DY304642

Overview
NameDY304642
Unique NameDY304642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length987
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_ECOLI (3-deoxy-D-manno-octulosonic-acid transferase OS=Escherichia coli (strain K12) GN=waaA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.315e-32
Identity = 98/285 (34.39%), Postives = 144/285 (50.53%), Query Frame = 3
Query:   33 LYRALTYGVSPLVYLHLRWRKIRGREHPL---RWPERLGRPSVSRPPGPLIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQWS--GPLFRPXXXXXXXXXXXXAPLSTLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA--------HQQVWMASSIHRGEEKVM*TVHKVLMQKNPNLVTIIVPRLPQ 848
            LY AL Y + PL+++ L W  +RGR+ P    RW ER G       PG ++  H+VS+GE +AAIP+++  R   PDL I +TT T +  E +++     V + + P D+P A++ FL    P  ++I+E ELWPNLI    K  I L + NAR+S +S   ++  G   R             A  +     RF  L A    +  +G LK+         DI     L A           H+ VW+A+S H GEE V+   H+ L+Q+ PNL+ I+VPR P+
Sbjct:    5 LYTALLYLIQPLIWIRL-W--VRGRKAPAYRKRWGERYGFYRHPLKPGGIM-LHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQHVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSAAGYAKLGKFVR----RLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKF---------DISVTPQLAAKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQALLQQFPNLLLILVPRHPE 272          
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_ECOL6 (3-deoxy-D-manno-octulosonic-acid transferase OS=Escherichia coli O6 GN=waaA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.315e-32
Identity = 98/285 (34.39%), Postives = 144/285 (50.53%), Query Frame = 3
Query:   33 LYRALTYGVSPLVYLHLRWRKIRGREHPL---RWPERLGRPSVSRPPGPLIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQWS--GPLFRPXXXXXXXXXXXXAPLSTLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA--------HQQVWMASSIHRGEEKVM*TVHKVLMQKNPNLVTIIVPRLPQ 848
            LY AL Y + PL+++ L W  +RGR+ P    RW ER G       PG ++  H+VS+GE +AAIP+++  R   PDL I +TT T +  E +++     V + + P D+P A++ FL    P  ++I+E ELWPNLI    K  I L + NAR+S +S   ++  G   R             A  +     RF  L A    +  +G LK+         DI     L A           H+ VW+A+S H GEE V+   H+ L+Q+ PNL+ I+VPR P+
Sbjct:    5 LYTALLYLIQPLIWIRL-W--VRGRKAPAYRKRWGERYGFYRHPLKPGGIM-LHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQHVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSAAGYAKLGKFVR----RLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKF---------DISVTPQLAAKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQALLQQFPNLLLILVPRHPE 272          
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_ECO57 (3-deoxy-D-manno-octulosonic-acid transferase OS=Escherichia coli O157:H7 GN=waaA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.315e-32
Identity = 98/285 (34.39%), Postives = 144/285 (50.53%), Query Frame = 3
Query:   33 LYRALTYGVSPLVYLHLRWRKIRGREHPL---RWPERLGRPSVSRPPGPLIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQWS--GPLFRPXXXXXXXXXXXXAPLSTLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA--------HQQVWMASSIHRGEEKVM*TVHKVLMQKNPNLVTIIVPRLPQ 848
            LY AL Y + PL+++ L W  +RGR+ P    RW ER G       PG ++  H+VS+GE +AAIP+++  R   PDL I +TT T +  E +++     V + + P D+P A++ FL    P  ++I+E ELWPNLI    K  I L + NAR+S +S   ++  G   R             A  +     RF  L A    +  +G LK+         DI     L A           H+ VW+A+S H GEE V+   H+ L+Q+ PNL+ I+VPR P+
