPNLF N +SPIV
Sbjct:    1 MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFTVFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEKLRFFQAEIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIV 220          
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: TM41B_DANRE (Transmembrane protein 41B OS=Danio rerio GN=tmem41b PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.060e-26
Identity = 59/145 (40.69%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  505 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIVQQTISKF 939
            K+K+P+ + D + L   L+ Y   Y    ++ Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V   L  + + +  ++ K R+ L+NY++FLRITP LPN F N  SP++   +  F
Sbjct:   76 KIKIPKDMEDAKALGTVLSKYKDTYYTQVLLAYFATYIFLQTFAIPGSIFLSILSGYLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPMVYKYLTERAQKWSQQVDKHREHLINYIIFLRITPFLPNWFINITSPVINVPLGVF 220          
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: TM41B_XENLA (Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.362e-26
Identity = 60/145 (41.38%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  505 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIVQQTISKF 939
            K+K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V   L+ K   +  ++ + R  L+NY++FLRITP LPN F N  SP++   +  F
Sbjct:   72 KIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAYFTTYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYLLSYLVGRPVVYKYLSDKAIKWSQQVERHRDHLINYIIFLRITPFLPNWFINITSPVINVPLKVF 216          
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: TM41_DICDI (Transmembrane protein 41 homolog OS=Dictyostelium discoideum GN=DDB_G0275543 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 5.262e-26
Identity = 61/145 (42.07%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  508 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIVQQTISKFS 942
            ++LP+   D++LL D L+ Y  D     I  +   Y F+Q F IPG++F+S L+G LFG+  G  LV F AT GA+  + +S  IGR LV+ +   K++ F   ++++R  LLNY++FLRITP LPN F N ASP++   I  F+
Sbjct:  131 IRLPKNFKDVKLLSDILSQYTDDNYFIVITTFGVIYTFLQAFSIPGSVFLSFLSGGLFGLKVGFPLVCFVATLGATFSYLISYYIGRNLVRKLFPDKLKLFSDSLSQKRDNLLNYIVFLRITPFLPNWFINLASPLLDVPIHTFA 275          
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: TM41B_CHICK (Transmembrane protein 41B OS=Gallus gallus GN=TMEM41B PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.262e-26
Identity = 62/159 (38.99%), Postives = 96/159 (60.38%), Query Frame = 1
Query:  472 IYLTMP--AADYGK-LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIVQQTISKF 939
            +Y   P  + + GK +K+PR + D + L   L+ Y   + V  ++ Y +TY+F+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V   L  K   +  ++ + R+ L+NY++FLRITP LPN F N  SP++   +  F
Sbjct:   49 VYKNFPQLSEEEGKCIKIPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYVFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSEQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVF 207          
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: TM41B_RAT (Transmembrane protein 41B OS=Rattus norvegicus GN=Tmem41b PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.872e-26
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 1
Query:  508 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIVQQTISKF 939
            +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V   L  K   +  ++ + R+ L+NY++FLRITP LPN F N  SP++   +  F
Sbjct:   86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVF 229          
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: TM41B_PONAB (Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.872e-26
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 1
Query:  508 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIVQQTISKF 939
            +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V   L  K   +  ++ + R+ L+NY++FLRITP LPN F N  SP++   +  F
Sbjct:   86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVF 229          
