DY304651

Overview
NameDY304651
Unique NameDY304651
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RCL1_ARATH (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.532e-57
Identity = 105/149 (70.47%), Postives = 131/149 (87.92%), Query Frame = 1
Query:   31 KRLKGSYSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGVPSERLELGSE 477
            K++KGS S RQRL+LSTL+STP+ ID+IRAD+T+PGLRPHE++LLRLLE + DD VV+INETGT L+YKPG ++GG+NLVH C +SRSIGY+LEPL+L+GLF KKP+SI L GITNDP+D SVDTFRSTTL +++RFGVP+E LEL  E
Sbjct:    5 KKMKGSQSFRQRLLLSTLSSTPISIDEIRADETIPGLRPHEVNLLRLLEIVTDDAVVDINETGTRLKYKPGTIVGGKNLVHSCSLSRSIGYYLEPLLLLGLFGKKPLSIRLKGITNDPRDASVDTFRSTTLNIIKRFGVPAEDLELKIE 153          
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RCL1_DICDI (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Dictyostelium discoideum GN=rcl1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.648e-35
Identity = 68/138 (49.28%), Postives = 100/138 (72.46%), Query Frame = 1
Query:   34 RLKGSYSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGV 447
            + +GS   RQR++ STL+   + I +IR +D  PGLR +E S LRL+++I +   +EIN TGT++ Y PGI++GG+ + H+CG  R IGYF+E LI +G FAK P+ ITL GITN+  D ++DT R+TTLP++R+FG+
Sbjct:    3 KFQGSTHFRQRIICSTLSGKAIRITNIRDEDEKPGLRDYEASFLRLVDKITNGSKIEINSTGTQITYIPGIIIGGKGITHECGTVRGIGYFVEALICLGPFAKAPLDITLNGITNNDIDLTIDTIRTTTLPIIRKFGI 140          
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RCL1_HUMAN (RNA 3'-terminal phosphate cyclase-like protein OS=Homo sapiens GN=RCL1 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 2.380e-34
Identity = 75/142 (52.82%), Postives = 97/142 (68.31%), Query Frame = 1
Query:   43 GSYSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGVPSERLEL 468
            G   LRQRLVLSTL+  PV I  IRA D  PGLR  E S +RLL++I +   +EIN+TGT L Y+PG++ GG ++ HDC V R IGY+LE L+ +  F K P+ I L G+TND  DPSVD  ++T LPLL++FG+  E  EL
Sbjct:   12 GCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGG-SVEHDCSVLRGIGYYLESLLCLAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFEL 152          
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RCL1_MOUSE (RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus GN=Rcl1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.108e-34
Identity = 75/142 (52.82%), Postives = 97/142 (68.31%), Query Frame = 1
Query:   43 GSYSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGVPSERLEL 468
            G   LRQRLVLSTL+  PV I  IRA D  PGLR  E S +RLL++I +   +EIN+TGT L Y+PG++ GG ++ HDC V R IGY+LE L+ +  F K P+ I L G+TND  DPSVD  ++T LPLL++FG+  E  EL
Sbjct:   12 GCNFLRQRLVLSTLSGRPVKIRRIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGG-SVEHDCSVLRGIGYYLEALLCLAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFEL 152          
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RCL1_BOVIN (RNA 3'-terminal phosphate cyclase-like protein OS=Bos taurus GN=RCL1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.108e-34
Identity = 74/142 (52.11%), Postives = 97/142 (68.31%), Query Frame = 1
Query:   43 GSYSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGVPSERLEL 468
            G   LRQRLVLSTL+  PV I  IRA D  PGLR  E S +RLL+++ +   +EIN+TGT L Y+PG++ GG ++ HDC V R IGY+LE L+ +  F K P+ I L G+TND  DPSVD  ++T LPLL++FG+  E  EL
Sbjct:   12 GCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKVTNGSRIEINQTGTTLYYQPGLLYGG-SMEHDCSVLRGIGYYLESLLCLAPFMKHPLRIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFEL 152          
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RCL1_SCHPO (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Schizosaccharomyces pombe GN=SPAC12G12.06c PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.481e-32
Identity = 67/146 (45.89%), Postives = 102/146 (69.86%), Query Frame = 1
Query:   31 KRLKGSYSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGVPSERLEL 468
            KR KG   L  RLVL+TL+ TP+ ++ I  D+  PG++ +++S LRLLE++ +  V+EI+ TGT   Y+PG ++GGR +VHDC  ++ IGYFLEP++++ LFAK P S+TLTG+T+  +D  VD  R++ LP L++     + LEL
Sbjct:    7 KRFKGCEYLTHRLVLATLSGTPIRVEGIYPDEADPGVKDYQVSFLRLLEKLTNGSVIEISYTGTSFIYRPGNIIGGR-VVHDCPTTKGIGYFLEPILILCLFAKTPTSLTLTGVTSSNEDIGVDVLRTSVLPSLQKRFQVGDELEL 151          
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RCL1_DROME (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Drosophila melanogaster GN=Rtc1 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 4.645e-30
Identity = 69/144 (47.92%), Postives = 96/144 (66.67%), Query Frame = 1
Query:   40 KGSYSLRQRLVLSTLASTPVLIDDIRADD-TMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGVPSERLEL 468
