DY304662

Overview
NameDY304662
Unique NameDY304662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length939
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304662 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.962e-22
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 3
Query:  132 EAATCSPTELSPCAPAITSSAPPSGACCNKMRQHRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 341
            EA TC+PTELS C PAIT  + PS  CC+K++   PCLC ++++P+LKQYVNSP AK+V++ CG+ YP C
Sbjct:   30 EAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of DY304662 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.454e-20
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 3
Query:  141 TCSPTELSPCAPAITSSAPPSGACCNKMRQHRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 341
            TCSP +LSPC   I S AP    CC K+R+ RPCLCG+L++P+L+QYVNSPNA+++ + CG+P P+C
Sbjct:    2 TCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of DY304662 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.854e-14
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 3
Query:  138 ATCSPTELSPCAPAITSSAPPSGACCNKMRQHRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 341
            A C P +L+ CA AI     PSG CC  +R  + CLC +++DPN   YV+SP+A+  +  CGIP P C
Sbjct:   35 AACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of DY304662 vs. ExPASy Swiss-Prot
Match: NLTP2_MAIZE (Probable non-specific lipid-transfer protein 2 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.703e-13
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  135 AATCSPTELSPCA-PAITSSAPPSGACCNKMRQHRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 341
            A  C+P +L+PCA PA+   A P  ACC ++R  + CLCG+ R PN   Y+ SPNA R+ A C +P PRC
Sbjct:    1 ANPCNPAQLTPCAGPALFGGAVPP-ACCAQLRAQQGCLCGYARSPNYGSYIRSPNAARLFAICNLPMPRC 69          
BLAST of DY304662 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.225e-13
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  138 ATCSPTELSPCAPAITSSAPPSGACCNKMRQHRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 341
            A+C+  +L+ CA AI   A P+ ACC+ +R  + C C F +DP   +YVNSPNA++ +++CGI  P C
Sbjct:   28 ASCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of DY304662 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 3
Query:  144 CSPTELSPCAPAITSSAPPSGACCNKMRQHRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 341
            C  ++L+ CA AI S A PSG CC  +R  +PC C + +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
BLAST of DY304662 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.442e-12
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 3
Query:  138 ATCSPTELSPCAPAITSSAPPSGACCNKMRQHRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 341
            A C+  +L+ C  AI   A P+ ACC+ +R  + C C F +DP   +YVNSPNA++ +++CGI  P C
Sbjct:   28 AGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of DY304662 vs. ExPASy Swiss-Prot
Match: NLT2G_WHEAT (Non-specific lipid-transfer protein 2G OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  144 CSPTELSPCAPAITSSAPPSGACCNKMRQHRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 341
            C  ++L+ CA AI S A PSG CC  +R  + C C + +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of DY304662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NLTP_VIGUN9.962e-2257.14Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_PRUAR2.454e-2056.72Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP2_HORVU5.854e-1445.59Probable non-specific lipid-transfer protein OS=Ho... [more]
NLTP2_MAIZE1.703e-1348.57Probable non-specific lipid-transfer protein 2 OS=... [more]
NLTPX_ORYSI2.225e-1344.12Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2P_WHEAT8.453e-1342.42Non-specific lipid-transfer protein 2P OS=Triticum... [more]
NLTPX_ORYSJ1.442e-1242.65Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2G_WHEAT7.156e-1240.91Non-specific lipid-transfer protein 2G OS=Triticum... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ9YF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304662 ID=DY304662; Name=DY304662; organism=Citrus clementina; type=EST; length=939bp
AGATATTCTAGTATATTTTTGTTTTGTGACAATTAGTTTTGATAATGAAT
AAGGCTCCTTCTGTTGCGGCTGTGGGCTTTGTGGTGGCGCTGCTGGTGGC
TGTGGCGGCACTAAGCCAAGTTAATGTGGCAGAGGCAGCGACATGCAGCC
CTACGGAGCTGAGCCCATGTGCGCCAGCAATCACATCGTCGGCACCGCCG
TCGGGAGCATGCTGCAACAAGATGAGGCAGCATAGGCCATGCCTTTGTGG
ATTCCTGAGGGACCCTAACCTGAAACAATATGTTAACTCTCCCAATGCTA
AAAGGGTTATTGCTACCTGCGGAATTCCCTATCCTCGGTGTTAGGGTTAA
TAATACGCCTTGTTAAAATACTGCACAAAATGAGGGCGTAACTAAAAAAC
ATCATAATAAGAGCATGGATTTGTACGCAATAATTTCTGAATTGAATCCA
TAAAGAAATTTAACAATAGAAATGGCTCTCCATAGAAGGTTAAATGTAAT
CTTGAACCCGTAGTCTCTGATTCTAATCATTCTACAAACATGATCATAAG
CACTAAATCACCCCAACTACATTTTACTGAATGCTATACATAAAATCATA
ACCTATTTCTTAAGAATACTGTATAACAAAAAAGACGCTTTAAGAAGCAC
AAACAAATAACCCCTCATGTACAACAAACCTAACCCTAACATTCAATCCG
AGCACCTAGAGCCCCCAATAAGTGATCCAAAAAAAAACCCACAGACTCAC
ACTACCTTTCAAAAGTCCCAAAAACCGTGAAAACTTTTCTCGCCGCAAAC
AAATGACCGTCAAAAAATAATTACGACTAAGAATACAACACCGAACAAAA
TAAACAACAAAAGTCTCTTTTCTTCCTTACACAAAAAATAAAAATATACA
AACAGCCCCTAAAAACACAAGTCCCATATCCTCGGTTTT
back to top