Sbjct:    5 LYTALLYLIQPLIWIRL-W--VRGRKAPAYRKRWGERYGFYRHPLKPGGIM-LHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQHVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSAAGYAKLGKFVR----RLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKF---------DISVTPQLAAKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQALLQQFPNLLLILVPRHPE 272          
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_HAEIN (3-deoxy-D-manno-octulosonic-acid transferase OS=Haemophilus influenzae GN=waaA PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.525e-27
Identity = 79/286 (27.62%), Postives = 138/286 (48.25%), Query Frame = 3
Query:   36 YRALTYGVSPLVYLHLRWRKIRGREHPLRWPERLG-RPSVSRPPGPLIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQWSGPLFRPXXXXXXXXXXXXAPLSTLQAIRFQLLEASPFTINFSGDLKY-VHEYDESEGDIGSIEDLKASLAHQQVWMASSIHRGEEKVM*TVHKVLMQKNPNLVTIIVPRLPQHGKGNCSMAKLQK 887
            Y +L     PL+   +    ++   +  R  ER G   + S PP   I+ HA S+GE +AA P+++  ++  P L I  TT T +  E +K      V + + PLD+P ++  F+ + +P   +++E ELWPNLI       I   + NAR+S +S  ++     +             A    +   R+  L      +N +G++KY ++  DE    I S+  L      + +W+A+S H GE++++   H+ L+ K PNL+ ++VPR P+       + K +K
Sbjct:    6 YTSLLLICQPLILCFIGLLSVKSPRYRQRLAERYGFYGNASCPPPQGIFIHAASVGEVIAATPLVRQLQQDYPHLSITFTTFTPTGSERVKATFGDSVFHYYLPLDLPFSIHRFINFVQPKLCIVMETELWPNLIHQLFLRNIPFVIANARLSARSAHRYG--KIKAHLQTMWSQISLIAAQDNISGKRYATLGYPKEKLNITGNIKYDLNTNDELLRKIDSLRTLWKQ--DRPIWIAASTHNGEDEIILKSHRALLAKYPNLLLLLVPRHPERFNVVADLLKKEK 287          
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_RICBR (3-deoxy-D-manno-octulosonic-acid transferase OS=Rickettsia bellii (strain RML369-C) GN=waaA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.192e-20
Identity = 81/284 (28.52%), Postives = 139/284 (48.94%), Query Frame = 3
Query:   30 KLYRALTYGVSPLVYLHLRWRKIRGREHPLRWPERLGRPSVSRPPGPLIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQWSGPLFRPXXXXXXXXXXXXAPLSTLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKAS--LAHQQVWMASSIHRGEEKVM*TVHKVLMQKNPNLVTIIVPRLPQHGKG---NC 866
            +LY  L++ + P+ ++ +  R + G+E   R  ER       +    LIW HA S+GE M A+ ++ +  +  P++  L+T+ T S+ +++  +LP    +Q  P+D  +    FL  WKP   + IE ELWP  I  A+K    L L+NAR+S KSF+ W     +                S     +F  L  S  T N  G++K+ +E    +  +   E +K S  L ++QV + +S H  +E+++  + K L ++  +   I++PR P+  K    NC
Sbjct:    3 RLYYFLSFLLLPIYFVIIFIRLLIGKEDIRRVKERFAIGKHRQDNRFLIWIHAASVGESMIALNLVDNISKHFPEVRFLVTSWTQSSAKILSTKLPKIATHQLLPIDNIIFTKIFLNNWKPDLGIFIESELWPGTINEAAKQ-CNLLLVNARMSDKSFESWKKR--KGFFQLIVKNFSEVIVQSERDLQKFNELGISN-TTNL-GNIKFANE----KLPVNQEELIKLSEHLKNKQVILFASTHPEDEEIILPIIKNLKKQVIDCYIILIPRHPERIKSILDNC 277          
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_RICFE (3-deoxy-D-manno-octulosonic-acid transferase OS=Rickettsia felis GN=waaA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.033e-20
Identity = 74/241 (30.71%), Postives = 125/241 (51.87%), Query Frame = 3
Query:  171 LIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQWSGPLFRPXXXXXXXXXXXXAPLSTLQAI-RFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHQQVWMASSIHRGEEKVM*TVHKVLMQKNPNLVTIIVPRLPQHGKG---NCSMAKL 881
