DY304649

Overview
NameDY304649
Unique NameDY304649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.653e-64
Identity = 128/234 (54.70%), Postives = 154/234 (65.81%), Query Frame = 3
Query:  219 APSLFTNI-------IDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVAST-ARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFGFKFNPLFFPHLTFSRF 893
            A +LFT +       ID P  PSVDPKHV + NFAPV DEL PT+C ++ G LP SL G YIRNGPNPQ +PRGP H F+GDGMLH++++  G+A   SRYVKTYKY +E+  G  + PNVFSGF G+   V   A T ARVL G  N   G GLANT            GESDLPY ++ T  GDIET+GR+DFD +L  SMTAHPKTD  T ETF F++ P+  P LT+ RF
Sbjct:   82 ATALFTTVEDVINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPV-PPFLTYFRF 314          
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.144e-41
Identity = 84/215 (39.07%), Postives = 123/215 (57.21%), Query Frame = 3
Query:  249 RPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFGFKFNPLFFPHLTFSRF 893
            +PL  +VDP+H  +GN+APV E        VDGK+PD + G Y+RNG NP   P    H F+GDGM+H+++++ G A YS R+ +T +   E+  G  IFP      +G   + + +   AR L G +N K G G+AN              E DLPY ++ T  GD+ET+GR+DFD +L ++M AHPK D  TKE F   ++ +  P+L + +F
Sbjct:  101 KPLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFALSYDVVKKPYLKYFKF 315          
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.019e-38
Identity = 80/223 (35.87%), Postives = 123/223 (55.16%), Query Frame = 3
Query:  225 SLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFGFKFNPLFFPHLTFSRF 893
            +L ++  D PL  + DP+    GN++PV E        V+G +PD + G YIRNG NP   P    H F+GDGM+H+++++ G A Y+ R+ KT +   E+  G  +FP      +G   + + +   AR L G +N + G G+AN              E DLPY +K T+ GD++T+GR+DFD +L ++M AHPK D  TKE     ++ +  P+L + RF
Sbjct:   86 ALISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLKSAMIAHPKLDPVTKELHALSYDVVKKPYLKYFRF 308          
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.670e-38
Identity = 81/214 (37.85%), Postives = 117/214 (54.67%), Query Frame = 3
Query:  252 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFGFKFNPLFFPHLTFSRF 893
            PL  + DP     GNFAPV+E        V GKLPDS+ G Y+RNG NP H P    HFF+GDGM+H+++   G A Y+ R+ +T ++  ER  G  +FP      +G   + + +   AR   G V+   G G+AN              E DLPY ++ T  GD++T+GR+DFD +L ++M AHPK D  + E F   ++ +  P+L + RF
Sbjct:  112 PLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSYDVVSKPYLKYFRF 325          
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.493e-37
Identity = 87/271 (32.10%), Postives = 133/271 (49.08%), Query Frame = 3
Query:  126 QNIPFRSSQKPKICAPIQSLMGTNSSYNTKSAPSLFTNII------------DRPLHP---SVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFGFKFNPLFFPHLTFSRF 893
            Q+  F+     K+C  + +L+   ++ N K  P   T  +            +R  HP   + DP     GNF PV E        V G +P+ + G Y+RNG NP H P    H F+GDGM+H+++   G   Y+ R+ +T +   ER+ G  +FP      +G + + + +    R L G V+   G G+AN              E DLPY +K T+ GD+ET GR+DFD +L ++M AHPK D  T+E F   ++ +  P+L + RF
Sbjct:  115 QSPTFKPPSWKKLCNDVTNLIPKTTNQNPKLNPVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPKIDPETRELFALSYDVVSKPYLKYFRF 385          
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.223e-36
Identity = 92/273 (33.70%), Postives = 133/273 (48.72%), Query Frame = 3
Query:  135 PFRSSQKPKICAPIQSLMGTNSSY-NTKSAPSLFTNIID-------------RPLHPSVDPKHVFTGNFAPVDELGPTECPV-----VDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAI-YSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFGFKFNPLFFPHLTFSRF 893
            PF+    P + +P+ S +    +Y N      L   ++D             RPL    DP    +GNFAPV+E     CPV     V G++P  L G YIRNG NP   P    H F+GDGM+H++ +     + YS RY KT +   E   G  +FP      +G   + +    TAR  +G V+  +G G+AN              E DLPY +K   +GD+ET+GR+ FD+++ +S+ AHPK D TT +     +N L  PHL + +F
Sbjct:   37 PFKIPTLPDLTSPVPSPVKLKPTYPNLNLLQKLAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPVNE-----CPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPKVDATTGDLHTLSYNVLKKPHLRYLKF 304          
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.089e-35
Identity = 89/228 (39.04%), Postives = 123/228 (53.95%), Query Frame = 3
Query:  216 SAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKE--TFGFKFNPLFFPHLTF 884
