DY304646

Overview
NameDY304646
Unique NameDY304646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length977
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: PTN20_MOUSE (Tyrosine-protein phosphatase non-receptor type 20 OS=Mus musculus GN=Ptpn20 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.200e-18
Identity = 70/206 (33.98%), Postives = 106/206 (51.46%), Query Frame = 1
Query:  271 LQNKSR-EISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNICIVTKWIKTTE--TALVMRNLEVNYKKSEEPPMVCFAHSVP*RA*PWSSPGHSWLFVKFVK 876
            LQ K   +I +EF  L+   + P +   G T+     N  KNRY DILP+D  RV L + KDY       INAS I   + E+   +IATQGPLP T EDFW+MV++ +C VI M+TR ++   ++KC  Y+      P EF +  +  +    T+  T  V + ++ +  KS+     C  H    +     +P  +  F+K+V+
Sbjct:  157 LQKKEELDIIREFLELEQMTL-PDDFNSGNTLQ----NRDKNRYRDILPYDSTRVPLGKNKDY-------INASYIRIVNHEEEYFYIATQGPLPETIEDFWQMVLENNCNVIAMITREIE-CGVIKCYSYWPISLKEPLEFEHFSVFLETFHVTQYFTVRVFQIVKKSTGKSQ-----CVKHLQFTKWPDHGTPASADFFIKYVR 344          
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: PTN20_RAT (Tyrosine-protein phosphatase non-receptor type 20 OS=Rattus norvegicus GN=Ptpn20 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.179e-18
Identity = 76/228 (33.33%), Postives = 111/228 (48.68%), Query Frame = 1
Query:  271 LQNKSR-EISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNICIVTKWIKTTETALVMRNLEVNYKKSEEPPMVCFAHSVP*RA*PWSSPGHSWLFVKFVKEF*ILPPQFWPNSGGIAMAGFWEK 948
            LQ K   +I +EF  L+   I P +   G  +     N  KNRY DILP+D  RV L + KDY       INAS I   + E+   +IATQGPLP T EDFW+MV++ +C VI M+TR ++   ++KC  Y+      P EF +  ++ +  + T+   V+R  ++  KKS                   +   HS   ++F+K         WP+ G  A A F+ K
Sbjct:  152 LQKKEELDIIREFLELE-EMIPPDDFKSGYELQ----NRDKNRYRDILPYDSTRVPLGKNKDY-------INASYIRIVNHEEEYFYIATQGPLPDTIEDFWQMVLENNCNVIAMITREIEG-GVIKCCSYWPVSLKEPLEFKHFHVLLENFQITQ-YFVIRIFQI-VKKS-------------------TGKSHSVKHLQFIK---------WPDHGTPASADFFIK 336          
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: PTN4_HUMAN (Tyrosine-protein phosphatase non-receptor type 4 OS=Homo sapiens GN=PTPN4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.432e-18
Identity = 57/140 (40.71%), Postives = 81/140 (57.86%), Query Frame = 1
Query:  379 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNICI-VTKWIKTTETALVMRNLEV-NYKKSEEPPM 792
            N+SKNRY DI P+D  RV+LK  +DY  A   YIN  + S+S    ++Q+IA QGPLPHT  DFW+M  +    ++VMLT  V+  + VKC  Y+    G   +G  C  VT   +   TA + R + + N +K+E  P+
Sbjct:  679 NISKNRYRDISPYDATRVILKGNEDYINA--NYINMEIPSSSI---INQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGR-VKCHQYWPEPTGSSSYG--CYQVTCHSEEGNTAYIFRKMTLFNQEKNESRPL 810          

HSP 2 Score: 23.0978 bits (48), Expect = 4.432e-18
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  779 KNHLWSVLHIQYPEGPDPGVPRDT 850
            KN    +  IQY   PD GVP D+
Sbjct:  804 KNESRPLTQIQYIAWPDHGVPDDS 827          
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: PTPRN_MOUSE (Receptor-type tyrosine-protein phosphatase-like N OS=Mus musculus GN=Ptprn PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.620e-17
Identity = 55/141 (39.01%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  250 LSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE 672
            L++ ++ L+N+ R +++E+  L A + +P+     C  A D  N+ KNR+ D LP+D  R+ LK   +  P+   YINAS I      ++  +IATQGPL HT  DFW+MV +  C VIVMLT LV++  + +C  Y+  E
Sbjct:  696 LAYMEDHLRNRDR-LAKEWQALCAYQAEPNT----CAAAQDESNIKKNRHPDFLPYDHARIKLKV--ESSPSRSDYINASPI-IEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIVMLTPLVED-GVKQCDRYWPDE 827          
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: PTP1_DICDI (Tyrosine-protein phosphatase 1 OS=Dictyostelium discoideum GN=ptpA1-1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.620e-17