            LIW HA S+GE MAA+ +I +  +  PD+  L+T+ T S+ +++  +LP   ++QF P+D  +    FL  W+P+  + IE ELWP  I   ++    L L+NAR+S KSFK W   L R               + + + + +F  L  S   IN  G++K+ +E  +   +   +  L + L ++QV + +S H  +E+V+  + K L ++  +   I++PR P+  K    NC    L
Sbjct:   97 LIWIHAASVGESMAALTLISNISKRYPDIRFLVTSWTNSSAKILTAKLPKIAVHQFLPIDNIIFTRKFLKNWQPNLGIFIESELWPCTINEGARQ-CKLLLVNARISDKSFKAW---LKRKSFFQLILKNFSKIIVQSERDLQKFNELGISD-AINL-GNIKFANE--KLPVNQEELSKLSSHLDNRQVVVFASTHPEDEEVILPIIKNLKEQFLDCYIILIPRHPERVKSIIDNCKSHNL 329          
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_RICTY (3-deoxy-D-manno-octulosonic-acid transferase OS=Rickettsia typhi GN=waaA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.248e-19
Identity = 69/240 (28.75%), Postives = 119/240 (49.58%), Query Frame = 3
Query:  171 LIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQWSGPLFRPXXXXXXXXXXXXAPLSTLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHQQVWMASSIHRGEEKVM*TVHKVLMQKNPNLVTIIVPRLPQHGK---GNCSMAKL 881
            L+W HA S+GE M ++ +I +  +L P++  L+T+ T ++ +++  +LP    +QF P+D  +    FL  WKP   + IE ELWP +I   +KH   L L+NAR+S KSFK W     +                S     +F  L  S   +N  G++K+ +E  +   +   +  L   L +++V + +S H  +E+V+  +   L ++  +   I++PR P+  K    NC    L
Sbjct:   94 LVWIHAASVGEVMTSLTLIHNICKLAPNVRFLITSWTNTSAKILSTKLPKIATHQFLPIDNVIFTRKFLSNWKPDLGIFIESELWPCIINEGAKH-CKLLLVNARISNKSFKTWLKR--KKFFQLIIKNFSKIIVQSECDLQKFNALGISD-AMNL-GNIKFANE--KLLVNQEKLSKLSLHLDNRRVVVFASTHPEDEEVILPIINNLKEQFVDCYIILIPRHPERVKSILNNCKCHNL 326          
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_RICCN (3-deoxy-D-manno-octulosonic-acid transferase OS=Rickettsia conorii GN=waaA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.541e-19
Identity = 71/255 (27.84%), Postives = 118/255 (46.27%), Query Frame = 3
Query:  171 LIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQWSGPLFRPXXXXXXXXXXXXAPLSTLQAIRFQLLEASPFTINFSGDLKYVHEYDESEG-DIGSIE--------------DLKASLAHQQVWMASSIHRGEEKVM*TVHKVLMQKNPNLVTIIVPRLPQHGKG---NCSMAKL 881
            LIW +A S+GE M A+ +I +  +  PD+  L+T+ T S+ +++  +LP   ++QF P+D  +    FL  W+P   + IE ELWP  I   +K    L L+NAR+S KSFK W                     L      +  L   S   +    DL+  +E   S+  ++G+I+               L   L +++V + +S H  +E+V+  + K L ++  +   I++PR P+  K    NC    L
Sbjct:   97 LIWINAASIGESMVALTLIHNISKRYPDVRFLVTSWTNSSAKILTAKLPKIAVHQFLPIDNIIFTRKFLRNWQPDLGIFIESELWPCTINEGAKQ-CKLLLVNARISDKSFKAW---------------------LQRKSFFQLILKNCSKIIVQSERDLQKFNELGVSDAVNLGNIKFANEKLPVNQEELSKLSLHLDNKRVVLFASTHPEDEEVILPIIKNLKEQFLDCYIILIPRHPERVKSIIDNCKSHNL 329          
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_RICPR (3-deoxy-D-manno-octulosonic-acid transferase OS=Rickettsia prowazekii GN=waaA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.239e-18
Identity = 68/238 (28.57%), Postives = 122/238 (51.26%), Query Frame = 3
Query:  171 LIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQWSGPLFRPXXXXXXXXXXXXAPLSTLQAI-RFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHQQVWMASSIHRGEEKVM*TVHKVLMQKNPNLVTIIVPRLPQHGKGNCSMAKL 881
            L+W HA S+GE M A+ +I +  +L P++  L+T+ T ++ +++  +LP    +QF P+D  +    FL  W+P   + IE ELWP  I   +K+   L L+NAR+S KSFK W   L R               + + + + +F  L  S   +N  G++K+ +E  +   +   +  L   L +++V + +S H  +E+V+  +   L ++  +   I++PR P+  K   +  KL