            SA  L    +    H    P H  +GNFAPV DE  P     V G LP+ L G ++R GPNP+ MP    H+F+GDGM+H M++  G+A Y+SRYVKT + K E    G  F  +    GF+GL  MVQ     A++ +  +++  G G  NT             E+D PY++K   +GD++TLG  D+D+ L  S TAHPK D  T E  TFG+   P   P++T+
Sbjct:   29 SAVDLIEKAVVYLFHDKSKPCHYLSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLF-MVQMQLLRAKLKV--IDVSYGVGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLSHSFTAHPKVDPFTDEMFTFGYAHTP---PYVTY 250          
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.016e-34
Identity = 74/214 (34.58%), Postives = 113/214 (52.80%), Query Frame = 3
Query:  252 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFGFKFNPLFFPHLTFSRF 893
            PL  + DPK    GNFAPV E    +   V GK+P  + G Y+RNG NP + P    HFF+GDGM+H+++ + G A Y+ R+ +T +   E+  G  +FP      +G   + + +   AR L   V+   G G+AN              E DLPY ++ T  GD+ T+GR+DF+ +L ++M AHPK D    +     ++ +  P+L + RF
Sbjct:  131 PLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNGQLNSTMIAHPKLDPVNGDLHALSYDVVQKPYLKYFRF 344          
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.720e-34
Identity = 86/228 (37.72%), Postives = 123/228 (53.95%), Query Frame = 3
Query:  210 TKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFGFKFNPLFFPHLTF 884
            T  A  L   II +  + S  P H  +GNFAPV DE  P +   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+VKT ++K E    G  F  +    G +GL+ MV      A++ +  +++  G G ANT             E D PY IK   +GD++TLG  D+D+ L  + TAHPK D  T E F F ++    P++T+
Sbjct:   23 TSKAVDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLL-MVNMQMLRAKLKI--LDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHT-APYVTY 246          
BLAST of DY304649 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.688e-33
Identity = 81/221 (36.65%), Postives = 116/221 (52.49%), Query Frame = 3
Query:  228 LFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKE--TFGFKFNPLFFPHLTF 884
            L   ++ + L+ S  P H  TGNF PV E  PT+   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+V+T + K E   G   F  +     GL  ++       R  +  ++L  G G  NT             E+D PY IK   +GD++TLG  D+D+ L  S TAHPK D  T E  +FG+   P   P++T+
Sbjct:   32 LLEKLLVKFLYDSSLPHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKI-GDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFSFGYAHTP---PYITY 248          
The following BLAST results are available for this feature:
BLAST of DY304649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD4_ARATH3.653e-6454.70Probable carotenoid cleavage dioxygenase 4, chloro... [more]
NCED5_ARATH1.144e-4139.07Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED2_ARATH2.019e-3835.879-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED3_ARATH7.670e-3837.859-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED9_ARATH6.493e-3732.109-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED6_ARATH3.223e-3633.709-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD_CROSA2.089e-3539.04Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
NCED1_PHAVU3.016e-3434.589-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
CCD1_PEA6.720e-3437.72Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PHAVU5.688e-3336.65Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YE18RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304649 ID=DY304649; Name=DY304649; organism=Citrus clementina; type=EST; length=944bp
AAAAAAAACATCATCCACTCTACATATCTACCAAAAGAATGGATCTCATG
AATTACTTATCCTTAAAGATATCATACAATTCTCCACCAAAACCAAAGTT
CACATATTACAATCACATCAACGAACAAAATATCCCATTCCGTTCTTCTC
AAAAGCCAAAAATATGTGCACCCATACAATCTTTAATGGGAACAAATTCA
TCCTACAACACCAAATCCGCGCCATCATTGTTTACAAACATTATTGATCG
TCCTCTTCATCCTTCTGTTGATCCAAAGCATGTCTTCACCGGAAACTTTG
CTCCGGTGGACGAGCTTGGCCCGACTGAGTGCCCGGTGGTTGATGGCAAG
CTTCCGGACTCTCTAACCGGCACGTACATCCGAAACGGACCAAACCCACA
GCACATGCCCCGTGGCCCTCTCCACTTCTTTGAAGGTGATGGCATGCTTC
ACTCAATGCAATTATCTAAAGGGCGTGCAATTTACAGTAGCCGCTATGTC
AAGACTTACAAGTACAAGCTCGAGAGAGATGCCGGTGGCCAAATTTTCCC
CAACGTCTTCTCAGGATTTTATGGGCTTGTGGATATGGTTCAATGTGTTG
CATCGACAGCAAGAGTGTTGATGGGTCACGTAAATCTCAAGAAAGGATTT
GGTTTGGCCAATACAAGTCTTGCTTTCTTTTCGTCTAAGCTTCTTGCTCT
TGGTGAGTCCGATTTGCCCTACATTATAAAATGTACTCGAGAAGGCGACA
TTGAGACTTTAGGGAGATGGGATTTTGATGAAGAATTATTTGCAAGCATG
ACTGCGCATCCAAAGACAGACATGACCACAAAGGAGACTTTTGGCTTCAA
ATTTAACCCCCTTTTTTTCCCTCATCTTACATTCTCCCGTTTTGGAGGCA
ATGGTGGTAAACCAAAAGGAAGTGGCCAAAATTGGTCCATAAAT
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