            +GS  L+QRL+L+ L+  PV I  IR++D T PGLR +EISL+RLL++I +   +E+N  GT + + PG++ GG+ L HDC V R IGY+L+ LI +G F K P+  TL G+TN    PSVD  +   L LL+RF +  E LEL
Sbjct:   14 RGSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGTSVMFSPGLLHGGQ-LNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALSLLKRFLLVDEGLEL 156          
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RCL1_YEAST (RNA 3'-terminal phosphate cyclase-like protein OS=Saccharomyces cerevisiae GN=RCL1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.385e-26
Identity = 56/140 (40.00%), Postives = 91/140 (65.00%), Query Frame = 1
Query:   28 YKRLKGSYSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGV 447
            Y   +GS + R R+VL+TL+  P+ I+ IR+ D  PGL+ +E+S LRL+E + +  V+EI+ TGT + Y+PGI++GG +  H C  S+ +GYF+EP++ +  F+KK  SI   GIT    D  ++  +   +P++ +FGV
Sbjct:    8 YTTFQGSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGTTVIYRPGIIVGGAS-THICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEAIKWGLMPVMEKFGV 146          
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RCL1_CAEEL (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Caenorhabditis elegans GN=ZK1127.5 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.499e-23
Identity = 59/143 (41.26%), Postives = 89/143 (62.24%), Query Frame = 1
Query:   43 GSYSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGR-NLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGVPSERLEL 468
            G    R RL  S L+  P+ I +IR +D  PG+R  E  L+ LLE++ +   VEI+ TGT++ ++PG++ GG  NL  DCG  R I YFLEPL+L+  F K P+ I L G+TN P + SVD  +++ L +  +F +  E+L++
Sbjct:   10 GCNFFRIRLAYSILSGRPIRIINIRKNDDRPGIRDFESKLIGLLEKVTNGTKVEISRTGTQVIFRPGMITGGVVNL--DCGTERCISYFLEPLLLLSPFCKVPMVIKLKGVTNAPGEISVDGMKASWLKVYNKFVLNDEKLDI 150          
BLAST of DY304651 vs. ExPASy Swiss-Prot
Match: RTCA_PYRFU (Probable RNA 3'-terminal phosphate cyclase OS=Pyrococcus furiosus GN=rtcA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 44/138 (31.88%), Postives = 69/138 (50.00%), Query Frame = 1
Query:   43 GSYSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISITLTGITNDPKDPSVDTFRSTTLPLLRRFGVPSE 456
            G   LR  + LS +   PV I +IRA+   PGLRP  ++ +  L+++ +  V        E+ + PG + GG   V D G + SI   L+ L+   +FAK  +   +TG T+    P VD   + T+  LR+ G+  E
Sbjct:   12 GGQILRTSIALSAITGEPVKIINIRANRPNPGLRPQHLNAILALKKLANAKVEGAEVGSREVTFIPGELKGGEIRV-DIGTAGSITLVLQALLPAMVFAKDTVEFKITGGTDVSWSPPVDYLINVTMFALRKIGIEGE 148          
The following BLAST results are available for this feature:
BLAST of DY304651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RCL1_ARATH1.532e-5770.47Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RCL1_DICDI1.648e-3549.28Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RCL1_HUMAN2.380e-3452.82RNA 3'-terminal phosphate cyclase-like protein OS=... [more]
RCL1_MOUSE3.108e-3452.82RNA 3'-terminal phosphate cyclase-like protein OS=... [more]
RCL1_BOVIN3.108e-3452.11RNA 3'-terminal phosphate cyclase-like protein OS=... [more]
RCL1_SCHPO6.481e-3245.89Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RCL1_DROME4.645e-3047.92Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RCL1_YEAST2.385e-2640.00RNA 3'-terminal phosphate cyclase-like protein OS=... [more]
RCL1_CAEEL5.499e-2341.26Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RTCA_PYRFU8.236e-1131.88Probable RNA 3'-terminal phosphate cyclase OS=Pyro... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YE20RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304651 ID=DY304651; Name=DY304651; organism=Citrus clementina; type=EST; length=961bp
CAAACCTTTATGGGGAAGAAGACATCGTACAAGAGACTGAAGGGAAGCTA
TAGCCTGAGGCAGAGACTGGTATTGTCTACGCTCGCCTCCACTCCTGTTC
TCATAGACGACATCCGCGCCGACGACACGATGCCCGGTCTCCGTCCCCAC
GAGATTTCCCTTCTTCGCCTCCTCGAAAGAATCTGCGATGACTGCGTCGT
CGAAATTAACGAAACTGGCACGGAATTGGAGTACAAGCCGGGAATAGTGA
TGGGAGGAAGGAACTTAGTGCATGACTGCGGCGTTAGCCGGTCTATTGGG
TATTTCTTGGAGCCGCTGATTCTTGTTGGATTGTTTGCTAAGAAACCCAT
TAGCATAACGCTAACAGGAATTACAAATGATCCTAAGGATCCAAGTGTGG
ATACTTTCCGTTCTACTACCTTACCCTTGTTAAGGAGGTTTGGGGTTCCT
TCTGAGAGATTGGAATTGGGCAGTGAAATTCCTGGTATCCCTATTGATGG
ACTAGGTGATATAATTTCGAGAGACATGCCTGTGGCCAAGTTATCCCCAT
CGTCCTCTCACGATTTTATGGGCTTGTGGATATGGTAACAATGTGTTGCA
TCGACAGCAAGAGTGTTTAATGGATCACGTAAAATCACAAGAAAGGATTT
GGTTTTGGCCAAACCAGTCACGCTTTCATTGCGTCCTAGCTTCCTGCACG
TGGTGCTTCCCAATTTGCCCCACCTATATAAACGCAACCCGAGAAGGCGA
GCTAGATTTACTTACGGAGATGGGATTTCGATGAAAAATTTCTTCGCCGG
CAGGAACGGACCTGGGCGACGCCCGACTTTGACCCTTGAGGGAACATTTT
GCAATACAAATTTACCCCCGCTTTTTTTCCCTCCATCGCAGATTCCTTCC
CGTTTTCGTGCCTATTGCGGTTTTAGACTATAGGGATGTGCCAAAAATTG
ACCTAAAACTT
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