DY304658

Overview
NameDY304658
Unique NameDY304658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304658 vs. ExPASy Swiss-Prot
Match: ARP8_ARATH (Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.739e-71
Identity = 132/219 (60.27%), Postives = 167/219 (76.26%), Query Frame = 2
Query:   68 MLLRRVWETMSSRTCSTGDS-------SARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSRSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLVTG---LSFMHIYGQRAQVPGSVIIDGGSGYC*FGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYIRMQVTPSPQPIVVSMPICHYDHTEIALASRRQLQ 694
            M+L++VW ++ +R+ S  D           P   + SSSLGAFDQ+P D+L+QI+ ++ PK+A KL +  ++W+ + S NRLWIF+LQ  QEPWDSIFF ET+L SGYP + + +    LSFMHIY QRAQVPGS+IIDGGSGYC FGWSKY  PSGR+ATFLEFGNIESP+Y+RL+ FFATI+ RMQV PS QPIVVS+P+CH+D TE A ASRRQL+
Sbjct:    1 MILKKVWGSVWNRSNSGKDLVNHQRAIDVPPLLLSSSSSLGAFDQLPMDILVQILMMMEPKDAVKLGLTCKAWKCVASGNRLWIFYLQCSQEPWDSIFFAETSLRSGYPLRMISSQSGELSFMHIYSQRAQVPGSIIIDGGSGYCKFGWSKYASPSGRSATFLEFGNIESPIYARLQQFFATIFTRMQVKPSMQPIVVSLPLCHFDDTESAKASRRQLK 219          
BLAST of DY304658 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSJ (Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.197e-63
Identity = 126/258 (48.84%), Postives = 161/258 (62.40%), Query Frame = 2
Query:   62 MAMLLRRVWETMSSRTCS---------TGDSSARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSRSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSG---YP--YQTLVTGLSFMHIYGQRAQVPGSVIIDGGSGYC*FGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYIRMQVTPSPQPIVVSMPICHYDHTEIALASRRQLQDCFHXXXXXXXXXXXXCQDSGFFGFHASNVNTG 793
            MA+LLR+VW ++ +R  +            S  RP    E  SLGA D +P DVL QI++L+GP +AA+   V R+WR L SDN LW FFL+   +PW+ + F ET LG+G   +P  Y      LSF H+Y +RA VPGS+I+DGGSGYC +GWSKY  PSGR ATFLEFGNIESPMY+RLRHF +TIY RMQV PS QPI+V +P+CH D TE A ASR+Q +D  +              D      +A+   +G
Sbjct:    1 MAVLLRKVWGSVLARAAAGAAPPEAFAAAASPRRPQAAGEYGSLGALDVLPIDVLAQILRLLGPADAARSTAVCRAWRLLASDNGLWAFFLRLGPDPWELVVFAETHLGAGPALHPGLYYDSSPQLSFKHVYTRRAVVPGSIIVDGGSGYCKYGWSKYAAPSGRCATFLEFGNIESPMYARLRHFLSTIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFDMNVPAVCSVDQAVLALYAAKRTSG 258          
BLAST of DY304658 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSI (Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.197e-63
Identity = 126/258 (48.84%), Postives = 161/258 (62.40%), Query Frame = 2
Query:   62 MAMLLRRVWETMSSRTCS---------TGDSSARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSRSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSG---YP--YQTLVTGLSFMHIYGQRAQVPGSVIIDGGSGYC*FGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYIRMQVTPSPQPIVVSMPICHYDHTEIALASRRQLQDCFHXXXXXXXXXXXXCQDSGFFGFHASNVNTG 793
            MA+LLR+VW ++ +R  +            S  RP    E  SLGA D +P DVL QI++L+GP +AA+   V R+WR L SDN LW FFL+   +PW+ + F ET LG+G   +P  Y      LSF H+Y +RA VPGS+I+DGGSGYC +GWSKY  PSGR ATFLEFGNIESPMY+RLRHF +TIY RMQV PS QPI+V +P+CH D TE A ASR+Q +D  +              D      +A+   +G
Sbjct:    1 MAVLLRKVWGSVLARAAAGAAPPEAFAAAASPRRPQAAGEYGSLGALDVLPIDVLAQILRLLGPADAARSTAVCRAWRLLASDNGLWAFFLRLGPDPWELVVFAETHLGAGPALHPGLYYDSSPQLSFKHVYTRRAVVPGSIIVDGGSGYCKYGWSKYAAPSGRCATFLEFGNIESPMYARLRHFLSTIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFDMNVPAVCSVDQAVLALYAAKRTSG 258          
The following BLAST results are available for this feature:
BLAST of DY304658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARP8_ARATH3.739e-7160.27Actin-related protein 8 OS=Arabidopsis thaliana GN... [more]
ARP8_ORYSJ2.197e-6348.84Actin-related protein 8 OS=Oryza sativa subsp. jap... [more]
ARP8_ORYSI2.197e-6348.84Actin-related protein 8 OS=Oryza sativa subsp. ind... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YF04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304658 ID=DY304658; Name=DY304658; organism=Citrus clementina; type=EST; length=897bp
CAGACAGAATTCAGAACACATTATCCTGGAAAATTCAAAACCGATGAGCT
GATTGTGAAAGATGGCGATGTTGTTGAGAAGAGTATGGGAAACGATGTCG
TCTCGGACTTGTTCGACTGGCGACTCGTCGGCTCGGCCTAGTTGTACGAC
TGAGTCGTCATCTTTAGGTGCATTTGATCAGATACCGTGGGATGTACTTA
TTCAAATTGTGAAATTGATTGGTCCAAAGGAGGCGGCGAAGCTCTGTGTG
GTCAGCAGGTCGTGGCGCGCGCTTGTATCTGATAATCGTCTGTGGATTTT
CTTTCTACAGCATCAGCAAGAGCCGTGGGACTCCATTTTCTTTGGTGAAA
CAACTCTCGGATCGGGATATCCTTACCAAACTTTGGTGACTGGCTTATCA
TTCATGCATATTTATGGCCAACGGGCCCAAGTTCCTGGTTCTGTTATCAT
TGATGGTGGTTCAGGTTATTGCTAGTTTGGTTGGAGCAAGTATGATTGTC
CTTCTGGGCGAACAGCCACCTTTTTGGAATTTGGCAATATTGAGTCTCCG
ATGTACTCAAGACTTCGACATTTTTTTGCTACTATATACATCAGGATGCA
GGTGACACCATCCCCGCAGCCAATTGTGGTGTCCATGCCCATCTGCCATT
ATGACCATACTGAGATTGCCTTAGCATCGCGACGGCAGCTTCAGGATTGC
TTCCATCCACCCCCGTTTGACCCAAATGTTCCTGCTGTTCCGTGCCAAGA
TTCAGGATTCTTCGGCTTCCATGCCTCAAATGTAAATACCGGCACTTGTT
GTTGTGAATGCTTCTCCGGGCATTTCGGAAATTTCATTTTAAATGGCAAA
ATTAAGAGCCAGGCGAGTTGGCGCTCCGCGTATCAGGAGCTTTAATT
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