Sbjct:   92 LVWIHAASVGEVMTALTLIHNISKLAPNVRFLITSWTNASAKILSTKLPKIATHQFLPIDNVIFTRKFLRNWQPDLGIFIESELWPCTINEGAKY-CKLLLINARISNKSFKAW---LKRKRFFQLIIKNFSKIIVQSERDLQKFNALGISD-AMNL-GNIKFANE--KLLVNQEKLSKLILHLDNRRVLVFASTHPEDEEVILPIINNLKEQFIDCYIILIPRHPERIKSIINNCKL 321          
BLAST of DY304642 vs. ExPASy Swiss-Prot
Match: KDTA_CHLPN (3-deoxy-D-manno-octulosonic-acid transferase OS=Chlamydia pneumoniae GN=waaA PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.555e-11
Identity = 45/161 (27.95%), Postives = 72/161 (44.72%), Query Frame = 3
Query:   33 LYRALTYGVSPLVYLHLRWRKIRGREHPLRWPERLGRPSVSRPPGPLIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNR-LPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGELWPNLIMGASKHGIALGLLNARVSTKSFKQW 512
            LY+ L YG         +++K       L+ P   G        GPL+WFH  S+GE    +PV++      P    L+T+ T    +V     +P G      PLD  + + + +   +PS +V  EG+ W N I  A + G    ++N R+S  S K++
Sbjct:   30 LYKMLVYG---------KYKKSLAVRFGLKKPHVPGE-------GPLVWFHGASVGEVRLLLPVLEKFCEEFPGWRCLVTSCTELGVQVASQVFIPMGATVSILPLDFSIIIKSVVAKLRPSLVVFSEGDCWLNFIEEAKRIGATTLVINGRISIDSSKRF 174          
The following BLAST results are available for this feature:
BLAST of DY304642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
KDTA_ECOLI2.315e-3234.393-deoxy-D-manno-octulosonic-acid transferase OS=Es... [more]
KDTA_ECOL62.315e-3234.393-deoxy-D-manno-octulosonic-acid transferase OS=Es... [more]
KDTA_ECO572.315e-3234.393-deoxy-D-manno-octulosonic-acid transferase OS=Es... [more]
KDTA_HAEIN6.525e-2727.623-deoxy-D-manno-octulosonic-acid transferase OS=Ha... [more]
KDTA_RICBR1.192e-2028.523-deoxy-D-manno-octulosonic-acid transferase OS=Ri... [more]
KDTA_RICFE2.033e-2030.713-deoxy-D-manno-octulosonic-acid transferase OS=Ri... [more]
KDTA_RICTY2.248e-1928.753-deoxy-D-manno-octulosonic-acid transferase OS=Ri... [more]
KDTA_RICCN8.541e-1927.843-deoxy-D-manno-octulosonic-acid transferase OS=Ri... [more]
KDTA_RICPR4.239e-1828.573-deoxy-D-manno-octulosonic-acid transferase OS=Ri... [more]
KDTA_CHLPN6.555e-1127.953-deoxy-D-manno-octulosonic-acid transferase OS=Ch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YE10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304642 ID=DY304642; Name=DY304642; organism=Citrus clementina; type=EST; length=987bp
TGATGCCTATGGGTGCTGCGATAGTGTACAAGCTGTACAGAGCACTAACC
TACGGTGTATCACCCTTGGTGTACCTTCACTTACGCTGGCGCAAAATCCG
AGGTCGCGAGCACCCTCTCCGCTGGCCTGAGCGTCTGGGTCGCCCCTCCG
TGTCAAGGCCGCCGGGCCCACTCATCTGGTTCCACGCCGTCTCTTTAGGT
GAAGGAATGGCTGCGATTCCTGTTATCAAGCATTGCCGCCGCTTGAGGCC
TGATTTACACATTTTGATGACTACCACCACCTACTCTGCTTTTGAAGTGA
TAAAGAATCGGCTTCCAAGTGGTGTTATATATCAGTTTTGCCCACTTGAT
ATTCCCGTTGCTGTGGATGCTTTCCTTGGCTATTGGAAGCCAAGTGCAAT
CGTAATAATAGAGGGTGAACTGTGGCCTAATCTTATTATGGGTGCTTCAA
AACATGGTATTGCATTGGGGTTGCTAAATGCTCGGGTGTCCACTAAATCC
TTTAAACAATGGTCAGGACCTTTGTTTCGTCCACTGATATCATTATTGCT
GTCAAAATTTTCCTTGATTGCCCCTTTGAGCACCTTGCAGGCAATTCGCT
TTCAGCTACTAGAAGCCTCACCTTTTACCATCAACTTTTCTGGTGACTTG
AAATATGTACATGAATATGATGAATCTGAGGGAGATATAGGAAGTATAGA
AGATCTGAAGGCATCACTTGCCCACCAGCAGGTCTGGATGGCTTCTTCCA
TACACAGGGGTGAAGAAAAAGTAATGTAAACAGTTCACAAAGTTCTCATG
CAAAAGAACCCTAATTTGGTTACTATCATTGTGCCTCGACTTCCCCAACA
TGGAAAAGGAAATTGCTCCATGGCAAAATTGCAAAAAGAAAGGGGAATTT
GAACCTTTGAGGTCTCGGCATGGAAAAGCTAAAGCCACAAACAAATGGAA
AATGTGGGGAAACCACATTAGGTGAATTGAAGACCGT
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