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: TM41B_MOUSE (Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.872e-26
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 1
Query:  508 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIVQQTISKF 939
            +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V   L  K   +  ++ + R+ L+NY++FLRITP LPN F N  SP++   +  F
Sbjct:   86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVF 229          
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: TM41B_HUMAN (Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.872e-26
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 1
Query:  508 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIVQQTISKF 939
            +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V   L  K   +  ++ + R+ L+NY++FLRITP LPN F N  SP++   +  F
Sbjct:   86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVF 229          
BLAST of DY304636 vs. ExPASy Swiss-Prot
Match: TM41B_XENTR (Transmembrane protein 41B OS=Xenopus tropicalis GN=tmem41b PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.411e-25
Identity = 59/145 (40.69%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  505 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVKLVLA*KVRFFQAEIAKRRKKLLNYMLFLRITPSLPNLFTNFASPIVQQTISKF 939
            K+K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS  + LS L+GRP+V   L+ K   +  ++ + R  L+NY++FLRITP LPN F N  SP++   +  F
Sbjct:   72 KIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAYFTTYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFSYLLSYLVGRPVVYKYLSDKAIKWSQQVERHRDHLINYIIFLRITPFLPNWFINITSPVINVPLKVF 216          
The following BLAST results are available for this feature:
BLAST of DY304636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
Y4958_ARATH2.751e-7565.91Uncharacterized membrane protein At4g09580 OS=Arab... [more]
TM41B_DANRE1.060e-2640.69Transmembrane protein 41B OS=Danio rerio GN=tmem41... [more]
TM41B_XENLA2.362e-2641.38Transmembrane protein 41B OS=Xenopus laevis GN=tme... [more]
TM41_DICDI5.262e-2642.07Transmembrane protein 41 homolog OS=Dictyostelium ... [more]
TM41B_CHICK5.262e-2638.99Transmembrane protein 41B OS=Gallus gallus GN=TMEM... [more]
TM41B_RAT6.872e-2640.97Transmembrane protein 41B OS=Rattus norvegicus GN=... [more]
TM41B_PONAB6.872e-2640.97Transmembrane protein 41B OS=Pongo abelii GN=TMEM4... [more]
TM41B_MOUSE6.872e-2640.97Transmembrane protein 41B OS=Mus musculus GN=Tmem4... [more]
TM41B_HUMAN6.872e-2640.97Transmembrane protein 41B OS=Homo sapiens GN=TMEM4... [more]
TM41B_XENTR3.411e-2540.69Transmembrane protein 41B OS=Xenopus tropicalis GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YE04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304636 ID=DY304636; Name=DY304636; organism=Citrus clementina; type=EST; length=954bp
CCTTTCTCGTCTTCGAACACAAAGTCATTTTGTCAAAACCAAAACCAAGA
ACCAACCCACACGAAAACAAATAAAAATAAAAATAAAAATAAACAAATAA
ATAAACCCACTGTAATAAAATTTAAAATCCTCACTCTAAATTCACACAAA
TCTCCGAAATATCTAGGGTTTTTCAAAATGGAAATCACTGTCATGTCTTG
CGATTTATTAGTATGATTCTGAACCGTTGATCAAAGCAAGGTTGTTTTTT
TTTTCCCTTTAAAAACAAAAATGGCAGCGGCGAGGAATGTGGCGGCTGGC
GATGGATCGAGAGTGTTCAGAGACGAAGAAGAGAGCGTAAACGGCAAAGT
CAAAGAAGGCGATGAATCGCCGACGGCTAAGAGATTCAAATCGGAACGAT
TTCCGCTCACTCATTGGGAATTCGCCGCGTTTGTCGGCGTATTCTTGCTG
TTTGTTACCGGTCTCTTCTGTATTTACCTCACCATGCCCGCCGCTGACTA
CGGCAAGCTCAAGCTGCCCCGCACCATCGCCGATCTCCGCCTGCTCAAAG
ATAATCTTGCAACGTATGCTCAAGATTACCCAGTGCCGTTCATTATTGGA
TACTGCTCAACATACATATTCATGCAGACATTTATGATTCCAGGAACAAT
TTTCATGTCATTGCTAGCTGGAGCTCTTTTTGGAGTTATTAGAGGCCTTA
TCTTAGTTGTCTTTAATGCCACCGCTGGAGCTTCCTCGTGTTTTTTCTTA
TCTAAGTTGATTGGCAGGCCTTTAGTTAAGTTGGTTTTGGCCTGAAAAGT
AAGATTTTTCCAGGCAGAGATAGCAAAGCGCAGGAAAAAGTTGCTGAATT
ACATGCTCTTTTTGAGAATAACTCCCTCGTTGCCCAACCTTTTTACCAAT
TTTGCATCTCCAATTGTCCAACAAACCATTTCCAAATTTTCTTTTTGGCC
AATT
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