Identity = 77/245 (31.43%), Postives = 120/245 (48.98%), Query Frame = 1
Query:   97 RPRCRRKSAMAASSAGNHSTPHNTKPFEFSAVDFPPRISLTADQYNHCS------EALSFFKEKLQNKSR---EISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREF-----GNICIVT------KWIKTTETALVMRNLEVNYK 771
            RP   R ++  + S+ +HS+         S    P     ++  YN+ S      E +      L+N  +   +I +EF  L+ S + PSE + G        N SKNRYT+ILP +  RV LK+ +D   +   YINA+ I  +  +   QFI TQGPLP+T  DFW MV +  C +IVML+R  +N + +KC  Y+  + G  +F     GN    T      + I+  E  ++ RN+ + ++
Sbjct:   27 RPLPTRSNSSISLSSSSHSSFSRMG----SLGSLPTNSGSSSPYYNNSSFDLVDEERIKSSIYNLKNHIKCIHKIKEEFRLLEES-VGPSETSEGDKKH----NTSKNRYTNILPVNHTRVQLKKIQDKEGS--DYINANYIDGAYPK---QFICTQGPLPNTIADFWRMVWENRCRIIVMLSRESENCR-IKCDRYWPEQIGGEQFSIYGNGNEVFGTYSVELVEVIQDPEREIITRNIRLTFE 256          
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: PTP1_CAEEL (Tyrosine-protein phosphatase 1 OS=Caenorhabditis elegans GN=ptp-1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 7.881e-17
Identity = 75/237 (31.65%), Postives = 109/237 (45.99%), Query Frame = 1
Query:  199 PPRISLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTS--SSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNICIVTKWIKTTETA-LVMRNLEVNYKKSEEPPMVCFA-------HSVP*RA*PWSSPGHSWLFVKFVKE 879
            P R++ +    +  S++L    + L   S ++   F  L   R KP      C +     NL+KNRY D+ P+D  RV L+        +  YINA+ ++    SS  V+++IA QGPL HT  DFW MV + HC  IVMLT + +  + VKC  Y+      +E+G + I  K IK  +T     R   +  + S E   V          H VP        P H   F++FV E
Sbjct:  724 PARVADSVPNSDKLSKSLQLLADSLN--SGKVVDHFEMLY--RKKPGMSMNICRLT---ANLAKNRYRDVCPYDDTRVTLQASP-----SGDYINANYVNMEIPSSGIVNRYIACQGPLAHTSSDFWVMVWEQHCTTIVMLTTITERGR-VKCHQYWPRVFETQEYGRLMI--KCIKDKQTTNCCYREFSIRDRNSSEERRVTQMQYIAWPDHGVP------DDPKH---FIQFVDE 936          
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: CD45_HUMAN (Leukocyte common antigen OS=Homo sapiens GN=PTPRC PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 7.887e-17
Identity = 60/182 (32.97%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  235 HCSEALSFFKEKLQNKSREISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQA-EDGPREFGNICIVTKWIKTTETALVMRNLEVNYKK 774
            H    L  +K K+ ++ R    EF  +     K P + AR         N +KNRY DILP+D NRV L +      A   YINAS I      +  ++IA QGP   T +DFW M+ +    VIVM+TR  +  +  KC +Y+ + E+G R FG++ +     K     ++ +   VN K+
Sbjct:  632 HADILLETYKRKIADEGRLFLAEFQSIPRVFSKFPIKEAR------KPFNQNKNRYVDILPYDYNRVELSEING--DAGSNYINASYIDGFKEPR--KYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRN-KCAEYWPSMEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKE 802          

HSP 2 Score: 25.409 bits (54), Expect = 7.887e-17
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 2
Query:  797 VLHIQYPEGPDPGVPRD 847
            V HIQ+   PD GVP D
Sbjct:  809 VTHIQFTSWPDHGVPED 825          
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: PTN4_MOUSE (Tyrosine-protein phosphatase non-receptor type 4 OS=Mus musculus GN=Ptpn4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.744e-16
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  379 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFG 693
            N+SKNRY DI P+D  RV+LK  +DY  A   YIN  + S+S    ++Q+IA QGPLPHT +DFW+M+ +    ++VMLT  V+  + VKC  Y+        +G
Sbjct:  679 NISKNRYRDISPYDATRVLLKGNEDYINA--NYINMEIPSSSI---INQYIACQGPLPHTCKDFWQMIWEQGSSMVVMLTTQVERGR-VKCHQYWPEPSESSSYG 777          

HSP 2 Score: 24.2534 bits (51), Expect = 1.744e-16
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  779 KNHLWSVLHIQYPEGPDPGVPRDT 850
            KN    +  IQY   PD GVP D+
Sbjct:  804 KNESRQLTQIQYTAWPDHGVPDDS 827          
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: PTN18_HUMAN (Tyrosine-protein phosphatase non-receptor type 18 OS=Homo sapiens GN=PTPN18 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.293e-16
Identity = 56/163 (34.36%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  379 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNICIVTKWIKTTETALVMRNLEVNYKKSEEPPMVCFAHSVP*RA*PWSSPGHSWLFVK 867
            N+ KNRY D+LP+D+ RV+L   ++       YIN + I          +IATQGPLPHT  DFW +V ++   VI+M  R ++N +  +C  Y+  E  P + G  CI     K     +++R L+V ++K           S P R  P SSP H    V+
Sbjct:   56 NVRKNRYKDVLPYDQTRVILSLLQE--EGHSDYINGNFIRGVDGSLA--YIATQGPLPHTLLDFWRLVWEFGVKVILMACREIENGRK-RCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRTLKVTFQKESRSVYQLQYMSWPDRGVP-SSPDHMLAMVE 212          
BLAST of DY304646 vs. ExPASy Swiss-Prot
Match: PTPRN_RAT (Receptor-type tyrosine-protein phosphatase-like N OS=Rattus norvegicus GN=Ptprn PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.911e-16
Identity = 54/141 (38.30%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  250 LSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE 672
            L++ ++ L+N+ R +++E+  L A + +P+     C  A    N+ KNR+ D LP+D  R+ LK   +  P+   YINAS I      ++  +IATQGPL HT  DFW+MV +  C VIVMLT LV++  + +C  Y+  E
Sbjct:  700 LAYMEDHLRNRDR-LAKEWQALCAYQAEPNT----CATAQGEGNIKKNRHPDFLPYDHARIKLKV--ESSPSRSDYINASPI-IEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIVMLTPLVED-GVKQCDRYWPDE 831          
The following BLAST results are available for this feature:
BLAST of DY304646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
PTN20_MOUSE3.200e-1833.98Tyrosine-protein phosphatase non-receptor type 20 ... [more]
PTN20_RAT4.179e-1833.33Tyrosine-protein phosphatase non-receptor type 20 ... [more]
PTN4_HUMAN4.432e-1840.71Tyrosine-protein phosphatase non-receptor type 4 O... [more]
PTPRN_MOUSE4.620e-1739.01Receptor-type tyrosine-protein phosphatase-like N ... [more]
PTP1_DICDI4.620e-1731.43Tyrosine-protein phosphatase 1 OS=Dictyostelium di... [more]
PTP1_CAEEL7.881e-1731.65Tyrosine-protein phosphatase 1 OS=Caenorhabditis e... [more]
CD45_HUMAN7.887e-1732.97Leukocyte common antigen OS=Homo sapiens GN=PTPRC ... [more]
PTN4_MOUSE1.744e-1643.81Tyrosine-protein phosphatase non-receptor type 4 O... [more]
PTN18_HUMAN2.293e-1634.36Tyrosine-protein phosphatase non-receptor type 18 ... [more]
PTPRN_RAT3.911e-1638.30Receptor-type tyrosine-protein phosphatase-like N ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YE15RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304646 ID=DY304646; Name=DY304646; organism=Citrus clementina; type=EST; length=977bp
AAACCCTTTCAAACACAACGCAATCATCCCGCAAAAATCTGCAGCCAGCC
TACAAGAGGCAGAAACACGAGGAGGCTGGGAAATCTCATTTCAAAGCGCC
CTCGGTGTCGCCGGAAATCGGCCATGGCCGCTTCCTCCGCCGGCAACCAC
TCCACTCCTCATAACACGAAACCTTTTGAATTCTCAGCCGTTGATTTTCC
TCCCAGAATCTCGCTCACGGCCGATCAGTACAATCACTGCTCTGAAGCTC
TCAGTTTCTTCAAAGAGAAGCTTCAGAACAAGTCCCGAGAAATCTCCCAA
GAATTTGCCCGCTTGCAGGCTAGTCGAATTAAACCATCTGAAATGGCGCG
AGGCTGCACCGTTGCTCTTGATGGCGTCAATTTGAGCAAGAATCGATATA
CAGATATCTTGCCTTTTGACAAAAATAGGGTTGTTCTGAAGCAGTGCAAG
GATTATAGACCGGCTGCTAGAGGGTATATCAATGCCAGCTTAATCTCGAC
ATCTTCCTCTGAAAAAGTTTCTCAGTTCATAGCCACACAAGGTCCACTAC
CTCACACTTATGAGGACTTCTGGGAGATGGTCATACAGTATCACTGCCCT
GTGATTGTGATGCTTACTCGGTTGGTCGACAATTACAAGATGGTAAAATG
TGGAGATTACTTTCAAGCTGAAGATGGTCCTAGAGAATTTGGTAATATAT
GTATTGTGACTAAATGGATAAAAACTACAGAAACTGCATTGGTAATGCGG
AACCTAGAGGTGAACTACAAAAAGTCGGAAGAACCACCTATGGTCTGTTT
TGCACATTCAGTACCCTGAAGGGCCTGACCCTGGAGTTCCCCGGGACACT
CCTGGCTGTTCGTGAAATTTGTGAAAGAATTTTAAATTTTACCCCCCCAA
TTTTGGCCCAATAGTGGGGGCATTGCAATGGCAGGGTTTTGGGAAAAACT
TGGGGCCAACTGGCCAAATTCCAAAAA
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